RLG00000008509
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
31519324 .. 31521891
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008509

Sequence Viewer

Length: 465 bp
ATGACAACAGCAATAGCTATTGAAGATGTCCGTAGAGAGGGGAAAGAGACCGGTCTTGGGTGGGATCACAAGCTCCAAACTATTGATGCATCCGATGAGTGGTGGCATGGCAAAATTGAGAAAAACAAGGAATATGCAAAATTAAGGAAAAAGGAATTTACACTCGATTTTGAAGTCAAGTTGGATAAGATGTTCATGGGTATTTCAGTCACTGGTGTCCATGCATATGCACCATCTTCTTCACTACCTATCCCTAGATGTCTAGAGCAAGGTGACAATGATAATAACCTTGAAGATTGTGGTGACTCTGAGGACAATATTCAGCCCAAAACCACTATGCCTAAAGAAGAAAGAAATGAGAGAGTTGAGAAAGGTAAAGGAGTGACTAAAAACTTAAAAGGAACAACACACAAGAACCCTACATCCCGAAGAGAGTATTTTTGCTCTCCTTATCGTCCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.69

Weight (kDa)

6.44

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 37, 57, 99
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 3 cut(s) 23, 173, 293
AloI GAACNNNNNNTCC 4 cut(s) 176, 208, 407, 439
AluBI AGCT 2 cut(s) 17, 73
AluI AGCT 2 cut(s) 17, 73
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 72
AlwNI CAGNNNCTG 1 cut(s) 212
ApoI RAATTY 1 cut(s) 155
AsiGI ACCGGT 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 284, 314
BccI CCATC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 255, 263
BmsI GCATC 2 cut(s) 76, 98
BsaI GGTCTC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 57, 99
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 89, 422
BseLI CCNNNNNNNGG 3 cut(s) 37, 57, 99
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 217
BshTI ACCGGT 1 cut(s) 50
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 37, 57, 99
BsmAI GTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 50
BssMI GATC 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 424
BstDEI CTNAG 2 cut(s) 309, 459
BstF5I GGATG 2 cut(s) 89, 422
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 89, 422
BtsIMutI CAGTG 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 50
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 3 cut(s) 107, 196, 221
CviJI RGCY 3 cut(s) 17, 73, 325
CviKI_1 RGCY 3 cut(s) 17, 73, 325
DdeI CTNAG 2 cut(s) 309, 459
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 41
EcoT22I ATGCAT 2 cut(s) 91, 226
FaeI CATG 3 cut(s) 110, 199, 224
FaiI YATR 7 cut(s) 108, 135, 197, 222, 226, 228, 338
FatI CATG 3 cut(s) 106, 195, 220
FauNDI CATATG 1 cut(s) 226
FokI GGATG 2 cut(s) 76, 409
FspBI CTAG 2 cut(s) 255, 263
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 110, 199, 224
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 51
HphI GGTGA 2 cut(s) 284, 314
Hpy188I TCNGA 2 cut(s) 94, 310
Hpy188III TCNNGA 2 cut(s) 263, 426
HpyCH4V TGCA 4 cut(s) 89, 137, 224, 230
HpyF3I CTNAG 2 cut(s) 309, 459
Hsp92II CATG 3 cut(s) 110, 199, 224
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 64, 198
LweI GCATC 2 cut(s) 76, 98
MaeI CTAG 2 cut(s) 255, 263
MaeIII GTNAC 4 cut(s) 208, 272, 302, 382
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 6 cut(s) 35, 228, 231, 305, 359, 441
MluCI AATT 3 cut(s) 114, 140, 155
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 2 cut(s) 31, 304
Mph1103I ATGCAT 2 cut(s) 91, 226
MseI TTAA 2 cut(s) 143, 395
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 226
NdeII GATC 1 cut(s) 64
NlaIII CATG 3 cut(s) 110, 199, 224
NmuCI GTSAC 4 cut(s) 208, 272, 302, 382
NsiI ATGCAT 2 cut(s) 91, 226
PinAI ACCGGT 1 cut(s) 50
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PstNI CAGNNNCTG 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 143, 395
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 299
SetI ASST 6 cut(s) 19, 75, 250, 274, 291, 376
SfaNI GCATC 2 cut(s) 76, 98
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 114, 140, 155
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 255, 263
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 114, 140, 155
Tru1I TTAA 2 cut(s) 143, 395
Tru9I TTAA 2 cut(s) 143, 395
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 4 cut(s) 208, 272, 302, 382
Tsp45I GTSAC 4 cut(s) 208, 272, 302, 382
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 262
XspI CTAG 2 cut(s) 255, 263
Zsp2I ATGCAT 2 cut(s) 91, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.