Rmu_sc0003257.1_g000014
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003257.1
OG0000240
Physical Location & Seq
Forward (+)
71082 .. 73077
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003257.1_g000014.1.cds

Sequence Viewer

Length: 687 bp
atgctctgggcacccgggaaggttttgacagccaacccaccggtgatcatcaccgccatctcggtgactcatctcccggcagcgactctatatctcggggacttctcctataatgtcatattctcccagcaacatctcctctcgatgactctaatcatggactcacgatggcgagttgcttttaatgtaggacctgaaacacgcctcctctgccgtcaaaactcaaaacacctcagctcatcgatcgatctcttatgtgtcttcaaaacccgatttcgtcgctcctccgccacaggccccaaacccaaagcattcccggaccccagcttctacaacctccttttgtacttgatgggaaagaagaaatccaccggtactgaaaatgtgggatttggaaaacaaaaagccacgtggccgaatgaggtagcagctatattttgtgatatagctgctaaggaagtggccaagggaaacatacctagtacacattttgagacaaagggatggtcaaatgttatcatggcctttaaggagttaaccggaagggattacgataaaagccaactgaaaaataagtgggattcacttaaaaatgattggaaattgtggagttcacttttgcataaggaaactagtattggatgggatccggctaggaaaactgtcgacgcacctgctgaatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

228

Amino Acids

25.69

Weight (kDa)

9.61

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 666
AciI CCGC 2 cut(s) 54, 288
AclWI GGATC 2 cut(s) 641, 654
AcoI YGGCCR 2 cut(s) 413, 462
AcvI CACGTG 1 cut(s) 411
AfaI GTAC 3 cut(s) 347, 376, 484
AgeI ACCGGT 2 cut(s) 40, 371
AgsI TTSAA 1 cut(s) 265
AhlI ACTAGT 1 cut(s) 632
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AluBI AGCT 4 cut(s) 237, 327, 431, 449
AluI AGCT 4 cut(s) 237, 327, 431, 449
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 641, 654
Ama87I CYCGRG 2 cut(s) 14, 95
AoxI GGCC 4 cut(s) 295, 413, 462, 522
ApeKI GCWGC 3 cut(s) 80, 428, 449
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsiGI ACCGGT 2 cut(s) 40, 371
AspS9I GGNCC 3 cut(s) 191, 296, 319
AsuC2I CCSGG 4 cut(s) 15, 16, 77, 317
AsuHPI GGTGA 3 cut(s) 43, 55, 76
AvaI CYCGRG 2 cut(s) 14, 95
AvaII GGWCC 2 cut(s) 191, 319
BaeGI GKGCMC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 10
BbrPI CACGTG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 92, 436, 440
BccI CCATC 5 cut(s) 65, 162, 346, 498, 636
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 1 cut(s) 656
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 4 cut(s) 15, 16, 77, 317
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 3 cut(s) 480, 633, 654
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 3 cut(s) 81, 429, 450
BlsI GCNGC 3 cut(s) 82, 430, 451
Bme1390I CCNGG 4 cut(s) 15, 16, 77, 317
Bme18I GGWCC 2 cut(s) 191, 319
BmeT110I CYCGRG 2 cut(s) 14, 95
BmgT120I GGNCC 3 cut(s) 191, 296, 319
BmiI GGNNCC 4 cut(s) 12, 298, 321, 648
BmrFI CCNGG 4 cut(s) 15, 16, 77, 317
BpiI GAAGAC 1 cut(s) 253
Bpu10I CCTNAGC 2 cut(s) 233, 453
BpuMI CCSGG 4 cut(s) 15, 16, 77, 317
Bsa29I ATCGAT 2 cut(s) 242, 246
BsaAI YACGTR 1 cut(s) 411
BsaJI CCNNGG 2 cut(s) 14, 465
BsaWI WCCGGW 3 cut(s) 40, 371, 539
Bse118I RCCGGY 2 cut(s) 40, 371
BseCI ATCGAT 2 cut(s) 242, 246
BseDI CCNNGG 2 cut(s) 14, 465
BseGI GGATG 2 cut(s) 509, 647
BseMII CTCAG 1 cut(s) 247
BseRI GAGGAG 3 cut(s) 128, 197, 274
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 3 cut(s) 92, 436, 440
BseYI CCCAGC 2 cut(s) 126, 323
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 297, 415, 464, 524
BshNI GGYRCC 1 cut(s) 10
BshTI ACCGGT 2 cut(s) 40, 371
BshVI ATCGAT 2 cut(s) 242, 246
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 14, 95
BsiSI CCGG 7 cut(s) 15, 41, 77, 317, 372, 540, 650
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 4 cut(s) 297, 415, 464, 524
BsoBI CYCGRG 2 cut(s) 14, 95
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 45, 243, 247, 646
BspACI CCGC 2 cut(s) 54, 288
BspANI GGCC 4 cut(s) 297, 415, 464, 524
BspCNI CTCAG 1 cut(s) 246
BspDI ATCGAT 2 cut(s) 242, 246
BspLI GGNNCC 4 cut(s) 12, 298, 321, 648
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 2 cut(s) 641, 654
BspT107I GGYRCC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 40, 371
BssAI RCCGGY 2 cut(s) 40, 371
BssECI CCNNGG 2 cut(s) 14, 465
BssMI GATC 4 cut(s) 45, 243, 247, 646
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 411
BstDEI CTNAG 2 cut(s) 233, 453
BstF5I GGATG 2 cut(s) 509, 647
BstKTI GATC 4 cut(s) 48, 246, 250, 649
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 45, 243, 247, 646
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 4 cut(s) 13, 14, 75, 315
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 92, 436, 440
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
Bsu15I ATCGAT 2 cut(s) 242, 246
BsuRI GGCC 4 cut(s) 297, 415, 464, 524
BsuTUI ATCGAT 2 cut(s) 242, 246
BtsCI GGATG 2 cut(s) 509, 647
BveI ACCTGC 1 cut(s) 682
Cfr10I RCCGGY 2 cut(s) 40, 371
Cfr13I GGNCC 3 cut(s) 191, 296, 319
Cfr9I CCCGGG 1 cut(s) 14
ClaI ATCGAT 2 cut(s) 242, 246
CseI GACGC 1 cut(s) 677
Csp6I GTAC 3 cut(s) 346, 375, 483
CspAI ACCGGT 2 cut(s) 40, 371
CviAII CATG 2 cut(s) 157, 520
CviQI GTAC 3 cut(s) 346, 375, 483
DdeI CTNAG 2 cut(s) 233, 453
DpnI GATC 4 cut(s) 47, 245, 249, 648
DpnII GATC 4 cut(s) 45, 243, 247, 646
EaeI YGGCCR 2 cut(s) 413, 462
EciI GGCGGA 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 191, 319
Eco72I CACGTG 1 cut(s) 411
Eco88I CYCGRG 2 cut(s) 14, 95
EcoO109I RGGNCCY 2 cut(s) 191, 296
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 160, 523
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 156, 519
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 3 cut(s) 81, 429, 450
FokI GGATG 2 cut(s) 516, 654
Fsp4HI GCNGC 3 cut(s) 81, 429, 450
FspBI CTAG 3 cut(s) 480, 633, 654
GluI GCNGC 3 cut(s) 81, 429, 450
GsaI CCCAGC 2 cut(s) 130, 327
HaeIII GGCC 4 cut(s) 297, 415, 464, 524
HapII CCGG 7 cut(s) 15, 41, 77, 317, 372, 540, 650
HgaI GACGC 1 cut(s) 677
Hin1II CATG 2 cut(s) 160, 523
HincII GTYRAC 2 cut(s) 537, 667
HindII GTYRAC 2 cut(s) 537, 667
HinfI GANTC 5 cut(s) 67, 85, 148, 161, 581
HpaI GTTAAC 1 cut(s) 537
HpaII CCGG 7 cut(s) 15, 41, 77, 317, 372, 540, 650
HphI GGTGA 3 cut(s) 43, 55, 76
Hpy166II GTNNAC 4 cut(s) 485, 537, 614, 667
Hpy188III TCNNGA 2 cut(s) 142, 165
Hpy8I GTNNAC 4 cut(s) 485, 537, 614, 667
Hpy99I CGWCG 2 cut(s) 282, 671
HpyAV CCTTC 2 cut(s) 13, 537
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 1 cut(s) 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 233, 453
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 2 cut(s) 160, 523
Ksp22I TGATCA 1 cut(s) 45
KspAI GTTAAC 1 cut(s) 537
Kzo9I GATC 4 cut(s) 45, 243, 247, 646
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 3 cut(s) 92, 436, 440
MaeI CTAG 3 cut(s) 480, 633, 654
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 47, 245, 249, 648
MboI GATC 4 cut(s) 45, 243, 247, 646
MboII GAAGA 2 cut(s) 253, 373
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 1 cut(s) 602
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 61, 79, 142, 155
MnlI CCTC 7 cut(s) 149, 215, 218, 242, 295, 347, 415
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 4 cut(s) 183, 528, 536, 588
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 7 cut(s) 15, 41, 77, 317, 372, 540, 650
MspR9I CCNGG 4 cut(s) 15, 16, 77, 317
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 4 cut(s) 15, 16, 77, 317
NdeII GATC 4 cut(s) 45, 243, 247, 646
NlaIII CATG 2 cut(s) 160, 523
NlaIV GGNNCC 4 cut(s) 12, 298, 321, 648
NmuCI GTSAC 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 682
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 315
PinAI ACCGGT 2 cut(s) 40, 371
PkrI GCNGC 3 cut(s) 82, 430, 451
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 4 cut(s) 61, 79, 142, 155
PmaCI CACGTG 1 cut(s) 411
PmlI CACGTG 1 cut(s) 411
PpsI GAGTC 4 cut(s) 61, 79, 142, 155
Ppu21I YACGTR 1 cut(s) 411
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
PspCI CACGTG 1 cut(s) 411
PspFI CCCAGC 2 cut(s) 126, 323
PspN4I GGNNCC 4 cut(s) 12, 298, 321, 648
PspPI GGNCC 3 cut(s) 191, 296, 319
PspPPI RGGWCCY 1 cut(s) 191
PsuI RGATCY 1 cut(s) 646
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 3 cut(s) 347, 376, 484
RsaNI GTAC 3 cut(s) 346, 375, 483
RseI CAYNNNNRTG 1 cut(s) 62
SalI GTCGAC 1 cut(s) 665
SaqAI TTAA 4 cut(s) 183, 528, 536, 588
SatI GCNGC 3 cut(s) 81, 429, 450
Sau3AI GATC 4 cut(s) 45, 243, 247, 646
Sau96I GGNCC 3 cut(s) 191, 296, 319
SchI GAGTC 4 cut(s) 61, 79, 142, 155
ScrFI CCNGG 4 cut(s) 15, 16, 77, 317
SduI GDGCHC 1 cut(s) 13
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 2 cut(s) 191, 319
SmaI CCCGGG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 62
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 1 cut(s) 602
SsiI CCGC 2 cut(s) 54, 288
SspMI CTAG 3 cut(s) 480, 633, 654
StyD4I CCNGG 4 cut(s) 13, 14, 75, 315
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 1 cut(s) 413
TaqI TCGA 4 cut(s) 143, 242, 246, 666
TasI AATT 1 cut(s) 602
TatI WGTACW 2 cut(s) 345, 482
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 4 cut(s) 183, 528, 536, 588
Tru9I TTAA 4 cut(s) 183, 528, 536, 588
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 80, 428, 449
Tsp45I GTSAC 1 cut(s) 64
TspMI CCCGGG 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 191, 319
XmaI CCCGGG 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 666
XspI CTAG 3 cut(s) 480, 633, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.