Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010666

Physical Location & Seq

Genomic Coordinates Reverse (-)

37595069 .. 37598320

Gene Structure 3252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGGCTCTGGAAATTGTGGGTGGTGCTTTTCTCTCTTCTGCTCTTGGTGTTCTGTTTGATAGGATGGCTTCCCGTCCGGTTGTTGACTTCATCCGAGGAAAGAAGATCACCGCTGGGCTGCTCCATAAGTTGAAGATTAAGTTGTTGTTGGTTAATAAATTTCTCGATGATGCAGAGGAGAAGCAACTCAGAAACGATAGAGTCAGGGAATGGCTTGATGAGCTTAAAGATGTTCTCTATCATGCAGACGACCTGTTGGATGAGATAAAGACTGAAGCTCTGCGTTGCAAGATGGAACAAGAAGATTCTGGAAGCAGCAGCACAAATCAGGTACTCAAGTTTAGTTCTATTTCCATTCAAGAACTTGACAAAAGTCTGGAACCCAGGATACTGGACGTTCTTGACAGATTAGAACTTATTGTCAACGAAAAAGATGTGCTTGATTTGAAAGAGGGTGTTCAGGATAGACCACAAGCAAGACTGCCTACAACTTCTTTGGTAGAAGAGTCTAGTGTATATGGAAGGGATGAAGAAAAGGAGGCCATTATCAAGTTATTGTTAGCGGATGGTATGACTGGAAATAAGAAAGATGTGCTTCCAATTGTGGGCATGGGTGGGGTTGGAAAGACCACCCTTGCTCAACTCGTATACAACGATGACAGAGTCAAGCAACATTTTGACCATCAATCATGGTCCTGTGTTTCAGAAGAATTTGATGTTATCAAAATAACACAGACAATTTATGGGGCAGTCACTTCACAAACTTGTAATATCACAGATTTAGACATGCTTCAAGTTAAACTAAAGCAGACGTTGTCAGGGAAGAAATTTCTCTTTGTTCTTGATGATGTTTGGAATGTGAATTTAATGAAGTGGGATCTCTTGAGCCGACCCTTTGAGAGTGGAGGTCATGGAAGTAAGATCATTGTCACAACACGTGATGAAGGCGCCGCATGCAGGATGGGTACCGTTCCAAGTAAACATCTAGTGCAACTATCTGAGGAAAACTGCTGGTTGTTGTTCTCAAAACATGCCTTCAAAAATGCAGGTGTTACTGCAGATCCTTCGCATGAAGTGATTGGAAAACAGATTGCTCAAAAGTGTAAAGGACTCCCTTTAGCTGCAAAATCACTTGGGGGTCTTTTATGTTCTGAACCAAATATTGAGAAATGGGAAGAAATATTGAACAACGACATATGGGAGTTGCGAGATAAAGAGAACGACATTTTGCCAGCTCTATGGTTGAGCTACCATTATCTACCTCCACATCTGAAGCGTTGTTTTGCTTACTGTTCCATATTTCCTCAAGATCATAAGTTTAACAAACCAGATCTGGTTTTATTGTGGATGGCTGAAGATCTCTTATCGTCAAAATCGAAGACTACAATTGAAGAAGTTGGAGATAACTACTTTGATGATCTAGTGTCAAGGTCATTTTTCCAACGTGTACCAGATCATTTTTCTGGTAAGCCAATTTTCACAATGCATGACCTTATCCATGACTTAGCAAACTTTGTCTCCGGAGAGTTTTGTGTTAGGTTGGAGGACAATGACCCAGTACTGGAAAATGCCGGCAACAGTCGCCACTTTTCATGTGTAACCGGCAGTTTTGATCAATGGGACAGTTTGTATGAAGCCAAGTATTTGAGGACCTTTCTAGTGGTATCAGATTACATAAACCGTCCCAACTTAGATTTTGATATATTCCTGAAGCTTCAGTGTTTAAGAATGCTCAATTTGTCAGGGTACAGGATTGGTGAGCTGCCTAGTTCAATTAGCAAGTTGAAGCATCTAAGGCACTTGGACTTGTCTGACACATCAATTAAGAAGTTACCTGATGAAATGTGTACTTTATATAATTTACAGACGTTATTGTTGTCGTATTGTTGTTCTCTAGTTGAGTTGCCAACTGATTTTGGAAGATTAATCAACCTGCGTCATCTTGATATCAGATACACACAGATAGAAAAGATGCCACCAAGGATGGGCAAAATGAAAGATCTCCAAACATTAAGAGGTAAGTTTGTCCTAGACAAATACACTGGTGATAACATTGTCGAGATTAAAGAGCTTCAGCAGTTGCGCGGAACACTTTGTATATCTGGGCTTCGCCATATTTTGCATGTCACGGATGCCTTGGAGACCAACATGAGAAAGAAGAAGCATCTGGATGAATTAGTTTTGGAATGGGGAGGCAAGTCTGGTGACACCGACGATACACAAAAAGAGAGAGATGTGCTGGAGAACCTCCAACCTCATACAAATCTAAAAGAACTCACCGTTCGATCTTACGGGGGCACAAGATTTCCAGGTTGGTTGGAAGATCATTCTAGTTTATCTAATCTGGTTCGTCTTCAACTTCTGGATTGTGGAAATTGTTGGTTGTTGGCATCAGTTGAGCAGCTACCCTCCCTACAAGAGCTTGAGATTGAAGGATTTAATGGAGTGGTGAATGTGGGTTCCAAGCCTTTTCCGAATCTTCGTAAGCTTAGTCTGAGGTCCTGTCCCAAGGTAACCCGGTCCTTCATTTTAGCCTGCTTCCCAAAGCTTGAAAGCCTCGAATTGAAGGATGTTAATGTAGAATCTCTTAGTTCCTCTACACTCCTCTCCCTTGTCAAACTTACAATAGCTTCATGCCCAAATTTTGTTTGTTTTCCCGATGGAGGGCTGAATGCGCCCAACTTGGAGACCATAGCAGTCCATACCTGTCTGAAACTGAGGTCATTGCCGCAACACATGCACAACCTTCTCCCATCTCTCAGGCGCTTGTTCGTATATTGTCCAGAATTGGAATCATTTCCCGAAGGGAGATTGCCGTCTAAGTTGGAATACCTGGGCATCTGGCGTTGCAAGAAACTCCTCATTGGAAACCCCCGTATGCAGTGGGGTCTACCAACACTCACCTCTCTCAAATTCTTGAGCGTCGGCTTTGAGGAATGTGAACAAGTTGTGGATTCATTTCCAGACGAGGGGCTGCTGCCCACCACTCTCTCACGACTCGAGATCTACTGTATTCCGAAGCTGGACGGCAAGGGGTTTAGGCAACTCACCTCTCTTAAAGAGATGGAAATTGGCAATTGCCCTGAACTCCGGTGCTTGCCAGATGAAGGGCTACCCACTTCTCTTTCTGATCTGAACATCTATGATTGCCCTTTACTAGAACAACGTTGCCAGAGAGAGACGGGGGAAGATTGGCCCAAGATTGCTCACATCAAGAGCATTCGAATCAATAAAAAAGAAATGCAACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005262 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006816 GO:0008150 GO:0008324 GO:0009877 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015079 GO:0015085 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031965 GO:0031967 GO:0031975 GO:0034220 GO:0036377 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044325 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071804 GO:0071805 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

1083

Amino Acids

123.13

Weight (kDa)

5.87

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	10 - 102	3.4e-18	Rx N-terminal domain
NB-ARC	PF00931	177 - 348	2.4e-36	NB-ARC domain
WHD_DRP	PF23559	433 - 503	3.7e-25	Disease resistance protein Winged helix domain
LRR_14	PF23598	571 - 865	6.5e-31	Leucine-rich repeat region
LRR_8	PF13855	575 - 629	6.3e-06	Leucine rich repeat
LRR_R13L1-DRL21	PF25019	685 - 812	1.6e-38	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28260 AT2G28260
fragaria_vesca	FvH4_3g31830 FvH4_3g31830 FvH4_3g31830
malus_domestica	MD03G1120600.v1.1 MD11G1139100.v1.1
prunus_persica	Prupe.6G104000_v2.0.a1 Prupe.6G104000_v2.0.a1
pyrus_communis	pycom11g11500
rosa_chinensis	RchiOBHm_Chr5g0058601
rosa_laevigata	RLG00000035235
rosa_multiflora	Rmu_sc0000367.1_g000155
rosa_roxburghii	Rroxscaffold_1G00021860
rosa_rugosa	Rorug05G0316200 Rorug05G0316300 Rorug05G0316400
rosa_samantha	Rh5AG382400 Rh5BG394200
rosa_wichuraiana	Rw5G036010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1037
Acc36I	ACCTGC	2 cut(s)	1037, 1941
Acc65I	GGTACC	1 cut(s)	965
AccB1I	GGYRCC	2 cut(s)	947, 965
AccI	GTMKAC	2 cut(s)	648, 2890
AccII	CGCG	1 cut(s)	2085
AccIII	TCCGGA	1 cut(s)	1520
AciI	CCGC	5 cut(s)	111, 563, 951, 2085, 2729
AclI	AACGTT	1 cut(s)	3166
AclWI	GGATC	2 cut(s)	885, 1055
AcsI	RAATTY	6 cut(s)	158, 710, 827, 862, 2641, 2912
AcuI	CTGAAG	6 cut(s)	294, 1292, 1374, 1700, 1730, 2057
AcvI	CACGTG	1 cut(s)	938
AcyI	GRCGYC	1 cut(s)	948
AfaI	GTAC	6 cut(s)	333, 967, 1449, 1560, 1748, 1849
AfiI	CCNNNNNNNGG	8 cut(s)	605, 957, 1561, 1985, 2663, 2664, 2969, 3107
AflIII	ACRYGT	2 cut(s)	935, 1444
AjnI	CCWGG	3 cut(s)	383, 2308, 2832
Alw26I	GTCTC	4 cut(s)	1522, 2135, 2681, 3173
AlwI	GGATC	2 cut(s)	885, 1055
Ama87I	CYCGRG	1 cut(s)	2999
Aor13HI	TCCGGA	1 cut(s)	1520
AoxI	GGCC	2 cut(s)	540, 3194
ApeKI	GCWGC	8 cut(s)	118, 315, 318, 1121, 1762, 2401, 2974, 2977
ApoI	RAATTY	6 cut(s)	158, 710, 827, 862, 2641, 2912
AseI	ATTAAT	1 cut(s)	1925
Asp700I	GAANNNNTTC	1 cut(s)	2796
Asp718I	GGTACC	1 cut(s)	965
AspLEI	GCGC	4 cut(s)	950, 2085, 2677, 2766
AspS9I	GGNCC	5 cut(s)	693, 1650, 2499, 2520, 3195
AsuC2I	CCSGG	1 cut(s)	2518
AsuHPI	GGTGA	8 cut(s)	100, 1769, 2057, 2216, 2269, 2461, 2893, 3040
AsuII	TTCGAA	1 cut(s)	3223
AvaI	CYCGRG	1 cut(s)	2999
AvaII	GGWCC	4 cut(s)	693, 1650, 2499, 2520
BaeGI	GKGCMC	1 cut(s)	2300
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
BanI	GGYRCC	2 cut(s)	947, 965
BbrPI	CACGTG	1 cut(s)	938
BbsI	GAAGAC	2 cut(s)	1385, 2345
BbvI	GCAGC	8 cut(s)	105, 327, 330, 1108, 1749, 2413, 2961, 2964
BceAI	ACGGC	2 cut(s)	2800, 3043
BcgI	CGANNNNNNTGC	2 cut(s)	1047, 1081
BciT130I	CCWGG	3 cut(s)	385, 2310, 2834
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	1612
BcnI	CCSGG	1 cut(s)	2518
BcoDI	GTCTC	4 cut(s)	1522, 2135, 2681, 3173
BfaI	CTAG	9 cut(s)	510, 986, 1421, 1658, 1767, 1895, 2030, 2331, 3158
BfmI	CTRYAG	1 cut(s)	1056
BfoI	RGCGCY	2 cut(s)	951, 2767
BfuAI	ACCTGC	2 cut(s)	1037, 1941
BfuI	GTATCC	1 cut(s)	381
BglII	AGATCT	4 cut(s)	1330, 1357, 1999, 3003
BmcAI	AGTACT	1 cut(s)	1560
Bme1390I	CCNGG	4 cut(s)	385, 2310, 2518, 2834
Bme18I	GGWCC	4 cut(s)	693, 1650, 2499, 2520
BmeT110I	CYCGRG	1 cut(s)	2999
BmgT120I	GGNCC	5 cut(s)	693, 1650, 2499, 2520, 3195
BmiI	GGNNCC	4 cut(s)	381, 949, 967, 2461
BmrFI	CCNGG	4 cut(s)	385, 2310, 2518, 2834
BmrI	ACTGGG	1 cut(s)	1550
BmsI	GCATC	7 cut(s)	160, 1798, 1962, 2122, 2173, 2399, 2847
BmuI	ACTGGG	1 cut(s)	1550
BoxI	GACNNNNGTC	1 cut(s)	372
BpiI	GAAGAC	2 cut(s)	1385, 2345
BpmI	CTGGAG	1 cut(s)	2261
Bpu14I	TTCGAA	1 cut(s)	3223
BpuEI	CTTGAG	5 cut(s)	320, 904, 1290, 2444, 2938
BpuMI	CCSGG	1 cut(s)	2518
BsaAI	YACGTR	1 cut(s)	938
BsaHI	GRCGYC	1 cut(s)	948
BsaI	GGTCTC	2 cut(s)	2135, 2681
BsaJI	CCNNGG	6 cut(s)	94, 383, 1979, 2136, 2508, 2833
BsaWI	WCCGGW	3 cut(s)	76, 1520, 3090
BsaXI	ACNNNNNCTCC	2 cut(s)	1502, 1532
Bsc4I	CCNNNNNNNGG	8 cut(s)	605, 957, 1561, 1985, 2663, 2664, 2969, 3107
Bse118I	RCCGGY	2 cut(s)	1571, 1601
Bse1I	ACTGG	5 cut(s)	396, 580, 1556, 1566, 2047
Bse3DI	GCAATG	1 cut(s)	2723
BseAI	TCCGGA	1 cut(s)	1520
BseBI	CCWGG	3 cut(s)	385, 2310, 2834
BseDI	CCNNGG	6 cut(s)	94, 383, 1979, 2136, 2508, 2833
BseLI	CCNNNNNNNGG	8 cut(s)	605, 957, 1561, 1985, 2663, 2664, 2969, 3107
BseMI	GCAATG	1 cut(s)	2723
BseMII	CTCAG	5 cut(s)	202, 990, 2486, 2708, 2773
BseNI	ACTGG	5 cut(s)	396, 580, 1556, 1566, 2047
BseRI	GAGGAG	3 cut(s)	191, 2594, 2849
BseSI	GKGCMC	1 cut(s)	2300
BseXI	GCAGC	8 cut(s)	105, 327, 330, 1108, 1749, 2413, 2961, 2964
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	2085
BshFI	GGCC	2 cut(s)	542, 3196
BshNI	GGYRCC	2 cut(s)	947, 965
BsiHKCI	CYCGRG	1 cut(s)	2999
BsiSI	CCGG	6 cut(s)	77, 1521, 1572, 1602, 2518, 3091
BslFI	GGGAC	3 cut(s)	1634, 1668, 2490
BslI	CCNNNNNNNGG	8 cut(s)	605, 957, 1561, 1985, 2663, 2664, 2969, 3107
BsmAI	GTCTC	4 cut(s)	1522, 2135, 2681, 3173
BsmBI	CGTCTC	1 cut(s)	3173
BsmFI	GGGAC	3 cut(s)	1634, 1668, 2490
BsmI	GAATGC	3 cut(s)	1734, 2677, 3219
BsnI	GGCC	2 cut(s)	542, 3196
Bso31I	GGTCTC	2 cut(s)	2135, 2681
BsoBI	CYCGRG	1 cut(s)	2999
Bsp119I	TTCGAA	1 cut(s)	3223
Bsp1286I	GDGCHC	1 cut(s)	2300
Bsp13I	TCCGGA	1 cut(s)	1520
BspACI	CCGC	5 cut(s)	111, 563, 951, 2085, 2729
BspANI	GGCC	2 cut(s)	542, 3196
BspCNI	CTCAG	5 cut(s)	201, 991, 2487, 2709, 2772
BspEI	TCCGGA	1 cut(s)	1520
BspFNI	CGCG	1 cut(s)	2085
BspLI	GGNNCC	4 cut(s)	381, 949, 967, 2461
BspMAI	CTGCAG	1 cut(s)	1060
BspMI	ACCTGC	2 cut(s)	1037, 1941
BspPI	GGATC	2 cut(s)	885, 1055
BspT104I	TTCGAA	1 cut(s)	3223
BspT107I	GGYRCC	2 cut(s)	947, 965
BspTNI	GGTCTC	2 cut(s)	2135, 2681
BsrDI	GCAATG	1 cut(s)	2723
BsrFI	RCCGGY	2 cut(s)	1571, 1601
BsrI	ACTGG	5 cut(s)	396, 580, 1556, 1566, 2047
BssAI	RCCGGY	2 cut(s)	1571, 1601
BssECI	CCNNGG	6 cut(s)	94, 383, 1979, 2136, 2508, 2833
BssNAI	GTATAC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	948
BssT1I	CCWWGG	3 cut(s)	1979, 2136, 2508
Bst1107I	GTATAC	1 cut(s)	649
Bst2UI	CCWGG	3 cut(s)	385, 2310, 2834
Bst4CI	ACNGT	8 cut(s)	970, 1292, 1580, 1625, 1682, 2281, 3011, 3249
Bst6I	CTCTTC	2 cut(s)	40, 498
BstACI	GRCGYC	1 cut(s)	948
BstAPI	GCANNNNNTGC	1 cut(s)	2737
BstBAI	YACGTR	1 cut(s)	938
BstBI	TTCGAA	1 cut(s)	3223
BstC8I	GCNNGC	5 cut(s)	955, 1233, 1573, 2536, 3098
BstEII	GGTNACC	1 cut(s)	2512
BstFNI	CGCG	1 cut(s)	2085
BstH2I	RGCGCY	2 cut(s)	951, 2767
BstHHI	GCGC	4 cut(s)	950, 2085, 2677, 2766
BstMAI	GTCTC	4 cut(s)	1522, 2135, 2681, 3173
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 954, 1581, 1795, 2674, 2737
BstNI	CCWGG	3 cut(s)	385, 2310, 2834
BstNSI	RCATGY	5 cut(s)	790, 957, 1034, 2126, 2740
BstPAI	GACNNNNGTC	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	2512
BstSCI	CCNGG	4 cut(s)	383, 2308, 2516, 2832
BstSFI	CTRYAG	1 cut(s)	1056
BstSLI	GKGCMC	1 cut(s)	2300
BstUI	CGCG	1 cut(s)	2085
BstV1I	GCAGC	8 cut(s)	105, 327, 330, 1108, 1749, 2413, 2961, 2964
BstV2I	GAAGAC	2 cut(s)	1385, 2345
BstX2I	RGATCY	6 cut(s)	877, 1060, 1330, 1357, 1999, 3003
BstXI	CCANNNNNNTGG	2 cut(s)	391, 1239
BstYI	RGATCY	6 cut(s)	877, 1060, 1330, 1357, 1999, 3003
BstZ17I	GTATAC	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	542, 3196
BtsI	GCAGTG	1 cut(s)	2888
BtsIMutI	CAGTG	3 cut(s)	1724, 2040, 2888
BveI	ACCTGC	2 cut(s)	1037, 1941
Cac8I	GCNNGC	5 cut(s)	955, 1233, 1573, 2536, 3098
CfoI	GCGC	4 cut(s)	950, 2085, 2677, 2766
Cfr10I	RCCGGY	2 cut(s)	1571, 1601
Cfr13I	GGNCC	5 cut(s)	693, 1650, 2499, 2520, 3195
CseI	GACGC	2 cut(s)	1925, 2911
Csp6I	GTAC	6 cut(s)	332, 966, 1448, 1559, 1747, 1848
CviQI	GTAC	6 cut(s)	332, 966, 1448, 1559, 1747, 1848
DinI	GGCGCC	1 cut(s)	949
Eam1104I	CTCTTC	2 cut(s)	40, 498
EarI	CTCTTC	2 cut(s)	40, 498
Eco130I	CCWWGG	3 cut(s)	1979, 2136, 2508
Eco31I	GGTCTC	2 cut(s)	2135, 2681
Eco32I	GATATC	1 cut(s)	1948
Eco47I	GGWCC	4 cut(s)	693, 1650, 2499, 2520
Eco57I	CTGAAG	6 cut(s)	294, 1292, 1374, 1700, 1730, 2057
Eco72I	CACGTG	1 cut(s)	938
Eco88I	CYCGRG	1 cut(s)	2999
Eco91I	GGTNACC	1 cut(s)	2512
EcoO109I	RGGNCCY	2 cut(s)	1650, 2499
EcoO65I	GGTNACC	1 cut(s)	2512
EcoRII	CCWGG	3 cut(s)	383, 2308, 2832
EcoRV	GATATC	1 cut(s)	1948
EcoT14I	CCWWGG	3 cut(s)	1979, 2136, 2508
EcoT22I	ATGCAT	1 cut(s)	1488
EgeI	GGCGCC	1 cut(s)	949
EheI	GGCGCC	1 cut(s)	949
ErhI	CCWWGG	3 cut(s)	1979, 2136, 2508
Esp3I	CGTCTC	1 cut(s)	3173
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 579, 611
FaqI	GGGAC	3 cut(s)	1634, 1668, 2490
FauNDI	CATATG	1 cut(s)	1196
FbaI	TGATCA	1 cut(s)	1612
FblI	GTMKAC	2 cut(s)	648, 2890
FspBI	CTAG	9 cut(s)	510, 986, 1421, 1658, 1767, 1895, 2030, 2331, 3158
GlaI	GCGC	4 cut(s)	949, 2084, 2676, 2765
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	2261
HaeII	RGCGCY	2 cut(s)	951, 2767
HaeIII	GGCC	2 cut(s)	542, 3196
HapII	CCGG	6 cut(s)	77, 1521, 1572, 1602, 2518, 3091
HgaI	GACGC	2 cut(s)	1925, 2911
HhaI	GCGC	4 cut(s)	950, 2085, 2677, 2766
Hin1I	GRCGYC	1 cut(s)	948
Hin6I	GCGC	4 cut(s)	948, 2083, 2675, 2764
HinP1I	GCGC	4 cut(s)	948, 2083, 2675, 2764
HincII	GTYRAC	2 cut(s)	85, 424
HindII	GTYRAC	2 cut(s)	85, 424
HindIII	AAGCTT	3 cut(s)	1712, 2486, 2546
HpaII	CCGG	6 cut(s)	77, 1521, 1572, 1602, 2518, 3091
HphI	GGTGA	8 cut(s)	100, 1769, 2057, 2216, 2269, 2461, 2893, 3040
Hpy166II	GTNNAC	8 cut(s)	85, 424, 649, 980, 1448, 1848, 2891, 2942
Hpy8I	GTNNAC	8 cut(s)	85, 424, 649, 980, 1448, 1848, 2891, 2942
Hpy99I	CGWCG	2 cut(s)	2216, 2927
HpyCH4III	ACNGT	8 cut(s)	970, 1292, 1580, 1625, 1682, 2281, 3011, 3249
HpyCH4IV	ACGT	6 cut(s)	396, 812, 937, 1444, 1868, 3166
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 954, 1581, 1795, 2674, 2737
HpySE526I	ACGT	6 cut(s)	396, 812, 937, 1444, 1868, 3166
Hsp92I	GRCGYC	1 cut(s)	948
HspAI	GCGC	4 cut(s)	948, 2083, 2675, 2764
KasI	GGCGCC	1 cut(s)	947
Kpn2I	TCCGGA	1 cut(s)	1520
KpnI	GGTACC	1 cut(s)	969
KroI	GCCGGC	1 cut(s)	1571
KroNI	GCCGGC	1 cut(s)	1573
Ksp22I	TGATCA	1 cut(s)	1612
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	8 cut(s)	105, 327, 330, 1108, 1749, 2413, 2961, 2964
LweI	GCATC	7 cut(s)	160, 1798, 1962, 2122, 2173, 2399, 2847
MaeI	CTAG	9 cut(s)	510, 986, 1421, 1658, 1767, 1895, 2030, 2331, 3158
MaeII	ACGT	6 cut(s)	396, 812, 937, 1444, 1868, 3166
MaeIII	GTNAC	8 cut(s)	751, 928, 1051, 1597, 1830, 2125, 2204, 2512
MfeI	CAATTG	3 cut(s)	600, 1386, 3076
MflI	RGATCY	6 cut(s)	877, 1060, 1330, 1357, 1999, 3003
MhlI	GDGCHC	1 cut(s)	2300
Mly113I	GGCGCC	1 cut(s)	948
MlyI	GAGTC	5 cut(s)	210, 515, 672, 1104, 2991
MmeI	TCCRAC	8 cut(s)	237, 601, 1378, 1465, 1521, 2275, 2298, 2805
Mph1103I	ATGCAT	1 cut(s)	1488
MroI	TCCGGA	1 cut(s)	1520
MroNI	GCCGGC	1 cut(s)	1571
MroXI	GAANNNNTTC	1 cut(s)	2796
MslI	CAYNNNNRTG	1 cut(s)	2169
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	6 cut(s)	77, 1521, 1572, 1602, 2518, 3091
MspR9I	CCNGG	4 cut(s)	385, 2310, 2518, 2834
MunI	CAATTG	3 cut(s)	600, 1386, 3076
Mva1269I	GAATGC	3 cut(s)	1734, 2677, 3219
MvaI	CCWGG	3 cut(s)	385, 2310, 2834
MvnI	CGCG	1 cut(s)	2085
MwoI	GCNNNNNNNGC	6 cut(s)	220, 954, 1581, 1795, 2674, 2737
NaeI	GCCGGC	1 cut(s)	1573
NarI	GGCGCC	1 cut(s)	948
NciI	CCSGG	1 cut(s)	2518
NdeI	CATATG	1 cut(s)	1196
NgoMIV	GCCGGC	1 cut(s)	1571
NlaIV	GGNNCC	4 cut(s)	381, 949, 967, 2461
NmuCI	GTSAC	4 cut(s)	751, 928, 2125, 2204
NsiI	ATGCAT	1 cut(s)	1488
NspI	RCATGY	5 cut(s)	790, 957, 1034, 2126, 2740
NspV	TTCGAA	1 cut(s)	3223
PaeI	GCATGC	1 cut(s)	957
PaeR7I	CTCGAG	1 cut(s)	2999
PaqCI	CACCTGC	1 cut(s)	1037
PcsI	WCGNNNNNNNCGW	2 cut(s)	651, 1373
PctI	GAATGC	3 cut(s)	1734, 2677, 3219
PdiI	GCCGGC	1 cut(s)	1573
PdmI	GAANNNNTTC	1 cut(s)	2796
PfeI	GAWTC	6 cut(s)	305, 2476, 2582, 2792, 2954, 3225
PflFI	GACNNNGTC	2 cut(s)	662, 814
PleI	GAGTC	5 cut(s)	209, 514, 671, 1104, 2991
PluTI	GGCGCC	1 cut(s)	951
PmaCI	CACGTG	1 cut(s)	938
PmlI	CACGTG	1 cut(s)	938
PpsI	GAGTC	5 cut(s)	209, 514, 671, 1104, 2991
Ppu21I	YACGTR	1 cut(s)	938
PpuMI	RGGWCCY	2 cut(s)	1650, 2499
PshAI	GACNNNNGTC	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	1925
Psp1406I	AACGTT	1 cut(s)	3166
Psp5II	RGGWCCY	2 cut(s)	1650, 2499
Psp6I	CCWGG	3 cut(s)	383, 2308, 2832
PspCI	CACGTG	1 cut(s)	938
PspEI	GGTNACC	1 cut(s)	2512
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	3 cut(s)	383, 2308, 2832
PspN4I	GGNNCC	4 cut(s)	381, 949, 967, 2461
PspPI	GGNCC	5 cut(s)	693, 1650, 2499, 2520, 3195
PspPPI	RGGWCCY	2 cut(s)	1650, 2499
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	6 cut(s)	877, 1060, 1330, 1357, 1999, 3003
PsyI	GACNNNGTC	2 cut(s)	662, 814
RsaI	GTAC	6 cut(s)	333, 967, 1449, 1560, 1748, 1849
RsaNI	GTAC	6 cut(s)	332, 966, 1448, 1559, 1747, 1848
RseI	CAYNNNNRTG	1 cut(s)	2169
Sau96I	GGNCC	5 cut(s)	693, 1650, 2499, 2520, 3195
ScaI	AGTACT	1 cut(s)	1560
SchI	GAGTC	5 cut(s)	210, 515, 672, 1104, 2991
ScrFI	CCNGG	4 cut(s)	385, 2310, 2518, 2834
SduI	GDGCHC	1 cut(s)	2300
SfaNI	GCATC	7 cut(s)	160, 1798, 1962, 2122, 2173, 2399, 2847
SfcI	CTRYAG	1 cut(s)	1056
SfoI	GGCGCC	1 cut(s)	949
Sfr274I	CTCGAG	1 cut(s)	2999
SfuI	TTCGAA	1 cut(s)	3223
SinI	GGWCC	4 cut(s)	693, 1650, 2499, 2520
SlaI	CTCGAG	1 cut(s)	2999
SmiMI	CAYNNNNRTG	1 cut(s)	2169
SmlI	CTYRAG	6 cut(s)	335, 883, 1305, 2423, 2917, 2999
SmoI	CTYRAG	6 cut(s)	335, 883, 1305, 2423, 2917, 2999
SphI	GCATGC	1 cut(s)	957
SsiI	CCGC	5 cut(s)	111, 563, 951, 2085, 2729
SspDI	GGCGCC	1 cut(s)	947
SspI	AATATT	2 cut(s)	1162, 1182
SspMI	CTAG	9 cut(s)	510, 986, 1421, 1658, 1767, 1895, 2030, 2331, 3158
StyD4I	CCNGG	4 cut(s)	383, 2308, 2516, 2832
StyI	CCWWGG	3 cut(s)	1979, 2136, 2508
TaaI	ACNGT	8 cut(s)	970, 1292, 1580, 1625, 1682, 2281, 3011, 3249
TaiI	ACGT	6 cut(s)	399, 815, 940, 1447, 1871, 3169
TaqI	TCGA	7 cut(s)	165, 1376, 2058, 2284, 2559, 3000, 3223
TatI	WGTACW	2 cut(s)	1558, 1847
TauI	GCSGC	2 cut(s)	953, 2731
TfiI	GAWTC	6 cut(s)	305, 2476, 2582, 2792, 2954, 3225
TscAI	CASTG	3 cut(s)	1724, 2047, 2888
TseFI	GTSAC	4 cut(s)	751, 928, 2125, 2204
TseI	GCWGC	8 cut(s)	118, 315, 318, 1121, 1762, 2401, 2974, 2977
Tsp45I	GTSAC	4 cut(s)	751, 928, 2125, 2204
TspGWI	ACGGA	1 cut(s)	2144
TspRI	CASTG	3 cut(s)	1724, 2047, 2888
Tth111I	GACNNNGTC	2 cut(s)	662, 814
VpaK11BI	GGWCC	4 cut(s)	693, 1650, 2499, 2520
VspI	ATTAAT	1 cut(s)	1925
XapI	RAATTY	6 cut(s)	158, 710, 827, 862, 2641, 2912
XceI	RCATGY	5 cut(s)	790, 957, 1034, 2126, 2740
XhoI	CTCGAG	1 cut(s)	2999
XmiI	GTMKAC	2 cut(s)	648, 2890
XmnI	GAANNNNTTC	1 cut(s)	2796
XspI	CTAG	9 cut(s)	510, 986, 1421, 1658, 1767, 1895, 2030, 2331, 3158
ZrmI	AGTACT	1 cut(s)	1560
Zsp2I	ATGCAT	1 cut(s)	1488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.