Rorug05G0191400
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007671
Physical Location & Seq
Reverse (-)
18616322 .. 18618600
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0191400.1

Sequence Viewer

Length: 1074 bp
ATGAAGCTAAGCCTCACTCCAAAACTCTCAACCTTCCTTAAACCCTCCCTTGCTTCTACTCCTCTCCGTCGCTCTATTTGCTCTTCTTCACCATCACCACCACCACCCATTTCTCTAAAACCCCAAACCCCTCTCTTTCTGAGACCACCCATTCACTCAGCCACCTCCTCAGACCTCCAGCAATGGCAGGACTGGGCCAAAACCCTCGCTTCCTCAGTTGGGTCCACCTTCGCCGACTCAGACAACGGCCCGGACTCGACCCTTTTGCTCAGAGAGCTCAACTGGCTCGTAGACGACGCAGTTCAACAAGGAATCGAAAATGGTCAAATAAAAATTAGATTGAGACTGAGTCTGGAGGAGCTGTACTTGTTGTGGAAGCAGAGGATTGAAAAGAGGAGGCCTTTTCAGTACATTGTTGGGTGTGAGCATTGGAGAGAGTTGGTGCTGTGTGTTCAAGAAGGGGTTTTGATTCCGAGGCCGGAGACTGAGCTCATTGTGGATTTGGTGGGTGATGTGGTGAAGGGTGAGGAGGGTTTAAGAGAGGGTTTGTGGGCAGATTTGGGGACTGGGAGTGGGGCTATTGCTATTGGGATTGCGAGGGTTTTGGGGACTGGTGGTGGCAGAGTCATTGCAACTGATTTGAGTCCCACTGCGATTTCGGTTGCGGGGTTTAATGTGGAGAGGTATGGTTTACAGGATGTAGTGGAGCTAAGGCAAGGATCTTGGTTTGACCCATTAAAGGATGTGGAAGGTAAACTTGCGGGGTTCGTAAGTAATCCACCATACATACCAAGTGACAATATCTCCGGGCTACAAGCTGAAGTTGGAAGACATGAACCCAGAGTTGCACTGGATGGCGGTGTTGATGGCATGGATGATCTCTTACATCTTTGCAAAGGGGCTGCTTCCATTTTGAAACCTGGTGGATTTTTTGCTTTTGAGACAAATGGTGAGAAGCAGTGCAAGTATCTTGTGGAGTACATGGAAAATGAGGCTAGAGGCAGCTTTTGTAATTTGAGTATAATTCCTGATTTTGCGGGAATTCATAGATTTGTTACCGGATTCCGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042538 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EHD_N

Protein Analysis

357

Amino Acids

39.08

Weight (kDa)

5.54

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 186 - 247 6.2e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AciI CCGC 4 cut(s) 665, 761, 858, 1037
AclWI GGATC 1 cut(s) 727
AcsI RAATTY 1 cut(s) 1041
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 3 cut(s) 365, 410, 980
AfiI CCNNNNNNNGG 2 cut(s) 219, 739
AgsI TTSAA 4 cut(s) 305, 389, 455, 916
AjnI CCWGG 1 cut(s) 919
AluBI AGCT 7 cut(s) 7, 277, 361, 490, 709, 818, 1005
AluI AGCT 7 cut(s) 7, 277, 361, 490, 709, 818, 1005
Alw21I GWGCWC 2 cut(s) 279, 492
Alw26I GTCTC 4 cut(s) 136, 337, 476, 935
AlwI GGATC 1 cut(s) 727
AoxI GGCC 4 cut(s) 195, 247, 398, 476
ApeKI GCWGC 2 cut(s) 902, 1002
ApoI RAATTY 1 cut(s) 1041
AspS9I GGNCC 3 cut(s) 195, 222, 248
AsuC2I CCSGG 2 cut(s) 251, 808
AsuHPI GGTGA 6 cut(s) 81, 87, 521, 529, 536, 962
AvaII GGWCC 1 cut(s) 222
BanII GRGCYC 2 cut(s) 279, 492
BbsI GAAGAC 1 cut(s) 835
Bbv12I GWGCWC 2 cut(s) 279, 492
BbvI GCAGC 2 cut(s) 889, 1014
BccI CCATC 3 cut(s) 100, 848, 860
BceAI ACGGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BciT130I CCWGG 1 cut(s) 921
BcnI CCSGG 2 cut(s) 251, 808
BcoDI GTCTC 4 cut(s) 136, 337, 476, 935
BfaI CTAG 1 cut(s) 996
BisI GCNGC 2 cut(s) 903, 1003
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 2 cut(s) 904, 1004
Bme1390I CCNGG 3 cut(s) 251, 808, 921
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 3 cut(s) 195, 222, 248
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 3 cut(s) 251, 808, 921
BmrI ACTGGG 2 cut(s) 202, 576
BmuI ACTGGG 2 cut(s) 202, 576
BpiI GAAGAC 1 cut(s) 835
BpmI CTGGAG 2 cut(s) 161, 374
Bpu10I CCTNAGC 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 251, 808
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 473
BsaWI WCCGGW 1 cut(s) 1058
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 739
Bse1I ACTGG 5 cut(s) 197, 287, 571, 616, 855
Bse3DI GCAATG 2 cut(s) 188, 627
BseBI CCWGG 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 4 cut(s) 703, 748, 859, 880
BseLI CCNNNNNNNGG 2 cut(s) 219, 739
BseMI GCAATG 2 cut(s) 188, 627
BseMII CTCAG 8 cut(s) 131, 171, 183, 228, 252, 283, 338, 477
BseNI ACTGG 5 cut(s) 197, 287, 571, 616, 855
BseRI GAGGAG 5 cut(s) 51, 157, 371, 409, 542
BseXI GCAGC 2 cut(s) 889, 1014
BshFI GGCC 4 cut(s) 197, 249, 400, 478
BsiHKAI GWGCWC 2 cut(s) 279, 492
BsiSI CCGG 4 cut(s) 251, 479, 807, 1059
BslFI GGGAC 3 cut(s) 577, 622, 630
BslI CCNNNNNNNGG 2 cut(s) 219, 739
BsmAI GTCTC 4 cut(s) 136, 337, 476, 935
BsmFI GGGAC 3 cut(s) 577, 622, 630
BsnI GGCC 4 cut(s) 197, 249, 400, 478
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 279, 492
Bsp143I GATC 2 cut(s) 719, 877
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 4 cut(s) 665, 761, 858, 1037
BspANI GGCC 4 cut(s) 197, 249, 400, 478
BspCNI CTCAG 8 cut(s) 132, 170, 182, 227, 251, 282, 339, 478
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 1 cut(s) 727
BspQI GCTCTTC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 136
BsrDI GCAATG 2 cut(s) 188, 627
BsrI ACTGG 5 cut(s) 197, 287, 571, 616, 855
BssECI CCNNGG 1 cut(s) 473
BssMI GATC 2 cut(s) 719, 877
Bst2UI CCWGG 1 cut(s) 921
Bst6I CTCTTC 1 cut(s) 88
BstF5I GGATG 4 cut(s) 703, 748, 859, 880
BstKTI GATC 2 cut(s) 722, 880
BstMAI GTCTC 4 cut(s) 136, 337, 476, 935
BstMBI GATC 2 cut(s) 719, 877
BstMWI GCNNNNNNNGC 3 cut(s) 78, 274, 283
BstNI CCWGG 1 cut(s) 921
BstSCI CCNGG 3 cut(s) 249, 806, 919
BstV1I GCAGC 2 cut(s) 889, 1014
BstV2I GAAGAC 1 cut(s) 835
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
BsuRI GGCC 4 cut(s) 197, 249, 400, 478
BtsCI GGATG 4 cut(s) 703, 748, 859, 880
BtsI GCAGTG 2 cut(s) 648, 965
BtsIMutI CAGTG 3 cut(s) 648, 848, 965
Cfr13I GGNCC 3 cut(s) 195, 222, 248
CseI GACGC 1 cut(s) 305
CsiI ACCWGGT 1 cut(s) 919
Csp6I GTAC 3 cut(s) 364, 409, 979
CviAII CATG 3 cut(s) 833, 871, 982
CviQI GTAC 3 cut(s) 364, 409, 979
DpnI GATC 2 cut(s) 721, 879
DpnII GATC 2 cut(s) 719, 877
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 2 cut(s) 277, 490
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 2 cut(s) 279, 492
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 2 cut(s) 277, 490
Eco57I CTGAAG 1 cut(s) 840
EcoICRI GAGCTC 2 cut(s) 277, 490
EcoRI GAATTC 1 cut(s) 1041
EcoRII CCWGG 1 cut(s) 919
EcoT38I GRGCYC 2 cut(s) 279, 492
FaeI CATG 3 cut(s) 836, 874, 985
FaiI YATR 8 cut(s) 687, 784, 788, 834, 872, 983, 1022, 1047
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 3 cut(s) 577, 622, 630
FatI CATG 3 cut(s) 832, 870, 981
FauI CCCGC 3 cut(s) 658, 754, 1030
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 903, 1003
FokI GGATG 4 cut(s) 710, 755, 866, 887
FriOI GRGCYC 2 cut(s) 279, 492
Fsp4HI GCNGC 2 cut(s) 903, 1003
FspBI CTAG 1 cut(s) 996
GluI GCNGC 2 cut(s) 903, 1003
GsuI CTGGAG 2 cut(s) 161, 374
HaeIII GGCC 4 cut(s) 197, 249, 400, 478
HapII CCGG 4 cut(s) 251, 479, 807, 1059
HgaI GACGC 1 cut(s) 305
Hin1II CATG 3 cut(s) 836, 874, 985
HinfI GANTC 8 cut(s) 236, 254, 312, 349, 469, 624, 643, 1062
HpaII CCGG 4 cut(s) 251, 479, 807, 1059
HphI GGTGA 6 cut(s) 81, 87, 521, 529, 536, 962
Hpy166II GTNNAC 4 cut(s) 225, 292, 692, 755
Hpy188I TCNGA 5 cut(s) 141, 172, 241, 272, 474
Hpy188III TCNNGA 3 cut(s) 353, 455, 1028
Hpy8I GTNNAC 4 cut(s) 225, 292, 692, 755
Hpy99I CGWCG 2 cut(s) 72, 299
HpyAV CCTTC 5 cut(s) 43, 238, 452, 514, 743
HpyCH4V TGCA 4 cut(s) 632, 848, 894, 963
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 274, 283
Hsp92II CATG 3 cut(s) 836, 874, 985
Kzo9I GATC 2 cut(s) 719, 877
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 358, 706
Lsp1109I GCAGC 2 cut(s) 889, 1014
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 1 cut(s) 996
MaeIII GTNAC 2 cut(s) 794, 1054
MalI GATC 2 cut(s) 721, 879
MboI GATC 2 cut(s) 719, 877
MboII GAAGA 3 cut(s) 75, 78, 840
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 2 cut(s) 279, 492
MluCI AATT 4 cut(s) 333, 1012, 1023, 1041
MlyI GAGTC 5 cut(s) 230, 248, 358, 633, 652
MmeI TCCRAC 1 cut(s) 805
MseI TTAA 4 cut(s) 39, 536, 672, 737
MspI CCGG 4 cut(s) 251, 479, 807, 1059
MspR9I CCNGG 3 cut(s) 251, 808, 921
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 3 cut(s) 78, 274, 283
NciI CCSGG 2 cut(s) 251, 808
NdeII GATC 2 cut(s) 719, 877
NlaIII CATG 3 cut(s) 836, 874, 985
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 794
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 88
PfeI GAWTC 3 cut(s) 312, 469, 1062
PflFI GACNNNGTC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 904, 1004
PleI GAGTC 5 cut(s) 230, 248, 357, 632, 651
PpsI GAGTC 5 cut(s) 230, 248, 357, 632, 651
Psp124BI GAGCTC 2 cut(s) 279, 492
Psp6I CCWGG 1 cut(s) 919
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 3 cut(s) 195, 222, 248
PsuI RGATCY 1 cut(s) 719
PsyI GACNNNGTC 1 cut(s) 348
RsaI GTAC 3 cut(s) 365, 410, 980
RsaNI GTAC 3 cut(s) 364, 409, 979
SacI GAGCTC 2 cut(s) 279, 492
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 4 cut(s) 39, 536, 672, 737
SatI GCNGC 2 cut(s) 903, 1003
Sau3AI GATC 2 cut(s) 719, 877
Sau96I GGNCC 3 cut(s) 195, 222, 248
SchI GAGTC 5 cut(s) 230, 248, 358, 633, 652
ScrFI CCNGG 3 cut(s) 251, 808, 921
SduI GDGCHC 2 cut(s) 279, 492
SexAI ACCWGGT 1 cut(s) 919
SinI GGWCC 1 cut(s) 222
Sse9I AATT 4 cut(s) 333, 1012, 1023, 1041
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 4 cut(s) 665, 761, 858, 1037
SspMI CTAG 1 cut(s) 996
SstI GAGCTC 2 cut(s) 279, 492
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 3 cut(s) 249, 806, 919
TaqI TCGA 2 cut(s) 257, 315
TasI AATT 4 cut(s) 333, 1012, 1023, 1041
TatI WGTACW 3 cut(s) 363, 408, 978
TfiI GAWTC 3 cut(s) 312, 469, 1062
Tru1I TTAA 4 cut(s) 39, 536, 672, 737
Tru9I TTAA 4 cut(s) 39, 536, 672, 737
TscAI CASTG 3 cut(s) 655, 855, 965
TseFI GTSAC 1 cut(s) 794
TseI GCWGC 2 cut(s) 902, 1002
Tsp45I GTSAC 1 cut(s) 794
TspDTI ATGAA 3 cut(s) 17, 849, 1034
TspGWI ACGGA 2 cut(s) 56, 1055
TspRI CASTG 3 cut(s) 655, 855, 965
Tth111I GACNNNGTC 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 1 cut(s) 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.