Rmu_sc0003526.1_g000016
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003526.1
OG0000240
Physical Location & Seq
Reverse (-)
95853 .. 96404
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003526.1_g000016.1.cds

Sequence Viewer

Length: 552 bp
atgatggctgtttatgacaacatgttcaggggtagcacagctctaagtcattttgtcatgattccctcagctactatagatattgaagaggttgtggaggattcagagcataatttaatttctggagatgatgaagaggattctgaccaagataatgaacgtagaggcaaaaagagaacaaatttggagcaccaaacagaggctgataaacaaaaaaaaggaaaaggagttatgggagggccaaaggggaaggctaaaaaggtgggaggtgcggcgaaattgtctaaacaaatcgatcgtcttgttgatgtagtcgagagtatgagtacagccacatctgtacgtgataatggtacctcacaaggaactagtattaaagaggtgatgagagttgttgcaacattaccgggaccaaaaaccggtacgaagctatggtggtttgcaacggagttgttctgctctcaggagaagcgagagatgttttctattatgacagatgctaatctcaagctccagtttctgattcttaatcagaaaaaagctgaaaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

6.33

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 353
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 4 cut(s) 328, 342, 355, 424
AfiI CCNNNNNNNGG 2 cut(s) 199, 419
AflIII ACRYGT 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 1 cut(s) 86
AhlI ACTAGT 1 cut(s) 368
AluBI AGCT 5 cut(s) 41, 71, 430, 511, 542
AluI AGCT 5 cut(s) 41, 71, 430, 511, 542
Alw21I GWGCWC 1 cut(s) 192
AlwNI CAGNNNCTG 2 cut(s) 203, 520
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AsiGI ACCGGT 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 239, 410
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 408
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 239, 410
BmiI GGNNCC 2 cut(s) 355, 411
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 144, 497
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 408
Bsa29I ATCGAT 1 cut(s) 294
BsaAI YACGTR 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 501
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 419
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 501
BseCI ATCGAT 1 cut(s) 294
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 199, 419
BseMII CTCAG 2 cut(s) 81, 476
BseNI ACTGG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 407, 420
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 199, 419
BsmFI GGGAC 1 cut(s) 423
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 2 cut(s) 80, 475
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 355, 411
BspT107I GGYRCC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 419
BssMI GATC 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 81, 129
BstBAI YACGTR 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 44, 67, 462
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 294
CaiI CAGNNNCTG 2 cut(s) 203, 520
CciI TCATGA 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 239, 410
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 4 cut(s) 327, 341, 354, 423
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 2 cut(s) 22, 58
CviQI GTAC 4 cut(s) 327, 341, 354, 423
DdeI CTNAG 3 cut(s) 44, 67, 462
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 81, 129
EarI CTCTTC 2 cut(s) 81, 129
Eco47I GGWCC 1 cut(s) 410
FaeI CATG 2 cut(s) 25, 61
FaiI YATR 9 cut(s) 15, 23, 59, 77, 111, 233, 323, 433, 491
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 21, 57
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 2 cut(s) 144, 497
HaeIII GGCC 1 cut(s) 241
HapII CCGG 2 cut(s) 407, 420
Hin1II CATG 2 cut(s) 25, 61
HinfI GANTC 4 cut(s) 61, 101, 140, 523
HpaII CCGG 2 cut(s) 407, 420
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 4 cut(s) 106, 145, 522, 534
Hpy188III TCNNGA 4 cut(s) 58, 123, 316, 464
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 160, 343
HpyCH4V TGCA 2 cut(s) 398, 443
HpyF3I CTNAG 3 cut(s) 44, 67, 462
HpySE526I ACGT 2 cut(s) 160, 343
Hsp92II CATG 2 cut(s) 25, 61
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 187, 516
LpnPI CCDG 6 cut(s) 13, 108, 420, 433, 449, 527
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 160, 343
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 2 cut(s) 98, 146
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 5 cut(s) 112, 117, 181, 278, 547
MseI TTAA 3 cut(s) 116, 375, 528
MspI CCGG 2 cut(s) 407, 420
MspR9I CCNGG 1 cut(s) 408
NciI CCSGG 1 cut(s) 408
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 25, 61
NlaIV GGNNCC 2 cut(s) 355, 411
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 4 cut(s) 61, 101, 140, 523
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 1 cut(s) 274
Ple19I CGATCG 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 344
PscI ACATGT 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 355, 411
PspPI GGNCC 2 cut(s) 239, 410
PstNI CAGNNNCTG 2 cut(s) 203, 520
PvuI CGATCG 1 cut(s) 298
RsaI GTAC 4 cut(s) 328, 342, 355, 424
RsaNI GTAC 4 cut(s) 327, 341, 354, 423
SaqAI TTAA 3 cut(s) 116, 375, 528
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 2 cut(s) 239, 410
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 1 cut(s) 487
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 5 cut(s) 112, 117, 181, 278, 547
SsiI CCGC 1 cut(s) 272
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 406
TaiI ACGT 2 cut(s) 163, 346
TaqI TCGA 2 cut(s) 294, 315
TasI AATT 5 cut(s) 112, 117, 181, 278, 547
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 4 cut(s) 61, 101, 140, 523
Tru1I TTAA 3 cut(s) 116, 375, 528
Tru9I TTAA 3 cut(s) 116, 375, 528
TspDTI ATGAA 2 cut(s) 147, 171
TspGWI ACGGA 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 25
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.