RLG00000007586
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
18709593 .. 18710650
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007586

Sequence Viewer

Length: 378 bp
ATGAAGGAGGTCGATAATGATAATCGTCCACACACTCATTTTAATGCGGCGGGATGGAAAGAATTGAAGGGGAAAGAGACCGGTCTTGTGTGGGATCACAAGAAACGGACTATTGATGCATCCGAGGAGTGGTGGCGTGGCAAAATTGAGAAAAATAAGGAATATGGCAAGTTCAAGAAAAAGGGAATTACACCCGAGTTTGATGTCAAGTTGGATAAGATGTTCATGGGTATTTTAGCCACCGGTGTGCATGCATATGCACCATCTTCTTCACTACCCATTCGTAGAAGTCCAGAGCAAGGTGGCAACCTTGAAGCATGTGGATATTCATTGGTTATTTATTATCTAAACCTTATTATACTGCAAATGGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.42

Weight (kDa)

8.91

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 50
AclWI GGATC 1 cut(s) 102
AfiI CCNNNNNNNGG 2 cut(s) 129, 299
AgeI ACCGGT 2 cut(s) 80, 242
AgsI TTSAA 3 cut(s) 67, 175, 314
AleI CACNNNNGTG 1 cut(s) 245
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 194
AsiGI ACCGGT 2 cut(s) 80, 242
AvaI CYCGRG 1 cut(s) 194
BccI CCATC 2 cut(s) 48, 271
BcoDI GTCTC 1 cut(s) 71
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 194
BmsI GCATC 2 cut(s) 106, 128
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 2 cut(s) 80, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 299
Bse118I RCCGGY 2 cut(s) 80, 242
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 59, 119
BseLI CCNNNNNNNGG 2 cut(s) 129, 299
BseRI GAGGAG 1 cut(s) 140
BshTI ACCGGT 2 cut(s) 80, 242
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 2 cut(s) 81, 243
BslI CCNNNNNNNGG 2 cut(s) 129, 299
BsmAI GTCTC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 2 cut(s) 47, 50
BspPI GGATC 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 80, 242
BssAI RCCGGY 2 cut(s) 80, 242
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 252
BstF5I GGATG 2 cut(s) 59, 119
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 94
BstNSI RCATGY 2 cut(s) 254, 321
BtsCI GGATG 2 cut(s) 59, 119
Cac8I GCNNGC 1 cut(s) 252
Cfr10I RCCGGY 2 cut(s) 80, 242
CspAI ACCGGT 2 cut(s) 80, 242
CviAII CATG 3 cut(s) 226, 251, 318
CviJI RGCY 1 cut(s) 239
CviKI_1 RGCY 1 cut(s) 239
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 194
EcoT22I ATGCAT 2 cut(s) 121, 256
FaeI CATG 3 cut(s) 229, 254, 321
FaiI YATR 7 cut(s) 165, 227, 252, 256, 258, 319, 359
FatI CATG 3 cut(s) 225, 250, 317
FauI CCCGC 1 cut(s) 43
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 66, 106
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HapII CCGG 2 cut(s) 81, 243
Hin1II CATG 3 cut(s) 229, 254, 321
HpaII CCGG 2 cut(s) 81, 243
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 175, 293
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 61
HpyCH4V TGCA 5 cut(s) 119, 250, 254, 260, 364
Hsp92II CATG 3 cut(s) 229, 254, 321
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 94, 256, 306
LweI GCATC 2 cut(s) 106, 128
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 2 cut(s) 258, 261
MluCI AATT 3 cut(s) 62, 144, 186
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 2 cut(s) 121, 256
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 3 cut(s) 42, 245, 255
MspI CCGG 2 cut(s) 81, 243
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 229, 254, 321
NsiI ATGCAT 2 cut(s) 121, 256
NspI RCATGY 2 cut(s) 254, 321
OliI CACNNNNGTG 1 cut(s) 245
PaeI GCATGC 1 cut(s) 254
PinAI ACCGGT 2 cut(s) 80, 242
PkrI GCNGC 1 cut(s) 49
RseI CAYNNNNRTG 3 cut(s) 42, 245, 255
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 94
SetI ASST 4 cut(s) 12, 304, 312, 354
SfaNI GCATC 2 cut(s) 106, 128
SgrAI CRCCGGYG 1 cut(s) 242
SmiMI CAYNNNNRTG 3 cut(s) 42, 245, 255
SphI GCATGC 1 cut(s) 254
Sse9I AATT 3 cut(s) 62, 144, 186
SsiI CCGC 2 cut(s) 47, 50
TaqI TCGA 1 cut(s) 12
TasI AATT 3 cut(s) 62, 144, 186
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 17, 214, 318
TspGWI ACGGA 1 cut(s) 121
XceI RCATGY 2 cut(s) 254, 321
Zsp2I ATGCAT 2 cut(s) 121, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.