Rorug05G0318100

Serine threonine-protein phosphatase 6 regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
37798016 .. 37798827
812 bp
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UTR
Exon/CDS
Intron
Rorug05G0318100.1

Sequence Viewer

Length: 408 bp
ATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATAAAGAACATCTAAGGATCAATCTTCTTTCTTCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGGTGTATCAACGAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCGTTGTAACTCCCCTAACTCAAGACTGTATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.44

Weight (kDa)

9.83

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 50, 150
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 310, 311
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 2 cut(s) 179, 282
AluI AGCT 2 cut(s) 179, 282
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 297, 300
Asp700I GAANNNNTTC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 301, 351
AsuII TTCGAA 1 cut(s) 153
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BbvI GCAGC 2 cut(s) 309, 312
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 4
BfaI CTAG 2 cut(s) 44, 279
BisI GCNGC 2 cut(s) 298, 301
BlsI GCNGC 2 cut(s) 299, 302
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 3 cut(s) 34, 107, 370
Bsa29I ATCGAT 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 311
Bse1I ACTGG 1 cut(s) 250
BseCI ATCGAT 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 310, 311
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 309, 312
BshFI GGCC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 310, 311
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 153
Bsp143I GATC 2 cut(s) 111, 318
BspACI CCGC 1 cut(s) 205
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 321
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 153
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 111, 318
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 51, 107, 285
BstKTI GATC 2 cut(s) 114, 321
BstMBI GATC 2 cut(s) 111, 318
BstV1I GCAGC 2 cut(s) 309, 312
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 1 cut(s) 19
BsuTUI ATCGAT 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 334
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 202
CviJI RGCY 5 cut(s) 12, 19, 179, 282, 303
CviKI_1 RGCY 5 cut(s) 12, 19, 179, 282, 303
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 51, 107, 285
DpnI GATC 2 cut(s) 113, 320
DpnII GATC 2 cut(s) 111, 318
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 50, 150
FaiI YATR 2 cut(s) 243, 396
Fnu4HI GCNGC 2 cut(s) 298, 301
Fsp4HI GCNGC 2 cut(s) 298, 301
FspBI CTAG 2 cut(s) 44, 279
GluI GCNGC 2 cut(s) 298, 301
HaeIII GGCC 1 cut(s) 19
HinfI GANTC 2 cut(s) 307, 338
HphI GGTGA 2 cut(s) 301, 351
Hpy188I TCNGA 3 cut(s) 69, 130, 232
Hpy188III TCNNGA 1 cut(s) 387
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 393
HpyF3I CTNAG 3 cut(s) 51, 107, 285
Kzo9I GATC 2 cut(s) 111, 318
LpnPI CCDG 3 cut(s) 210, 231, 296
Lsp1109I GCAGC 2 cut(s) 309, 312
MaeI CTAG 2 cut(s) 44, 279
MaeIII GTNAC 2 cut(s) 329, 371
MalI GATC 2 cut(s) 113, 320
MboI GATC 2 cut(s) 111, 318
MboII GAAGA 6 cut(s) 82, 110, 117, 143, 167, 328
MluCI AATT 2 cut(s) 143, 220
MnlI CCTC 4 cut(s) 9, 127, 130, 363
MroXI GAANNNNTTC 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 246
NdeII GATC 2 cut(s) 111, 318
NmuCI GTSAC 1 cut(s) 329
NspV TTCGAA 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 307, 338
PkrI GCNGC 2 cut(s) 299, 302
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 246
SatI GCNGC 2 cut(s) 298, 301
Sau3AI GATC 2 cut(s) 111, 318
SetI ASST 5 cut(s) 141, 181, 284, 291, 355
SfuI TTCGAA 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 3 cut(s) 13, 86, 385
SmoI CTYRAG 3 cut(s) 13, 86, 385
Sse9I AATT 2 cut(s) 143, 220
SsiI CCGC 1 cut(s) 205
SspMI CTAG 2 cut(s) 44, 279
TaaI ACNGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 153, 321
TasI AATT 2 cut(s) 143, 220
TfiI GAWTC 2 cut(s) 307, 338
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 297, 300
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 93, 189
TspRI CASTG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 2 cut(s) 44, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.