Rorug05G0318300

Serine threonine-protein phosphatase 6 regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
37801850 .. 37802515
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0318300.1

Sequence Viewer

Length: 666 bp
ATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAAAGGAAGAAGTGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCCCATTTAGTAATACTAGCACTACACAGCGACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAATGCTGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCTCTTGTTCACGAGCAGCAGCTCTTTGGTGGTTTTGATATGATGGTTTATGGTTATCATGACCCTGATATTGCACTCGATTCTCCCTACTTACAGTTTGACGAATTTAATGGATTTGATCAAGATCAGCCTAAAGCACTGTATCAGTATTCTGACGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

221

Amino Acids

25.65

Weight (kDa)

4.42

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 605
AdeI CACNNNGTG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 5 cut(s) 145, 161, 176, 182, 340
AhdI GACNNNNNGTC 1 cut(s) 53
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 247, 487
ApeKI GCWGC 4 cut(s) 421, 490, 517, 520
ApoI RAATTY 1 cut(s) 605
AsuHPI GGTGA 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 217
BauI CACGAG 1 cut(s) 512
BbvI GCAGC 4 cut(s) 408, 477, 529, 532
BccI CCATC 2 cut(s) 23, 538
BclI TGATCA 4 cut(s) 265, 346, 367, 619
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 231
BisI GCNGC 4 cut(s) 422, 491, 518, 521
BlsI GCNGC 4 cut(s) 423, 492, 519, 522
BmeRI GACNNNNNGTC 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 120, 624
Bse118I RCCGGY 1 cut(s) 308
Bse8I GATNNNNATC 2 cut(s) 120, 624
BseGI GGATG 3 cut(s) 10, 121, 289
BseJI GATNNNNATC 2 cut(s) 120, 624
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 4 cut(s) 408, 477, 529, 532
BsiSI CCGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 5 cut(s) 265, 346, 367, 619, 625
BspHI TCATGA 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssMI GATC 5 cut(s) 265, 346, 367, 619, 625
BssSI CACGAG 1 cut(s) 512
Bst2BI CACGAG 1 cut(s) 512
Bst4CI ACNGT 5 cut(s) 278, 396, 449, 597, 642
BstAPI GCANNNNNTGC 1 cut(s) 487
BstF5I GGATG 3 cut(s) 10, 121, 289
BstKTI GATC 5 cut(s) 268, 349, 370, 622, 628
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 5 cut(s) 265, 346, 367, 619, 625
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 217
BstV1I GCAGC 4 cut(s) 408, 477, 529, 532
BtsCI GGATG 3 cut(s) 10, 121, 289
BtsIMutI CAGTG 1 cut(s) 638
CaiI CAGNNNCTG 2 cut(s) 247, 487
CciI TCATGA 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 308
CviAII CATG 3 cut(s) 190, 269, 560
CviJI RGCY 5 cut(s) 38, 312, 359, 523, 631
CviKI_1 RGCY 5 cut(s) 38, 312, 359, 523, 631
DpnI GATC 5 cut(s) 267, 348, 369, 621, 627
DpnII GATC 5 cut(s) 265, 346, 367, 619, 625
DraIII CACNNNGTG 1 cut(s) 260
DriI GACNNNNNGTC 1 cut(s) 53
Eam1105I GACNNNNNGTC 1 cut(s) 53
FaeI CATG 3 cut(s) 193, 272, 563
FaiI YATR 9 cut(s) 191, 270, 281, 327, 356, 378, 542, 552, 561
FatI CATG 3 cut(s) 189, 268, 559
FbaI TGATCA 4 cut(s) 265, 346, 367, 619
Fnu4HI GCNGC 4 cut(s) 422, 491, 518, 521
FokI GGATG 3 cut(s) 17, 128, 296
Fsp4HI GCNGC 4 cut(s) 422, 491, 518, 521
FspBI CTAG 1 cut(s) 231
GluI GCNGC 4 cut(s) 422, 491, 518, 521
HapII CCGG 1 cut(s) 309
Hin1II CATG 3 cut(s) 193, 272, 563
HinfI GANTC 4 cut(s) 48, 121, 404, 581
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 12, 511
Hpy188I TCNGA 3 cut(s) 100, 403, 655
Hpy188III TCNNGA 4 cut(s) 365, 512, 560, 623
Hpy8I GTNNAC 2 cut(s) 12, 511
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 5 cut(s) 278, 396, 449, 597, 642
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 2 cut(s) 424, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 3 cut(s) 193, 272, 563
Ksp22I TGATCA 4 cut(s) 265, 346, 367, 619
Kzo9I GATC 5 cut(s) 265, 346, 367, 619, 625
LpnPI CCDG 2 cut(s) 322, 579
Lsp1109I GCAGC 4 cut(s) 408, 477, 529, 532
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 272
MalI GATC 5 cut(s) 267, 348, 369, 621, 627
MboI GATC 5 cut(s) 265, 346, 367, 619, 625
MboII GAAGA 3 cut(s) 87, 100, 399
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 605
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 6 cut(s) 62, 65, 106, 373, 448, 511
MseI TTAA 1 cut(s) 609
MspI CCGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 487
NdeII GATC 5 cut(s) 265, 346, 367, 619, 625
NlaIII CATG 3 cut(s) 193, 272, 563
NspI RCATGY 1 cut(s) 193
PagI TCATGA 1 cut(s) 559
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 3 cut(s) 121, 404, 581
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 4 cut(s) 423, 492, 519, 522
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PscI ACATGT 1 cut(s) 189
PstNI CAGNNNCTG 2 cut(s) 247, 487
PsyI GACNNNGTC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 4 cut(s) 422, 491, 518, 521
Sau3AI GATC 5 cut(s) 265, 346, 367, 619, 625
SchI GAGTC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 294, 442, 525, 660
Sse9I AATT 1 cut(s) 605
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 278, 396, 449, 597, 642
TaiI ACGT 1 cut(s) 660
TaqI TCGA 1 cut(s) 579
TasI AATT 1 cut(s) 605
TfiI GAWTC 3 cut(s) 121, 404, 581
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TscAI CASTG 1 cut(s) 645
TseI GCWGC 4 cut(s) 421, 490, 517, 520
TspRI CASTG 1 cut(s) 645
Tth111I GACNNNGTC 1 cut(s) 136
XapI RAATTY 1 cut(s) 605
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.