Rroxscaffold_3G00230350
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000240
Physical Location & Seq
Forward (+)
15166291 .. 15169793
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230350.1

Sequence Viewer

Length: 666 bp
ATGGCTGTTTGGAATGATGGTTTAGTAGATGTTTTTTGTGACTTATGTATCAAGGAGGTGGATAACAATAATCGTCCACATACTCATTTTAATCCGGAGGGATGGGGAAAAGAGACCGGTCTTGGGTGGGATCACGGGCGTCAAACTATAGATGCATCCGATGAGTGGTGGCACCTCAAGATTGAGAAAAACAAGGAATATGGAAAGTTAAAGAAAAAGGGAATTGCACCCGATTTTGAAGACAAGTTGGATAAGATGTTCATGGGTATTTCAGCCACTGGTCAGCATGCATATTCACCATCTTCTACACTACCTATCCCTAGAAGTCCACAGCAAGGTAACAATGAGGTGAACCTTGAAGGTAGTGGTGACTCGAGGACAATGATGATTTGGCCCCCATTCCGCCTAAAAGAAAAAGAAATGAGAGAGTTGAGAAAGGCAATTGAGAGTAGGAGCACAGCAACTTCCATGATCAATAAAAATGTAGAAGGTGGAGGCACCGGTATTAAGGACGTGATGAAGGATGTCACCTCATTGCCTAGTATCGAGCAGGGATGGGAAGGGTCTGCTCATGATACAAGAGTGTTTCTATCGGTACTTCGAGATCTCGAAATGAATTTTCCTAAACCTCCACCGATAACTGTATTTATTTATAGTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

221

Amino Acids

25.07

Weight (kDa)

5.9

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 171, 497
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 616
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 1 cut(s) 597
AfiI CCNNNNNNNGG 3 cut(s) 123, 165, 335
AgeI ACCGGT 2 cut(s) 116, 500
AgsI TTSAA 2 cut(s) 239, 359
AjiI CACGTC 1 cut(s) 514
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 616
AsiGI ACCGGT 2 cut(s) 116, 500
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 288, 361, 380, 520
AvaI CYCGRG 1 cut(s) 373
BaeI ACNNNNGTAYC 4 cut(s) 31, 64, 567, 600
BanI GGYRCC 2 cut(s) 171, 497
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 458
BccI CCATC 4 cut(s) 11, 96, 307, 549
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 321, 540
BfmI CTRYAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 373
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 3 cut(s) 173, 395, 499
BmsI GCATC 2 cut(s) 142, 164
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 107
BsaWI WCCGGW 3 cut(s) 94, 116, 500
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 165, 335
Bse118I RCCGGY 2 cut(s) 116, 500
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 4 cut(s) 107, 155, 529, 560
BseLI CCNNNNNNNGG 3 cut(s) 123, 165, 335
BseMI GCAATG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 283
BshFI GGCC 1 cut(s) 394
BshNI GGYRCC 2 cut(s) 171, 497
BshTI ACCGGT 2 cut(s) 116, 500
BsiHKAI GWGCWC 1 cut(s) 458
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 3 cut(s) 95, 117, 501
BslI CCNNNNNNNGG 3 cut(s) 123, 165, 335
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 394
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 458
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 130, 471, 604
BspACI CCGC 1 cut(s) 403
BspANI GGCC 1 cut(s) 394
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 173, 395, 499
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 171, 497
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 2 cut(s) 116, 500
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 2 cut(s) 116, 500
BssMI GATC 3 cut(s) 130, 471, 604
BssNI GRCGYC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 643
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 288
BstF5I GGATG 4 cut(s) 107, 155, 529, 560
BstKTI GATC 3 cut(s) 133, 474, 607
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 130, 471, 604
BstNSI RCATGY 1 cut(s) 290
BstSFI CTRYAG 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 1 cut(s) 394
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 4 cut(s) 107, 155, 529, 560
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 571
Cfr10I RCCGGY 2 cut(s) 116, 500
Cfr13I GGNCC 1 cut(s) 393
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 596
CspAI ACCGGT 2 cut(s) 116, 500
CviAII CATG 4 cut(s) 262, 287, 469, 572
CviJI RGCY 3 cut(s) 5, 275, 394
CviKI_1 RGCY 3 cut(s) 5, 275, 394
CviQI GTAC 1 cut(s) 596
DpnI GATC 3 cut(s) 132, 473, 606
DpnII GATC 3 cut(s) 130, 471, 604
EciI GGCGGA 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 373
EcoT22I ATGCAT 2 cut(s) 157, 292
FaeI CATG 4 cut(s) 265, 290, 472, 575
FatI CATG 4 cut(s) 261, 286, 468, 571
FbaI TGATCA 1 cut(s) 471
FokI GGATG 4 cut(s) 114, 142, 536, 567
FspBI CTAG 2 cut(s) 321, 540
HaeIII GGCC 1 cut(s) 394
HapII CCGG 3 cut(s) 95, 117, 501
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 4 cut(s) 265, 290, 472, 575
HinfI GANTC 1 cut(s) 371
HpaII CCGG 3 cut(s) 95, 117, 501
HphI GGTGA 4 cut(s) 288, 361, 380, 520
Hpy166II GTNNAC 3 cut(s) 77, 329, 352
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 5 cut(s) 95, 178, 572, 602, 608
Hpy8I GTNNAC 3 cut(s) 77, 329, 352
HpyAV CCTTC 4 cut(s) 353, 482, 514, 554
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 3 cut(s) 155, 227, 290
HpySE526I ACGT 1 cut(s) 513
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 4 cut(s) 265, 290, 472, 575
Kpn2I TCCGGA 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 130, 471, 604
LmnI GCTCC 1 cut(s) 453
LpnPI CCDG 5 cut(s) 108, 130, 264, 514, 536
LweI GCATC 2 cut(s) 142, 164
MaeI CTAG 2 cut(s) 321, 540
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 38, 338, 368, 526
MalI GATC 3 cut(s) 132, 473, 606
MboI GATC 3 cut(s) 130, 471, 604
MboII GAAGA 2 cut(s) 251, 294
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 222, 441, 616
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 8 cut(s) 49, 91, 185, 340, 369, 488, 541, 639
Mph1103I ATGCAT 2 cut(s) 157, 292
MroI TCCGGA 1 cut(s) 94
MseI TTAA 3 cut(s) 90, 209, 507
MspI CCGG 3 cut(s) 95, 117, 501
MunI CAATTG 1 cut(s) 441
NdeII GATC 3 cut(s) 130, 471, 604
NlaIII CATG 4 cut(s) 265, 290, 472, 575
NlaIV GGNNCC 3 cut(s) 173, 395, 499
NmuCI GTSAC 3 cut(s) 38, 368, 526
NsiI ATGCAT 2 cut(s) 157, 292
NspI RCATGY 1 cut(s) 290
PaeI GCATGC 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 373
PagI TCATGA 1 cut(s) 571
PinAI ACCGGT 2 cut(s) 116, 500
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PspN4I GGNNCC 3 cut(s) 173, 395, 499
PspPI GGNCC 1 cut(s) 393
PspXI VCTCGAGB 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
SaqAI TTAA 3 cut(s) 90, 209, 507
Sau3AI GATC 3 cut(s) 130, 471, 604
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 2 cut(s) 142, 164
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 373
SmlI CTYRAG 2 cut(s) 176, 373
SmoI CTYRAG 2 cut(s) 176, 373
SphI GCATGC 1 cut(s) 290
Sse9I AATT 3 cut(s) 222, 441, 616
SsiI CCGC 1 cut(s) 403
SspMI CTAG 2 cut(s) 321, 540
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 1 cut(s) 516
TaqI TCGA 4 cut(s) 374, 546, 601, 609
TasI AATT 3 cut(s) 222, 441, 616
Tru1I TTAA 3 cut(s) 90, 209, 507
Tru9I TTAA 3 cut(s) 90, 209, 507
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 3 cut(s) 38, 368, 526
Tsp45I GTSAC 3 cut(s) 38, 368, 526
TspDTI ATGAA 3 cut(s) 250, 533, 629
TspRI CASTG 1 cut(s) 283
XapI RAATTY 1 cut(s) 616
XceI RCATGY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 373
XspI CTAG 2 cut(s) 321, 540
Zsp2I ATGCAT 2 cut(s) 157, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.