Rmu_sc0038865.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038865.1
OG0000240
Physical Location & Seq
Forward (+)
1462 .. 2365
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038865.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgattggaaattgtggagttcgttgttgcataaggaaactggtattagatgggatccagctaggaagactgtcgatgcacctgctgaatggtgggaagactgtcgatccagctaggattcagatcaatctagagtattgcaaattttgcgacgtgggaattagtcctgacttgatggctgtttatgataacatgttcaagggtagtacaaccctaggtcacaatgtcatgattctctcagctactatagatattgaagaggttgtggaggattctgagcataatttaatttctgaagatgatgaagaggattctgagcaagtcgaaagtaggagtacagccacatctgtccgtgataatggtacctcacaaggaaatagtattcgagaagtgatgagagttgttgcaacattaccaggagcagaaactggtaccaagctatggtggtttgcaacggagttgttttgttctcaggagaagcgtgagatgttttctattatgacagatgctgatttgaagctccagtttctgattcttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

180

Amino Acids

20.04

Weight (kDa)

4.6

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 90
Acc65I GGTACC 2 cut(s) 362, 431
AccB1I GGYRCC 2 cut(s) 362, 431
AccB7I CCANNNNNTGG 1 cut(s) 441
AclWI GGATC 3 cut(s) 49, 62, 101
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 4 cut(s) 208, 337, 364, 433
AfiI CCNNNNNNNGG 1 cut(s) 441
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 199, 257, 517
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 5 cut(s) 61, 113, 242, 439, 520
AluI AGCT 5 cut(s) 61, 113, 242, 439, 520
AlwI GGATC 3 cut(s) 49, 62, 101
AlwNI CAGNNNCTG 3 cut(s) 428, 509, 529
ApoI RAATTY 1 cut(s) 143
Asp718I GGTACC 2 cut(s) 362, 431
AspA2I CCTAGG 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 214
BamHI GGATCC 1 cut(s) 54
BanI GGYRCC 2 cut(s) 362, 431
BbsI GAAGAC 2 cut(s) 73, 104
BccI CCATC 2 cut(s) 44, 169
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BciT130I CCWGG 1 cut(s) 417
BfaI CTAG 4 cut(s) 62, 114, 131, 215
BfmI CTRYAG 1 cut(s) 246
BfuAI ACCTGC 1 cut(s) 90
BlnI CCTAGG 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 417
BmgBI CACGTC 1 cut(s) 154
BmiI GGNNCC 3 cut(s) 56, 364, 433
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 2 cut(s) 66, 496
BpiI GAAGAC 2 cut(s) 73, 104
BpmI CTGGAG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse1I ACTGG 3 cut(s) 45, 433, 523
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMII CTCAG 4 cut(s) 252, 267, 306, 485
BseNI ACTGG 3 cut(s) 45, 433, 523
BshNI GGYRCC 2 cut(s) 362, 431
BslI CCNNNNNNNGG 1 cut(s) 441
Bsp143I GATC 3 cut(s) 54, 106, 123
BspCNI CTCAG 4 cut(s) 251, 268, 307, 484
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 56, 364, 433
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 3 cut(s) 49, 62, 101
BspT107I GGYRCC 2 cut(s) 362, 431
BsrI ACTGG 3 cut(s) 45, 433, 523
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 54, 106, 123
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 2 cut(s) 72, 103
Bst6I CTCTTC 2 cut(s) 252, 300
BstAPI GCANNNNNTGC 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 238, 276, 315, 471
BstKTI GATC 3 cut(s) 57, 109, 126
BstMBI GATC 3 cut(s) 54, 106, 123
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 417
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 415
BstSFI CTRYAG 1 cut(s) 246
BstV2I GAAGAC 2 cut(s) 73, 104
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
BtrI CACGTC 1 cut(s) 154
BveI ACCTGC 1 cut(s) 90
CaiI CAGNNNCTG 3 cut(s) 428, 509, 529
CciI TCATGA 1 cut(s) 228
Csp6I GTAC 4 cut(s) 207, 336, 363, 432
CviAII CATG 2 cut(s) 193, 229
CviJI RGCY 7 cut(s) 61, 113, 179, 242, 341, 439, 520
CviKI_1 RGCY 7 cut(s) 61, 113, 179, 242, 341, 439, 520
CviQI GTAC 4 cut(s) 207, 336, 363, 432
DdeI CTNAG 4 cut(s) 238, 276, 315, 471
DpnI GATC 3 cut(s) 56, 108, 125
DpnII GATC 3 cut(s) 54, 106, 123
Eam1104I CTCTTC 2 cut(s) 252, 300
EarI CTCTTC 2 cut(s) 252, 300
Eco130I CCWWGG 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 2 cut(s) 196, 232
FaiI YATR 8 cut(s) 32, 186, 194, 230, 248, 282, 442, 500
FatI CATG 2 cut(s) 192, 228
FspBI CTAG 4 cut(s) 62, 114, 131, 215
GsuI CTGGAG 1 cut(s) 506
Hin1II CATG 2 cut(s) 196, 232
HinfI GANTC 5 cut(s) 118, 232, 272, 311, 532
Hpy188I TCNGA 5 cut(s) 123, 277, 295, 316, 531
Hpy188III TCNNGA 5 cut(s) 131, 167, 229, 386, 473
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 2 cut(s) 72, 103
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 30, 79, 141, 407, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 4 cut(s) 238, 276, 315, 471
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 196, 232
KpnI GGTACC 2 cut(s) 366, 435
Kzo9I GATC 3 cut(s) 54, 106, 123
LmnI GCTCC 2 cut(s) 419, 525
LweI GCATC 2 cut(s) 66, 496
MaeI CTAG 4 cut(s) 62, 114, 131, 215
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 218
MalI GATC 3 cut(s) 56, 108, 125
MboI GATC 3 cut(s) 54, 106, 123
MboII GAAGA 5 cut(s) 78, 109, 269, 308, 317
MflI RGATCY 1 cut(s) 54
MluCI AATT 6 cut(s) 10, 143, 159, 283, 288, 538
MnlI CCTC 4 cut(s) 253, 262, 301, 376
MseI TTAA 2 cut(s) 287, 537
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 3 cut(s) 54, 106, 123
NlaIII CATG 2 cut(s) 196, 232
NlaIV GGNNCC 3 cut(s) 56, 364, 433
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 90
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 5 cut(s) 118, 232, 272, 311, 532
PflMI CCANNNNNTGG 1 cut(s) 441
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 415
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 56, 364, 433
PstNI CAGNNNCTG 3 cut(s) 428, 509, 529
PsuI RGATCY 1 cut(s) 54
RsaI GTAC 4 cut(s) 208, 337, 364, 433
RsaNI GTAC 4 cut(s) 207, 336, 363, 432
SaqAI TTAA 2 cut(s) 287, 537
Sau3AI GATC 3 cut(s) 54, 106, 123
ScrFI CCNGG 1 cut(s) 417
SfaNI GCATC 2 cut(s) 66, 496
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 6 cut(s) 10, 143, 159, 283, 288, 538
SspMI CTAG 4 cut(s) 62, 114, 131, 215
StyD4I CCNGG 1 cut(s) 415
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 2 cut(s) 72, 103
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 74, 105, 324, 385
TasI AATT 6 cut(s) 10, 143, 159, 283, 288, 538
TatI WGTACW 2 cut(s) 206, 335
TfiI GAWTC 5 cut(s) 118, 232, 272, 311, 532
Tru1I TTAA 2 cut(s) 287, 537
Tru9I TTAA 2 cut(s) 287, 537
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 341, 470
Van91I CCANNNNNTGG 1 cut(s) 441
XapI RAATTY 1 cut(s) 143
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 1 cut(s) 196
XmaJI CCTAGG 1 cut(s) 214
XspI CTAG 4 cut(s) 62, 114, 131, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.