Rroxscaffold_6G00423350

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000240
Physical Location & Seq
Reverse (-)
44470976 .. 44475281
4306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423350.1

Sequence Viewer

Length: 291 bp
ATGTTGAATTCGACAAGGGGAATTTCGTTGTTATTTGCGCGGTCGTGTCCCGATGGGATTGTGATTCGTACTTCATCTACAAGCCTTCAACTTGGATTATTCAAATCAATCCGGAGTATCGCAAGTTTCGGGATGTGGGGAATTAGTCCCGAAATGATGGCTGTTTATGACAACATGTTCAGGGGTAGCACAACCCTAGGTCACTTTGTCATGATTCCCTCGGCTACTATAGATATTGAAGAGTTTACCAAACACCTCACTGCTTCCTCTCACGGCGGGTTCGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

96

Amino Acids

10.42

Weight (kDa)

9.1

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 40
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 2 cut(s) 40, 276
AcsI RAATTY 2 cut(s) 7, 21
AfaI GTAC 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 7, 89, 103, 239
Aor13HI TCCGGA 1 cut(s) 111
ApoI RAATTY 2 cut(s) 7, 21
AspA2I CCTAGG 1 cut(s) 196
AspLEI GCGC 1 cut(s) 40
AvrII CCTAGG 1 cut(s) 196
BccI CCATC 2 cut(s) 47, 151
BceAI ACGGC 1 cut(s) 289
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 228
BlnI CCTAGG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 196, 219
BsaWI WCCGGW 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 196, 219
BseGI GGATG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 33, 132
BsmFI GGGAC 2 cut(s) 33, 132
Bsp13I TCCGGA 1 cut(s) 111
BspACI CCGC 2 cut(s) 40, 276
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 196, 219
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 234
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 138
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 175, 211
CviJI RGCY 3 cut(s) 84, 161, 224
CviKI_1 RGCY 3 cut(s) 84, 161, 224
CviQI GTAC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 178, 214
FaiI YATR 4 cut(s) 168, 176, 212, 230
FaqI GGGAC 2 cut(s) 33, 132
FatI CATG 2 cut(s) 174, 210
FauI CCCGC 1 cut(s) 269
FokI GGATG 1 cut(s) 145
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 39
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 40
Hin1II CATG 2 cut(s) 178, 214
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 64, 214
HpaII CCGG 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 246
Hpy188III TCNNGA 6 cut(s) 50, 112, 130, 149, 211, 283
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 178, 214
HspAI GCGC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 111
LpnPI CCDG 2 cut(s) 125, 166
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 1 cut(s) 251
MluCI AATT 3 cut(s) 7, 21, 141
MnlI CCTC 3 cut(s) 229, 266, 277
MroI TCCGGA 1 cut(s) 111
MspI CCGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 40
NlaIII CATG 2 cut(s) 178, 214
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 178
PagI TCATGA 1 cut(s) 210
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 2 cut(s) 64, 214
PscI ACATGT 1 cut(s) 174
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SetI ASST 2 cut(s) 202, 258
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 7, 21, 141
SsiI CCGC 2 cut(s) 40, 276
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 11
TasI AATT 3 cut(s) 7, 21, 141
TfiI GAWTC 2 cut(s) 64, 214
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 265
XapI RAATTY 2 cut(s) 7, 21
XceI RCATGY 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 196
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.