Rmu_sc0003505.1_g000025
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003505.1
OG0000240
Physical Location & Seq
Forward (+)
117006 .. 117284
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003505.1_g000025.1.cds

Sequence Viewer

Length: 279 bp
atgggagggccaaaggggatgaaaggaagggtgggagatgcagcgaaattgtctaaacaaattgatcgtcttgttgatgtagttgagagtaagagtacagtgacatcagttcatacaagttcacaaggaactagtattcaggaggtgatgcgagttgttgcaagtttaccaagagtagaaattggtaccaagctgtggtggtttgcaatagagttgttttgctctcaagagaagcaagagatgctttcaattatgacagatcatgatctcaagctatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

7.9

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 195
AfaI GTAC 2 cut(s) 97, 187
AfiI CCNNNNNNNGG 1 cut(s) 195
AgsI TTSAA 1 cut(s) 249
AhlI ACTAGT 1 cut(s) 131
AluBI AGCT 2 cut(s) 193, 274
AluI AGCT 2 cut(s) 193, 274
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
Asp718I GGTACC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 53
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 3 cut(s) 28, 138, 231
BpuEI CTTGAG 2 cut(s) 210, 254
BsaBI GATNNNNATC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 264
BseGI GGATG 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 195
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 64, 259, 265
BspANI GGCC 1 cut(s) 10
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 185
BssMI GATC 3 cut(s) 64, 259, 265
Bst4CI ACNGT 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 241
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 3 cut(s) 67, 262, 268
BstMBI GATC 3 cut(s) 64, 259, 265
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 105
CciI TCATGA 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 2 cut(s) 96, 186
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 10, 193, 274
CviKI_1 RGCY 3 cut(s) 10, 193, 274
CviQI GTAC 2 cut(s) 96, 186
DpnI GATC 3 cut(s) 66, 261, 267
DpnII GATC 3 cut(s) 64, 259, 265
FaeI CATG 1 cut(s) 266
FaiI YATR 4 cut(s) 114, 254, 264, 277
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 266
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 122, 167
Hpy188III TCNNGA 3 cut(s) 140, 227, 263
Hpy8I GTNNAC 2 cut(s) 122, 167
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 41, 161, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
Hsp92II CATG 1 cut(s) 266
KpnI GGTACC 1 cut(s) 189
Kzo9I GATC 3 cut(s) 64, 259, 265
LpnPI CCDG 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 3 cut(s) 28, 138, 231
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 66, 261, 267
MboI GATC 3 cut(s) 64, 259, 265
MluCI AATT 4 cut(s) 47, 60, 180, 249
MnlI CCTC 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 3 cut(s) 64, 259, 265
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 8
RsaI GTAC 2 cut(s) 97, 187
RsaNI GTAC 2 cut(s) 96, 186
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 3 cut(s) 64, 259, 265
Sau96I GGNCC 1 cut(s) 8
SetI ASST 3 cut(s) 147, 195, 276
SfaNI GCATC 3 cut(s) 28, 138, 231
SfcI CTRYAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 225, 269
SmoI CTYRAG 2 cut(s) 225, 269
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 4 cut(s) 47, 60, 180, 249
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 100
TasI AATT 4 cut(s) 47, 60, 180, 249
TatI WGTACW 1 cut(s) 95
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 35, 101
TspRI CASTG 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 195
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.