Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008361

Physical Location & Seq

Genomic Coordinates Reverse (-)

37799408 .. 37800272

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCCTGCACAATCGACTTCCGCTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGCAGAACCCCGAAGCCGCTTACGACGACGAAGATGCCGCCATGGAAATCGAAGCCACCTACCCACCTCCGGCGAAGCGATCTGTGGTGTCCTTCTCGGAAAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCGGGGCAAAAGTGGAAGCAGACGCGGAAGCAGAGGTCGTCGGCGGTTCAGGTGAGTCGGAAGGGGACGACATTCGAGGAGAGGGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAPS

Protein Analysis

115

Amino Acids

12.59

Weight (kDa)

5.11

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07990 AT1G07990 AT1G08005
fragaria_vesca	FvH4_3g32040 FvH4_3g32040
malus_domestica	MD03G1119200.v1.1 MD11G1137000.v1.1
prunus_persica	Prupe.6G102600_v2.0.a1 Prupe.6G102600_v2.0.a1 Prupe.6G102600_v2.0.a1 Prupe.6G102600_v2.0.a1
pyrus_communis	pycom11g11360
rosa_chinensis	RchiOBHm_Chr5g0058771
rosa_laevigata	RLG00000035247
rosa_multiflora	Rmu_sc0008874.1_g000003
rosa_roxburghii	Rroxscaffold_1G00021630
rosa_rugosa	Rorug05G0318100 Rorug05G0318200 Rorug05G0318300
rosa_samantha	Rh5AG383700 Rh5BG395700 Rh5CG419400
rosa_wichuraiana	Rw5G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	205
Ama87I	CYCGRG	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	265, 311
AvaI	CYCGRG	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbvI	GCAGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	4 cut(s)	25, 46, 81, 102
BlsI	GCNGC	4 cut(s)	26, 47, 82, 103
Bme1390I	CCNGG	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	134, 170, 192
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	202
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	143, 186
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	143, 186
BssT1I	CCWWGG	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	7, 65
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	146, 189
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	143, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 338
BstSCI	CCNGG	1 cut(s)	191
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	7, 65
CfoI	GCGC	1 cut(s)	63
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	5, 39, 80, 119, 332
CviKI_1	RGCY	5 cut(s)	5, 39, 80, 119, 332
CviQI	GTAC	1 cut(s)	311
DpnI	GATC	2 cut(s)	145, 188
DpnII	GATC	2 cut(s)	143, 186
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	25, 46, 81, 102
Fsp4HI	GCNGC	4 cut(s)	25, 46, 81, 102
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	4 cut(s)	25, 46, 81, 102
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	134, 170, 192
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	3 cut(s)	134, 170, 192
HphI	GGTGA	2 cut(s)	265, 311
Hpy188I	TCNGA	2 cut(s)	163, 261
Hpy188III	TCNNGA	2 cut(s)	170, 184
Hpy99I	CGWCG	3 cut(s)	92, 95, 244
HpyAV	CCTTC	6 cut(s)	29, 166, 190, 256, 299, 329
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 338
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	143, 186
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	19, 147, 183, 192, 205, 236
Lsp1109I	GCAGC	1 cut(s)	11
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	29
MalI	GATC	2 cut(s)	145, 188
MboI	GATC	2 cut(s)	143, 186
MboII	GAAGA	3 cut(s)	107, 299, 314
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	141, 228, 271, 276
MroI	TCCGGA	1 cut(s)	169
MseI	TTAA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	3 cut(s)	134, 170, 192
MspR9I	CCNGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	45, 338
NciI	CCSGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	143, 186
NlaIII	CATG	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	26, 47, 82, 103
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	4 cut(s)	25, 46, 81, 102
Sau3AI	GATC	2 cut(s)	143, 186
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	7 cut(s)	56, 125, 133, 201, 239, 255, 334
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	7 cut(s)	22, 45, 81, 102, 226, 245, 327
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	3 cut(s)	15, 114, 276
TasI	AATT	1 cut(s)	343
TauI	GCSGC	3 cut(s)	48, 83, 104
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	1 cut(s)	24
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.