Rmu_sc0020751.1_g000003
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020751.1
OG0000240
Physical Location & Seq
Forward (+)
4483 .. 7139
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020751.1_g000003.1.cds

Sequence Viewer

Length: 555 bp
atggaggtatttggcttgggattgagatttgatggtaatggcgtttttgaagaaggttttgagcaggagggcggccataaagaggctgaggaagaggatgaagagcataactctgccaccatcgaactcaccgagatcaatctagagtattgcaaattttgcgacgtgggaattagtcctgacttgatggctgtttatgataacatgttcaagggtagtacaaccctaggtcacaatgtcatgattctctcagctactatagatattgaagaggttgtggaggattctgagcataatttaatttctgaagatgatgaagaggattctgagcaagttgaaagtaggagtacagccacatctgtccgtgataatggtacctcacaaggaaatagtattcaagaagtgatgagagttgttgcaacattaccaggagcagaaactggtaccaagctatggtggtttgcaacggagttgttttgttctcaggagaagcgtgagatgttttctattatgacagatgctgatttgaagctccagtttctgattcttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

184

Amino Acids

20.61

Weight (kDa)

4.08

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 374, 443
AccB1I GGYRCC 2 cut(s) 374, 443
AccB7I CCANNNNNTGG 1 cut(s) 453
AciI CCGC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 4 cut(s) 220, 349, 376, 445
AfiI CCNNNNNNNGG 2 cut(s) 82, 453
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 6 cut(s) 50, 211, 269, 338, 398, 529
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 254, 451, 532
AluI AGCT 3 cut(s) 254, 451, 532
AlwNI CAGNNNCTG 3 cut(s) 440, 521, 541
AoxI GGCC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 155
Asp718I GGTACC 2 cut(s) 374, 443
AspA2I CCTAGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 226
BanI GGYRCC 2 cut(s) 374, 443
BbvCI CCTCAGC 1 cut(s) 87
BccI CCATC 3 cut(s) 26, 128, 181
BciT130I CCWGG 1 cut(s) 429
BfaI CTAG 2 cut(s) 143, 227
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 73
BlnI CCTAGG 1 cut(s) 226
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 376, 445
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 453
Bse1I ACTGG 2 cut(s) 445, 535
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 82, 453
BseMII CTCAG 5 cut(s) 78, 264, 279, 318, 497
BseNI ACTGG 2 cut(s) 445, 535
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 2 cut(s) 374, 443
BslI CCNNNNNNNGG 2 cut(s) 82, 453
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 5 cut(s) 79, 263, 280, 319, 496
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 376, 445
BspQI GCTCTTC 1 cut(s) 96
BspT107I GGYRCC 2 cut(s) 374, 443
BsrI ACTGG 2 cut(s) 445, 535
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 4 cut(s) 87, 96, 264, 312
BstAPI GCANNNNNTGC 1 cut(s) 159
BstDEI CTNAG 5 cut(s) 87, 250, 288, 327, 483
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 258
BsuRI GGCC 1 cut(s) 75
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 103
CaiI CAGNNNCTG 3 cut(s) 440, 521, 541
CciI TCATGA 1 cut(s) 240
Csp6I GTAC 4 cut(s) 219, 348, 375, 444
CviAII CATG 2 cut(s) 205, 241
CviJI RGCY 8 cut(s) 15, 75, 86, 191, 254, 353, 451, 532
CviKI_1 RGCY 8 cut(s) 15, 75, 86, 191, 254, 353, 451, 532
CviQI GTAC 4 cut(s) 219, 348, 375, 444
DdeI CTNAG 5 cut(s) 87, 250, 288, 327, 483
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 4 cut(s) 87, 96, 264, 312
EarI CTCTTC 4 cut(s) 87, 96, 264, 312
Eco130I CCWWGG 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 2 cut(s) 208, 244
FaiI YATR 9 cut(s) 78, 108, 198, 206, 242, 260, 294, 454, 512
FatI CATG 2 cut(s) 204, 240
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 2 cut(s) 143, 227
GluI GCNGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 2 cut(s) 208, 244
HinfI GANTC 4 cut(s) 244, 284, 323, 544
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 289, 307, 328, 543
Hpy188III TCNNGA 5 cut(s) 143, 179, 241, 398, 485
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 153, 419, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 5 cut(s) 87, 250, 288, 327, 483
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 208, 244
KpnI GGTACC 2 cut(s) 378, 447
Kzo9I GATC 1 cut(s) 135
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 431, 537
LpnPI CCDG 7 cut(s) 50, 192, 414, 426, 441, 470, 548
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 143, 227
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 6 cut(s) 62, 104, 113, 281, 320, 329
MluCI AATT 5 cut(s) 155, 171, 295, 300, 550
MnlI CCTC 8 cut(s) 61, 76, 82, 88, 265, 274, 313, 388
MseI TTAA 2 cut(s) 299, 549
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 159
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 208, 244
NlaIV GGNNCC 2 cut(s) 376, 445
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 208
PagI TCATGA 1 cut(s) 240
PciI ACATGT 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 4 cut(s) 244, 284, 323, 544
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 1 cut(s) 74
PscI ACATGT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 376, 445
PstNI CAGNNNCTG 3 cut(s) 440, 521, 541
RsaI GTAC 4 cut(s) 220, 349, 376, 445
RsaNI GTAC 4 cut(s) 219, 348, 375, 444
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 299, 549
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 429
SetI ASST 9 cut(s) 9, 58, 168, 232, 256, 276, 380, 453, 534
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 258
Sse9I AATT 5 cut(s) 155, 171, 295, 300, 550
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 143, 227
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 123
TasI AATT 5 cut(s) 155, 171, 295, 300, 550
TatI WGTACW 2 cut(s) 218, 347
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 4 cut(s) 244, 284, 323, 544
Tru1I TTAA 2 cut(s) 299, 549
Tru9I TTAA 2 cut(s) 299, 549
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 114, 330
TspGWI ACGGA 2 cut(s) 353, 482
Van91I CCANNNNNTGG 1 cut(s) 453
XapI RAATTY 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 208
XmaJI CCTAGG 1 cut(s) 226
XspI CTAG 2 cut(s) 143, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.