Prupe.5G020800_v2.0.a1
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000240
Physical Location & Seq
Forward (+)
2249982 .. 2252993
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G020800.1

Sequence Viewer

Length: 906 bp
ATGGGAAAGAATGTGGGAAGTTCATCAAAAGCTCCAGCGACATGGAATAACCATAATATATCCATATTCTGTGATTTGTGCATCAAGGAGGTGGATGCCGGACGTCGTCCTGGCACTCATTTTAAAAAAGAAGGATGGGAAAATTTGAGAGTCAACTTTAGTAAAGAGACAGGAAATAATTATGATAAAGGGCAATTGAAAAATAAGTGGGATGCACTCAAAATTGAGTGGAAATTGTGGAAAGAACTCGTAGGCAAAGAAACTGGTCTAGGGTGGAATTCGAGCAAAGGTACTGTTGATGCATCTGATGAGTGGTGGAATAATAAAATTCAGATAAATGCTGAATATGCAAAGTTACGTAAAAAAGGCATTAATCCTGAGATGGAGGAGAAGCTAGATAGGATGTTCATGAATACCACGGCCACTGGTGAACATGCTTGGGCACCTTCATGTGGTATACTCCCATCAGAAACTGAAGAGGCATCCATGGGTGATGTTATTCCACTCGAAGGAAGTGATGACTCAGATGAAACAATTCAAGCTATCAAAAATGCTACAAAGAAAGGGAAAAGGAGAGCACCTGAACAATTGAATAAAAAACAGCAAGATAAGAAAGGAAGAAAAGTTGGAGGTGCTGAAAAACTAGCTGGCCAAATTGACCGCCTTGTTGGTGTAGTTGAGAGTAGGAGCACAGCAACATCATTGATGATGAAAATGCAACTGGGCAGTAGTATTCCTGAAGTGATGGAAGTTGTATCATCTCTACCTGGATGTGAACCTACTAGCACTTTGTGGATGTTTGCGACTCGATTATTTTTGAATCAAGAGAAGCGAGAGATGTTCTCTACCATGAAGACTCCTAATGTCAAGCTTGCATGGCTAACTTATGAATTTAACAACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

302

Amino Acids

33.87

Weight (kDa)

8.85

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 457
AciI CCGC 1 cut(s) 661
AcoI YGGCCR 2 cut(s) 420, 649
AcsI RAATTY 4 cut(s) 142, 277, 327, 890
AcuI CTGAAG 2 cut(s) 495, 759
AcyI GRCGYC 1 cut(s) 103
AdeI CACNNNGTG 1 cut(s) 792
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 452, 509
AgsI TTSAA 4 cut(s) 199, 539, 592, 820
AjnI CCWGG 2 cut(s) 109, 766
AluBI AGCT 5 cut(s) 32, 394, 542, 647, 871
AluI AGCT 5 cut(s) 32, 394, 542, 647, 871
Alw21I GWGCWC 2 cut(s) 580, 692
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 473
AoxI GGCC 2 cut(s) 420, 649
ApoI RAATTY 4 cut(s) 142, 277, 327, 890
AseI ATTAAT 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 534
AsuHPI GGTGA 2 cut(s) 440, 503
BaeGI GKGCMC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 651
BanI GGYRCC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 860
Bbv12I GWGCWC 2 cut(s) 580, 692
BccI CCATC 4 cut(s) 129, 376, 472, 739
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 2 cut(s) 111, 768
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 4 cut(s) 269, 395, 644, 783
Bme1390I CCNGG 2 cut(s) 111, 768
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 111, 768
BmrI ACTGGG 1 cut(s) 731
BmsI GCATC 6 cut(s) 85, 90, 202, 289, 311, 491
BmuI ACTGGG 1 cut(s) 731
BpiI GAAGAC 1 cut(s) 860
BplI GAGNNNNNCTC 2 cut(s) 827, 859
BpmI CTGGAG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 417, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 509
Bse1I ACTGG 3 cut(s) 268, 430, 726
BseBI CCWGG 2 cut(s) 111, 768
BseDI CCNNGG 2 cut(s) 417, 486
BseGI GGATG 7 cut(s) 100, 140, 217, 408, 482, 776, 801
BseLI CCNNNNNNNGG 2 cut(s) 452, 509
BseMII CTCAG 2 cut(s) 369, 537
BseNI ACTGG 3 cut(s) 268, 430, 726
BseRI GAGGAG 1 cut(s) 401
BseSI GKGCMC 1 cut(s) 445
BshFI GGCC 2 cut(s) 422, 651
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 580, 692
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 452, 509
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 422, 651
Bsp1286I GDGCHC 3 cut(s) 445, 580, 692
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 1 cut(s) 661
BspANI GGCC 2 cut(s) 422, 651
BspCNI CTCAG 2 cut(s) 370, 536
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 442
BsrI ACTGG 3 cut(s) 268, 430, 726
BssECI CCNNGG 2 cut(s) 417, 486
BssNAI GTATAC 1 cut(s) 458
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 486
Bst1107I GTATAC 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 111, 768
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 649, 873
BstDEI CTNAG 2 cut(s) 378, 523
BstDSI CCRYGG 2 cut(s) 417, 486
BstF5I GGATG 7 cut(s) 100, 140, 217, 408, 482, 776, 801
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 347, 877
BstNI CCWGG 2 cut(s) 111, 768
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 109, 766
BstSLI GKGCMC 1 cut(s) 445
BstSNI TACGTA 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 860
BstXI CCANNNNNNTGG 1 cut(s) 42
BstZ17I GTATAC 1 cut(s) 458
BsuRI GGCC 2 cut(s) 422, 651
BtgI CCRYGG 2 cut(s) 417, 486
BtsCI GGATG 7 cut(s) 100, 140, 217, 408, 482, 776, 801
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 2 cut(s) 649, 873
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 408
Csp6I GTAC 1 cut(s) 291
CviAII CATG 7 cut(s) 42, 409, 434, 450, 487, 850, 876
CviJI RGCY 8 cut(s) 32, 394, 422, 542, 647, 651, 871, 880
CviKI_1 RGCY 8 cut(s) 32, 394, 422, 542, 647, 651, 871, 880
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 378, 523
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 792
EaeI YGGCCR 2 cut(s) 420, 649
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco105I TACGTA 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 486
Eco57I CTGAAG 2 cut(s) 495, 759
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 109, 766
EcoT14I CCWWGG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 7 cut(s) 45, 412, 437, 453, 490, 853, 879
FatI CATG 7 cut(s) 41, 408, 433, 449, 486, 849, 875
FblI GTMKAC 1 cut(s) 457
FokI GGATG 7 cut(s) 107, 147, 224, 415, 469, 783, 808
FspBI CTAG 4 cut(s) 269, 395, 644, 783
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 422, 651
HapII CCGG 1 cut(s) 99
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 7 cut(s) 45, 412, 437, 453, 490, 853, 879
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 5 cut(s) 150, 521, 805, 820, 856
HpaII CCGG 1 cut(s) 99
HphI GGTGA 2 cut(s) 440, 503
Hpy166II GTNNAC 4 cut(s) 154, 431, 458, 776
Hpy188I TCNGA 4 cut(s) 307, 333, 469, 526
Hpy188III TCNNGA 4 cut(s) 377, 409, 737, 824
Hpy8I GTNNAC 4 cut(s) 154, 431, 458, 776
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 125, 456, 503
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 2 cut(s) 103, 358
HpyCH4V TGCA 6 cut(s) 81, 215, 302, 350, 718, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 877
HpyF3I CTNAG 2 cut(s) 378, 523
HpySE526I ACGT 2 cut(s) 103, 358
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 7 cut(s) 45, 412, 437, 453, 490, 853, 879
LmnI GCTCC 2 cut(s) 37, 687
LweI GCATC 6 cut(s) 85, 90, 202, 289, 311, 491
MaeI CTAG 4 cut(s) 269, 395, 644, 783
MaeII ACGT 2 cut(s) 103, 358
MaeIII GTNAC 1 cut(s) 354
MboII GAAGA 3 cut(s) 488, 630, 865
MfeI CAATTG 2 cut(s) 194, 587
MhlI GDGCHC 3 cut(s) 445, 580, 692
MlsI TGGCCA 1 cut(s) 651
MluNI TGGCCA 1 cut(s) 651
MlyI GAGTC 4 cut(s) 159, 515, 799, 850
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 4 cut(s) 82, 379, 472, 623
Mox20I TGGCCA 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 534
MscI TGGCCA 1 cut(s) 651
MseI TTAA 3 cut(s) 123, 372, 894
MslI CAYNNNNRTG 1 cut(s) 448
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 111, 768
MunI CAATTG 2 cut(s) 194, 587
MvaI CCWGG 2 cut(s) 111, 768
MwoI GCNNNNNNNGC 2 cut(s) 347, 877
NcoI CCATGG 1 cut(s) 486
NlaIII CATG 7 cut(s) 45, 412, 437, 453, 490, 853, 879
NlaIV GGNNCC 1 cut(s) 444
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 437
PagI TCATGA 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 820
PflFI GACNNNGTC 1 cut(s) 105
PleI GAGTC 4 cut(s) 158, 515, 799, 850
PpsI GAGTC 4 cut(s) 158, 515, 799, 850
Ppu21I YACGTR 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 372
Psp6I CCWGG 2 cut(s) 109, 766
PspGI CCWGG 2 cut(s) 109, 766
PspN4I GGNNCC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 473
PsyI GACNNNGTC 1 cut(s) 105
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 448
SaqAI TTAA 3 cut(s) 123, 372, 894
SchI GAGTC 4 cut(s) 159, 515, 799, 850
ScrFI CCNGG 2 cut(s) 111, 768
SduI GDGCHC 3 cut(s) 445, 580, 692
SfaNI GCATC 6 cut(s) 85, 90, 202, 289, 311, 491
SmiMI CAYNNNNRTG 1 cut(s) 448
SnaBI TACGTA 1 cut(s) 359
SsiI CCGC 1 cut(s) 661
SspMI CTAG 4 cut(s) 269, 395, 644, 783
StyD4I CCNGG 2 cut(s) 109, 766
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 2 cut(s) 106, 361
TaqI TCGA 3 cut(s) 281, 507, 808
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 3 cut(s) 123, 372, 894
Tru9I TTAA 3 cut(s) 123, 372, 894
TscAI CASTG 1 cut(s) 430
TspDTI ATGAA 8 cut(s) 12, 397, 425, 438, 543, 725, 866, 903
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 105
VspI ATTAAT 1 cut(s) 372
XapI RAATTY 4 cut(s) 142, 277, 327, 890
XceI RCATGY 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 4 cut(s) 269, 395, 644, 783
ZraI GACGTC 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.