Rw7G034300
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000240
Physical Location & Seq
Reverse (-)
50835811 .. 50836338
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034300.1

Sequence Viewer

Length: 528 bp
ATGATGTTCCAACAAGTTACTGCAAGTGGTGTTCATGCTTGGGCACCATCTTCTGGTGTACTTCCACCTGATGATATAGAAGTTAACAATGTTGCAGTTCCATTAGATAGCGATGATGATTTGGCATGTCCCATTGAAGTCATTGCCAGTTCTTTAGGTAAGAGGAAAAGGACACCAACAAAACAAGTTAATGCAGGTACTGAGAAAAATAATAAAGCCAAAGGTATAGGATCAAGAAAGATTGGAGGTGCAGCTAAGTTAGCAATACAAATTGATCGGATGGTGGAATCAATTCAAACTAGGAGCGCCGTGACTTCAGTAATGAATAAATGTGTGTTGGGGACTTCTATTGCTGAAGTGATGAAATCAGTTTCATCTTTACCCAGGGCAGAGCCAGGTAGTCCTTTGTGGTTTTTTGCAACTCAGTTATTTCTCAATCAAGAAAAGAGAGAGATGTTTGTCACCATAGAAGATGCAGATATCAAGATTCAGTGGCTTTATTATGAAATGGGAACTAGTGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

175

Amino Acids

19.0

Weight (kDa)

7.73

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 53
AclWI GGATC 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 300, 375
AfaI GTAC 2 cut(s) 60, 199
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 137, 296
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 2 cut(s) 383, 394
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 55, 274
BceAI ACGGC 1 cut(s) 293
BciT130I CCWGG 2 cut(s) 385, 396
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 2 cut(s) 300, 516
BfoI RGCGCY 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 385, 396
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 2 cut(s) 385, 396
BmsI GCATC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 383, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 385, 396
BseDI CCNNGG 2 cut(s) 383, 384
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 192, 437
BseNI ACTGG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 43
BslFI GGGAC 2 cut(s) 114, 355
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 114, 355
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 230, 274
BspCNI CTCAG 2 cut(s) 193, 436
BspLI GGNNCC 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 383, 384
BssMI GATC 2 cut(s) 230, 274
Bst2UI CCWGG 2 cut(s) 385, 396
BstDEI CTNAG 3 cut(s) 201, 255, 423
BstF5I GGATG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 2 cut(s) 233, 277
BstMBI GATC 2 cut(s) 230, 274
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 385, 396
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 383, 394
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 497
BveI ACCTGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 59, 198
CviAII CATG 2 cut(s) 35, 126
CviJI RGCY 4 cut(s) 218, 254, 394, 496
CviKI_1 RGCY 4 cut(s) 218, 254, 394, 496
CviQI GTAC 2 cut(s) 59, 198
DdeI CTNAG 3 cut(s) 201, 255, 423
DpnI GATC 2 cut(s) 232, 276
DpnII GATC 2 cut(s) 230, 274
Eco32I GATATC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 300, 375
EcoRII CCWGG 2 cut(s) 383, 394
EcoRV GATATC 1 cut(s) 481
FaeI CATG 2 cut(s) 38, 129
FaiI YATR 6 cut(s) 36, 77, 127, 227, 467, 504
FaqI GGGAC 2 cut(s) 114, 355
FatI CATG 2 cut(s) 34, 125
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 300, 516
GlaI GCGC 1 cut(s) 307
GluI GCNGC 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 309
HhaI GCGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 38, 129
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 2 cut(s) 287, 487
HpaI GTTAAC 1 cut(s) 85
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 59, 85
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 3 cut(s) 234, 440, 484
Hpy8I GTNNAC 2 cut(s) 59, 85
HpyCH4V TGCA 6 cut(s) 23, 95, 194, 251, 419, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 201, 255, 423
Hsp92II CATG 2 cut(s) 38, 129
HspAI GCGC 1 cut(s) 306
KspAI GTTAAC 1 cut(s) 85
Kzo9I GATC 2 cut(s) 230, 274
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 8 cut(s) 39, 81, 160, 180, 370, 381, 397, 408
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 1 cut(s) 463
MaeI CTAG 2 cut(s) 300, 516
MaeIII GTNAC 3 cut(s) 16, 310, 460
MalI GATC 2 cut(s) 232, 276
MboI GATC 2 cut(s) 230, 274
MboII GAAGA 2 cut(s) 42, 482
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 2 cut(s) 270, 291
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 2 cut(s) 156, 239
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 84, 189
MspR9I CCNGG 2 cut(s) 385, 396
MvaI CCWGG 2 cut(s) 385, 396
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 2 cut(s) 230, 274
NlaIII CATG 2 cut(s) 38, 129
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 310, 460
NspI RCATGY 1 cut(s) 129
PasI CCCWGGG 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 287, 487
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 383, 394
PspGI CCWGG 2 cut(s) 383, 394
PspN4I GGNNCC 1 cut(s) 45
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 60, 199
RsaNI GTAC 2 cut(s) 59, 198
SaqAI TTAA 2 cut(s) 84, 189
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 230, 274
ScrFI CCNGG 2 cut(s) 385, 396
SduI GDGCHC 1 cut(s) 46
SetI ASST 7 cut(s) 70, 160, 199, 226, 250, 256, 400
SfaNI GCATC 1 cut(s) 463
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 2 cut(s) 270, 291
SspMI CTAG 2 cut(s) 300, 516
StyD4I CCNGG 2 cut(s) 383, 394
TasI AATT 2 cut(s) 270, 291
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 2 cut(s) 287, 487
Tru1I TTAA 2 cut(s) 84, 189
Tru9I TTAA 2 cut(s) 84, 189
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 2 cut(s) 310, 460
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 2 cut(s) 310, 460
TspDTI ATGAA 5 cut(s) 23, 338, 363, 377, 519
TspRI CASTG 1 cut(s) 497
Van91I CCANNNNNTGG 1 cut(s) 53
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 300, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.