Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010666

Physical Location & Seq

Genomic Coordinates Forward (+)

37589061 .. 37589504

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0316300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAGAGCAACTGGGAGTAGTGCTAACATGCTTTGCAGGAGCAGTACCCGATGGACTCCCACTACATATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTACAGAGCAGGTTCAGAGGATCACTCTCCAGCTGAAACGGTACGGCAAGATCGAGGGTAAGAACGTCTTTTATTGGTTCCAGAACCACAAGGCTCGGGAGAAACAGAAGAAGAGGTCCACTTCGGATGTTCCTGTGCCCATGCAAAGATCAAGGCTTGTTGGTAGATTCATTAATCTTAATTTTGGATCAACTAGCTCTACTGGTGTTGATGGATCCATTAATCTCAATTTTGGATCAACTAGTTCTACTGTCATGGAACAGCGAGGAGAAGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009877 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031965 GO:0031967 GO:0031975 GO:0034220 GO:0036377 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

147

Amino Acids

16.7

Weight (kDa)

10.13

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 90	9.7e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28260 AT2G28260
fragaria_vesca	FvH4_3g31830 FvH4_3g31830 FvH4_3g31830
malus_domestica	MD03G1120600.v1.1 MD11G1139100.v1.1
prunus_persica	Prupe.6G104000_v2.0.a1 Prupe.6G104000_v2.0.a1
pyrus_communis	pycom11g11500
rosa_chinensis	RchiOBHm_Chr5g0058601
rosa_laevigata	RLG00000035235
rosa_multiflora	Rmu_sc0000367.1_g000155
rosa_roxburghii	Rroxscaffold_1G00021860
rosa_rugosa	Rorug05G0316200 Rorug05G0316300 Rorug05G0316400
rosa_samantha	Rh5AG382400 Rh5BG394200
rosa_wichuraiana	Rw5G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AclWI	GGATC	5 cut(s)	191, 358, 372, 385, 406
AfaI	GTAC	2 cut(s)	88, 206
AhlI	ACTAGT	1 cut(s)	404
AluBI	AGCT	3 cut(s)	133, 196, 360
AluI	AGCT	3 cut(s)	133, 196, 360
AlwI	GGATC	5 cut(s)	191, 358, 372, 385, 406
Ama87I	CYCGRG	1 cut(s)	258
AseI	ATTAAT	2 cut(s)	336, 384
AspS9I	GGNCC	2 cut(s)	156, 279
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	156, 279
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	377
BccI	CCATC	3 cut(s)	26, 87, 368
BceAI	ACGGC	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	357, 405, 442
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	156, 279
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	156, 279
BmiI	GGNNCC	4 cut(s)	6, 158, 242, 379
BmrI	ACTGGG	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	58, 370
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 295
BseNI	ACTGG	2 cut(s)	58, 370
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
BspLI	GGNNCC	4 cut(s)	6, 158, 242, 379
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	5 cut(s)	191, 358, 372, 385, 406
BsrI	ACTGG	2 cut(s)	58, 370
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
Bst4CI	ACNGT	2 cut(s)	204, 415
Bst6I	CTCTTC	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	37, 295
BstKTI	GATC	7 cut(s)	186, 216, 314, 353, 380, 401, 439
BstMBI	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
BstNSI	RCATGY	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	37, 295
BveI	ACCTGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	156, 279
Csp6I	GTAC	2 cut(s)	87, 205
CviAII	CATG	3 cut(s)	70, 304, 418
CviJI	RGCY	5 cut(s)	133, 196, 257, 319, 360
CviKI_1	RGCY	5 cut(s)	133, 196, 257, 319, 360
CviQI	GTAC	2 cut(s)	87, 205
DpnI	GATC	7 cut(s)	185, 215, 313, 352, 379, 400, 438
DpnII	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	156, 279
Eco88I	CYCGRG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	156
FaeI	CATG	3 cut(s)	73, 307, 421
FaiI	YATR	6 cut(s)	71, 109, 114, 116, 305, 419
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	69, 303, 417
FokI	GGATG	2 cut(s)	44, 302
FspBI	CTAG	3 cut(s)	357, 405, 442
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	73, 307, 421
HinfI	GANTC	3 cut(s)	97, 120, 330
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	180, 289
Hpy188III	TCNNGA	2 cut(s)	244, 260
Hpy8I	GTNNAC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	204, 415
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	78, 307
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	73, 307, 421
Kzo9I	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	8 cut(s)	29, 39, 64, 158, 206, 257, 309, 351
MaeI	CTAG	3 cut(s)	357, 405, 442
MaeII	ACGT	1 cut(s)	228
MalI	GATC	7 cut(s)	185, 215, 313, 352, 379, 400, 438
MboI	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
MboII	GAAGA	2 cut(s)	283, 286
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	343, 391
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	7 cut(s)	22, 29, 134, 174, 211, 270, 422
MseI	TTAA	3 cut(s)	336, 342, 384
MspA1I	CMGCKG	1 cut(s)	196
NdeII	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
NlaIII	CATG	3 cut(s)	73, 307, 421
NlaIV	GGNNCC	4 cut(s)	6, 158, 242, 379
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	120, 330
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	156
PshBI	ATTAAT	2 cut(s)	336, 384
Psp5II	RGGWCCY	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	6, 158, 242, 379
PspPI	GGNCC	2 cut(s)	156, 279
PspPPI	RGGWCCY	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	88, 206
RsaNI	GTAC	2 cut(s)	87, 205
SaqAI	TTAA	3 cut(s)	336, 342, 384
Sau3AI	GATC	7 cut(s)	183, 213, 311, 350, 377, 398, 436
Sau96I	GGNCC	2 cut(s)	156, 279
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	135, 158, 177, 198, 231, 281, 362
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	156, 279
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	2 cut(s)	343, 391
SspMI	CTAG	3 cut(s)	357, 405, 442
TaaI	ACNGT	2 cut(s)	204, 415
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	216
TasI	AATT	2 cut(s)	343, 391
TfiI	GAWTC	2 cut(s)	120, 330
Tru1I	TTAA	3 cut(s)	336, 342, 384
Tru9I	TTAA	3 cut(s)	336, 342, 384
TspDTI	ATGAA	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	156, 279
VspI	ATTAAT	2 cut(s)	336, 384
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	3 cut(s)	357, 405, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.