Rroxscaffold_7G00184840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000240
Physical Location & Seq
Forward (+)
24130341 .. 24151101
20761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184840.1

Sequence Viewer

Length: 714 bp
ATGAAGGAAGGAGATGACATCACCATTACGATTCGTAGGTTCTTATGTGAAAAGCTTGTTTCAATGTATGCTTGTTTGATATCTGTTGGTTCATTATATGCTTACAGGCATCTTGAAAAGCTCCTGCTGCCACCTGTTAAGGCCCAGTTTGAGATTGATTTTGGAGCTGCTTCTGCCTTTGGGCTTACGGTATGGTGTTTGGTAAATTCTCTAGAAGTTGCTTTTGGTCCAAATAGCTTCTCTCGAAAGCCGAAAGTGAGAAGCAACCAAGTGCGGCTTTTGAAGTCGTCGTGGAAAACACGGAGTGAACACATCCCTTGCTTCGGTGGGTGGGAGCAAAGCCTTCGTGTTAGAGGTCGGGAGCTCCCATCTTGCTATAGTTTGTCTGCATTGGCTCTAAAGAAACGTATGGAGCTGCATATCAATCCAGAGTATCGCAAATTTCCTGACATGGGAATTAGTCCTGGAATAATGGCTGTTTATGATAACATGTTAAGGGGTAGCACAGCCCTAGGTCACTTTGTCATGATTCCCTCAGCTAGTATAGATATTGAAGAGTTTATGGAGGATTTTGAGCATAATGTAATTTTTGGAGATGATGAGGAGATAGACCAGCAAGAAAACATTGACTTCTCTCTCCCAAGAAGCTCTCAAATGAGAGGAAGAAATAAGAAGTCTCTTGGGCATAAAAACCTTGAGACTATTGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.98

Weight (kDa)

7.01

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 205, 440
AdeI CACNNNGTG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 323, 452
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 4 cut(s) 63, 116, 283, 554
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 8 cut(s) 55, 121, 167, 237, 364, 415, 539, 648
AluI AGCT 8 cut(s) 55, 121, 167, 237, 364, 415, 539, 648
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 681, 692
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 127, 167, 415
ApoI RAATTY 2 cut(s) 205, 440
AspA2I CCTAGG 1 cut(s) 511
AspS9I GGNCC 2 cut(s) 142, 227
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 227
AvrII CCTAGG 1 cut(s) 511
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 535
BbvI GCAGC 3 cut(s) 114, 154, 402
BccI CCATC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 681, 692
BfaI CTAG 3 cut(s) 212, 512, 540
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 4 cut(s) 128, 168, 275, 416
BlnI CCTAGG 1 cut(s) 511
BlsI GCNGC 4 cut(s) 129, 169, 276, 417
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 142, 227
BmrFI CCNGG 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 2 cut(s) 323, 452
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 323, 452
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 3 cut(s) 114, 154, 402
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 323, 452
BsmAI GTCTC 2 cut(s) 681, 692
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 366
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 548
BspHI TCATGA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 511
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 549
BstDEI CTNAG 1 cut(s) 535
BstF5I GGATG 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 681, 692
BstMWI GCNNNNNNNGC 2 cut(s) 127, 173
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 114, 154, 402
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 312
CciI TCATGA 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 142, 227
CviAII CATG 3 cut(s) 451, 490, 526
DdeI CTNAG 1 cut(s) 535
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 511
FaeI CATG 3 cut(s) 454, 493, 529
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 3 cut(s) 450, 489, 525
Fnu4HI GCNGC 4 cut(s) 128, 168, 275, 416
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 4 cut(s) 128, 168, 275, 416
FspBI CTAG 3 cut(s) 212, 512, 540
GluI GCNGC 4 cut(s) 128, 168, 275, 416
HaeIII GGCC 1 cut(s) 143
Hin1II CATG 3 cut(s) 454, 493, 529
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 31, 529
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 308
Hpy188III TCNNGA 7 cut(s) 113, 212, 243, 359, 428, 446, 526
Hpy8I GTNNAC 1 cut(s) 308
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 389, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 173
HpyF3I CTNAG 1 cut(s) 535
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 3 cut(s) 454, 493, 529
LmnI GCTCC 6 cut(s) 126, 164, 334, 361, 369, 412
LpnPI CCDG 9 cut(s) 91, 137, 147, 158, 441, 450, 459, 477, 626
Lsp1109I GCAGC 3 cut(s) 114, 154, 402
LweI GCATC 1 cut(s) 118
MaeI CTAG 3 cut(s) 212, 512, 540
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 515
MboII GAAGA 2 cut(s) 566, 675
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 205, 440, 456, 585
MnlI CCTC 5 cut(s) 347, 544, 559, 595, 653
MseI TTAA 2 cut(s) 138, 494
MspR9I CCNGG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 127, 173
NlaIII CATG 3 cut(s) 454, 493, 529
NmuCI GTSAC 1 cut(s) 515
NspI RCATGY 1 cut(s) 493
PagI TCATGA 1 cut(s) 525
PciI ACATGT 1 cut(s) 489
PfeI GAWTC 2 cut(s) 31, 529
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 4 cut(s) 129, 169, 276, 417
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 2 cut(s) 142, 227
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 2 cut(s) 138, 494
SatI GCNGC 4 cut(s) 128, 168, 275, 416
Sau96I GGNCC 2 cut(s) 142, 227
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 4 cut(s) 205, 440, 456, 585
SsiI CCGC 1 cut(s) 274
SspMI CTAG 3 cut(s) 212, 512, 540
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 409
TaqI TCGA 1 cut(s) 244
TasI AATT 4 cut(s) 205, 440, 456, 585
TauI GCSGC 1 cut(s) 277
TfiI GAWTC 2 cut(s) 31, 529
Tru1I TTAA 2 cut(s) 138, 494
Tru9I TTAA 2 cut(s) 138, 494
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 3 cut(s) 127, 167, 415
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 17, 81
TspGWI ACGGA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 2 cut(s) 205, 440
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 1 cut(s) 493
XmaJI CCTAGG 1 cut(s) 511
XspI CTAG 3 cut(s) 212, 512, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.