FvH4_6g39920
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000240
Physical Location & Seq
Forward (+)
31536495 .. 31539723
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39920.t1

Sequence Viewer

Length: 1401 bp
ATGAGGGGCTTTGCTTTTAAGCACCTCTGTTTTCAGTCCAAAAGCCAAAGCCAGCTATCAGGTGCTTCTGAAAGCCTGAAGCGCTTCCAAAGCACTGTGGCGCTGTTAAGACTGCCCTTCTCGCTTAACCTGCCGTTCTCCCTCAGCTCTCTTCCTGTTCTCTCTTCTCCCTTAGCTCTCTTTCTGTTCTCTCTTCTCCCTCTGCCCTTCGTTTTCGCTCACCACTTTCAGGATTTTGTGTTGCGCAGTCCTTCAGGGAAGCTTGTGCAGATCGAGCACGCTTTGACGGCAGTCGGGTCGGGTCAGACCTCTTTGGGTATCAAAGGTAATGTTGCTGCTCCGGGTTTTTACCTTACGCTTGTGAGAGCTAGAGTTTATAGGCTTTGTGATTTGATGGGTGAGCTGGTGTTTAGCCTCTGCAGTCCTCCCCTAAATGCCCAGGGCATTGCTTCAAGGCTTAAAGCTGGGGTAAACGGTGCAAGCTCATTGCTACACATCTATTACTCTCTTGGCAGTTTGGTACTTATCAAGATGGCAAAAGCGTCGGCTGTTTGGAGCGAACAATTAGTACAAATATTTTTTGACTTGCGTATGAAGGAGGTGGACAATAATAACCGTCCAAACACTCATCTTAGTAAAGAGGGATATGAGAATGTGATACGTAATTTTGAAAAAGAAACGGGTAAACTATACACCAAAAAACAAATGAAAAACAAGTGGGATAACCTTAAAGAGCAGTGGAAACTATGGAAAGACTTGAAGGGTAAACAGACCGGTCTTGGTTGGGATCACAGGCTCCAGACTATAGATGCATCCGAAGATTGGTGGCGTGAGAAAATCAAGGAGAACAATGAGTATGCTAAGTTACAGAAAAAAGGAATTACACCTGAGTTTGAAGACAAGTTGGATAAGTTATTTTCAGGAGTTGTAGCCACCGGTAGGTATGCTTGTACACCAGGTTCTTCACTACCTCAACCAACAAGTCCGGTTCACTGTGACAATGAACAAGACCTTGAAGAAAGTGGTGATTCATACGATATTCAGCCTACATCTACCCAAGGTATAAGAAAAAGAAGTGAGAGAATTGAAAAAGGTAAGGGAGTGGCTGCAAAAAAGGGGAAGGTGGGAGGTGCTGCTCTTCTGGCTACCAAAATTGATAGAATGTGTGAGGCAATTGAGAGCAGAAGTACCGCAACTTCAATTGCTAAGGGAGGCACTAGCATCAAAGATGTGATGAAGGATGTTACTTCGTTGCCGGGTGGCGAGCCTTGTTCTCCATTGTGGTTCTTTGCCACGGATTTGTTTGTGTGCCAAGAGAAAAGAGAGATGTTTAGCACTATGGAAGATACTAACACGAGGTTGGCGTGGCTGCAATATGAGATGAGCAAATTAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

467

Amino Acids

52.05

Weight (kDa)

9.3

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 185 - 278 3.6e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 138
AciI CCGC 1 cut(s) 1191
AclWI GGATC 1 cut(s) 795
AcuI CTGAAG 2 cut(s) 98, 237
AfaI GTAC 4 cut(s) 522, 570, 952, 1189
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 3 cut(s) 229, 822, 939
AgeI ACCGGT 2 cut(s) 773, 935
AgsI TTSAA 7 cut(s) 453, 671, 760, 896, 1016, 1088, 1200
AjnI CCWGG 2 cut(s) 438, 955
AluBI AGCT 8 cut(s) 55, 147, 176, 262, 368, 403, 464, 483
AluI AGCT 8 cut(s) 55, 147, 176, 262, 368, 403, 464, 483
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 1 cut(s) 795
Aor51HI AGCGCT 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 335, 1106, 1133, 1369
AsiGI ACCGGT 2 cut(s) 773, 935
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 3 cut(s) 84, 103, 246
AsuC2I CCSGG 2 cut(s) 342, 1257
AsuHPI GGTGA 3 cut(s) 212, 410, 1037
BarI GAAGNNNNNNTAC 2 cut(s) 1180, 1212
BauI CACGAG 1 cut(s) 1354
BbsI GAAGAC 1 cut(s) 903
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 143
BbvI GCAGC 4 cut(s) 322, 1093, 1120, 1356
BccI CCATC 2 cut(s) 388, 526
BceAI ACGGC 2 cut(s) 118, 303
BcgI CGANNNNNNTGC 4 cut(s) 279, 313, 525, 559
BciT130I CCWGG 2 cut(s) 440, 957
BcnI CCSGG 2 cut(s) 342, 1257
BfaI CTAG 2 cut(s) 369, 1218
BfmI CTRYAG 2 cut(s) 418, 804
BfoI RGCGCY 2 cut(s) 85, 104
BfuAI ACCTGC 1 cut(s) 138
BisI GCNGC 4 cut(s) 336, 1107, 1134, 1370
BlsI GCNGC 4 cut(s) 337, 1108, 1135, 1371
Bme1390I CCNGG 4 cut(s) 342, 440, 957, 1257
BmiI GGNNCC 1 cut(s) 797
BmrFI CCNGG 4 cut(s) 342, 440, 957, 1257
BmsI GCATC 3 cut(s) 799, 821, 1230
BoxI GACNNNNGTC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 903
BpmI CTGGAG 1 cut(s) 782
Bpu10I CCTNAGC 3 cut(s) 143, 172, 1206
BpuMI CCSGG 2 cut(s) 342, 1257
BsaAI YACGTR 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 438, 439, 1057, 1293
BsaWI WCCGGW 3 cut(s) 773, 935, 985
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 822, 939
Bse118I RCCGGY 2 cut(s) 773, 935
Bse3DI GCAATG 2 cut(s) 444, 485
BseBI CCWGG 2 cut(s) 440, 957
BseDI CCNNGG 4 cut(s) 438, 439, 1057, 1293
BseGI GGATG 2 cut(s) 812, 1246
BseLI CCNNNNNNNGG 3 cut(s) 229, 822, 939
BseMI GCAATG 2 cut(s) 444, 485
BseMII CTCAG 2 cut(s) 157, 879
BseXI GCAGC 4 cut(s) 322, 1093, 1120, 1356
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 1 cut(s) 287
BshTI ACCGGT 2 cut(s) 773, 935
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 5 cut(s) 341, 774, 936, 986, 1256
BslI CCNNNNNNNGG 3 cut(s) 229, 822, 939
Bsp1286I GDGCHC 1 cut(s) 279
Bsp1407I TGTACA 1 cut(s) 950
Bsp143I GATC 2 cut(s) 270, 787
BspACI CCGC 1 cut(s) 1191
BspCNI CTCAG 2 cut(s) 156, 880
BspLI GGNNCC 1 cut(s) 797
BspMAI CTGCAG 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 795
BspQI GCTCTTC 1 cut(s) 1143
BsrDI GCAATG 2 cut(s) 444, 485
BsrFI RCCGGY 2 cut(s) 773, 935
BsrGI TGTACA 1 cut(s) 950
BssAI RCCGGY 2 cut(s) 773, 935
BssECI CCNNGG 4 cut(s) 438, 439, 1057, 1293
BssMI GATC 2 cut(s) 270, 787
BssSI CACGAG 1 cut(s) 1354
BssT1I CCWWGG 1 cut(s) 1057
Bst2BI CACGAG 1 cut(s) 1354
Bst2UI CCWGG 2 cut(s) 440, 957
Bst4CI ACNGT 4 cut(s) 97, 476, 617, 995
Bst6I CTCTTC 4 cut(s) 156, 169, 198, 1143
BstAUI TGTACA 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 53, 279, 481, 1265
BstDEI CTNAG 6 cut(s) 143, 172, 632, 861, 888, 1206
BstDSI CCRYGG 1 cut(s) 1293
BstF5I GGATG 2 cut(s) 812, 1246
BstH2I RGCGCY 2 cut(s) 85, 104
BstHHI GCGC 3 cut(s) 84, 103, 246
BstKTI GATC 2 cut(s) 273, 790
BstMBI GATC 2 cut(s) 270, 787
BstMWI GCNNNNNNNGC 7 cut(s) 81, 90, 121, 130, 274, 287, 1142
BstNI CCWGG 2 cut(s) 440, 957
BstPAI GACNNNNGTC 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 340, 438, 955, 1255
BstSFI CTRYAG 2 cut(s) 418, 804
BstSNI TACGTA 1 cut(s) 662
BstV1I GCAGC 4 cut(s) 322, 1093, 1120, 1356
BstV2I GAAGAC 1 cut(s) 903
BtgI CCRYGG 1 cut(s) 1293
BtsCI GGATG 2 cut(s) 812, 1246
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 3 cut(s) 93, 743, 991
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 4 cut(s) 53, 279, 481, 1265
CfoI GCGC 3 cut(s) 84, 103, 246
Cfr10I RCCGGY 2 cut(s) 773, 935
CseI GACGC 1 cut(s) 531
CsiI ACCWGGT 1 cut(s) 955
Csp6I GTAC 4 cut(s) 521, 569, 951, 1188
CspAI ACCGGT 2 cut(s) 773, 935
CviQI GTAC 4 cut(s) 521, 569, 951, 1188
DdeI CTNAG 6 cut(s) 143, 172, 632, 861, 888, 1206
DpnI GATC 2 cut(s) 272, 789
DpnII GATC 2 cut(s) 270, 787
Eam1104I CTCTTC 4 cut(s) 156, 169, 198, 1143
EarI CTCTTC 4 cut(s) 156, 169, 198, 1143
Eco105I TACGTA 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 1057
Eco47III AGCGCT 1 cut(s) 83
Eco57I CTGAAG 2 cut(s) 98, 237
EcoRII CCWGG 2 cut(s) 438, 955
EcoT14I CCWWGG 1 cut(s) 1057
EcoT22I ATGCAT 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 1057
Fnu4HI GCNGC 4 cut(s) 336, 1107, 1134, 1370
FokI GGATG 2 cut(s) 799, 1253
Fsp4HI GCNGC 4 cut(s) 336, 1107, 1134, 1370
FspBI CTAG 2 cut(s) 369, 1218
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 3 cut(s) 83, 102, 245
GluI GCNGC 4 cut(s) 336, 1107, 1134, 1370
GsaI CCCAGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 782
HaeII RGCGCY 2 cut(s) 85, 104
HapII CCGG 5 cut(s) 341, 774, 936, 986, 1256
HgaI GACGC 1 cut(s) 531
HhaI GCGC 3 cut(s) 84, 103, 246
Hin6I GCGC 3 cut(s) 82, 101, 244
HinP1I GCGC 3 cut(s) 82, 101, 244
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 1 cut(s) 1028
HpaII CCGG 5 cut(s) 341, 774, 936, 986, 1256
HphI GGTGA 3 cut(s) 212, 410, 1037
Hpy166II GTNNAC 6 cut(s) 472, 604, 686, 767, 953, 991
Hpy188I TCNGA 3 cut(s) 70, 306, 817
Hpy188III TCNNGA 4 cut(s) 230, 529, 799, 921
Hpy8I GTNNAC 6 cut(s) 472, 604, 686, 767, 953, 991
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 7 cut(s) 127, 217, 261, 589, 754, 1114, 1231
HpyCH4III ACNGT 4 cut(s) 97, 476, 617, 995
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 6 cut(s) 268, 420, 479, 812, 1109, 1372
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 90, 121, 130, 274, 287, 1142
HpyF3I CTNAG 6 cut(s) 143, 172, 632, 861, 888, 1206
HpySE526I ACGT 1 cut(s) 661
HspAI GCGC 3 cut(s) 82, 101, 244
Kzo9I GATC 2 cut(s) 270, 787
LguI GCTCTTC 1 cut(s) 1143
LmnI GCTCC 3 cut(s) 343, 555, 801
Lsp1109I GCAGC 4 cut(s) 322, 1093, 1120, 1356
LweI GCATC 3 cut(s) 799, 821, 1230
MabI ACCWGGT 1 cut(s) 955
MaeI CTAG 2 cut(s) 369, 1218
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 3 cut(s) 864, 995, 1243
MalI GATC 2 cut(s) 272, 789
MboI GATC 2 cut(s) 270, 787
MboII GAAGA 9 cut(s) 143, 156, 185, 830, 908, 954, 1028, 1130, 1355
MfeI CAATTG 2 cut(s) 1173, 1200
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 8 cut(s) 563, 664, 879, 1083, 1152, 1173, 1200, 1388
MmeI TCCRAC 1 cut(s) 885
Mph1103I ATGCAT 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 6 cut(s) 18, 107, 126, 459, 729, 1391
MspI CCGG 5 cut(s) 341, 774, 936, 986, 1256
MspR9I CCNGG 4 cut(s) 342, 440, 957, 1257
MunI CAATTG 2 cut(s) 1173, 1200
MvaI CCWGG 2 cut(s) 440, 957
MwoI GCNNNNNNNGC 7 cut(s) 81, 90, 121, 130, 274, 287, 1142
NciI CCSGG 2 cut(s) 342, 1257
NdeII GATC 2 cut(s) 270, 787
NlaIV GGNNCC 1 cut(s) 797
NmuCI GTSAC 1 cut(s) 995
NsbI TGCGCA 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 814
PasI CCCWGGG 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 1143
PcsI WCGNNNNNNNCGW 1 cut(s) 1361
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 1028
PinAI ACCGGT 2 cut(s) 773, 935
PkrI GCNGC 4 cut(s) 337, 1108, 1135, 1371
Ppu21I YACGTR 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 438, 955
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 2 cut(s) 438, 955
PspN4I GGNNCC 1 cut(s) 797
PsrI GAACNNNNNNTAC 4 cut(s) 552, 584, 943, 975
PstI CTGCAG 1 cut(s) 422
RsaI GTAC 4 cut(s) 522, 570, 952, 1189
RsaNI GTAC 4 cut(s) 521, 569, 951, 1188
SapI GCTCTTC 1 cut(s) 1143
SaqAI TTAA 6 cut(s) 18, 107, 126, 459, 729, 1391
SatI GCNGC 4 cut(s) 336, 1107, 1134, 1370
Sau3AI GATC 2 cut(s) 270, 787
ScrFI CCNGG 4 cut(s) 342, 440, 957, 1257
SduI GDGCHC 1 cut(s) 279
SexAI ACCWGGT 1 cut(s) 955
SfaNI GCATC 3 cut(s) 799, 821, 1230
SfcI CTRYAG 2 cut(s) 418, 804
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 8 cut(s) 563, 664, 879, 1083, 1152, 1173, 1200, 1388
SsiI CCGC 1 cut(s) 1191
SspI AATATT 1 cut(s) 576
SspMI CTAG 2 cut(s) 369, 1218
StyD4I CCNGG 4 cut(s) 340, 438, 955, 1255
StyI CCWWGG 1 cut(s) 1057
TaaI ACNGT 4 cut(s) 97, 476, 617, 995
TaiI ACGT 1 cut(s) 664
TaqI TCGA 1 cut(s) 273
TasI AATT 8 cut(s) 563, 664, 879, 1083, 1152, 1173, 1200, 1388
TatI WGTACW 2 cut(s) 568, 950
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 6 cut(s) 18, 107, 126, 459, 729, 1391
Tru9I TTAA 6 cut(s) 18, 107, 126, 459, 729, 1391
TscAI CASTG 3 cut(s) 100, 743, 998
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 4 cut(s) 335, 1106, 1133, 1369
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 5 cut(s) 608, 722, 1017, 1020, 1250
TspGWI ACGGA 1 cut(s) 1310
TspRI CASTG 3 cut(s) 100, 743, 998
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 369, 1218
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.