Rorug05G0364300

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010729
Physical Location & Seq
Forward (+)
48455545 .. 48455844
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0364300.1

Sequence Viewer

Length: 300 bp
ATGCTTTCTAGTTGTCAACGTGATGGTGAATTGCCCTTACACGTGGTCTGGTTGTTTTGGGACACGGTGTCAAAAAGAGTGAAGTGGTTCGTCTTAATGTTGGTGACTAGGTTGTATCGTTACACTCGGAATTGGTTACTATTCATTGTAGCTCGCGCGTATGGGCGTAAAATTTGGTTAGGGGTTTGGCCATTTTGGCTCATGGATGTCATTCATATTGACGGACCCGTAACTATGGATCAGGTTAGGAATGTGTGTCGTGGTGTTAATACCACAACCGGTCGTTCCAATGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071944 GO:0099402
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

99

Amino Acids

11.77

Weight (kDa)

10.27

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07630 AT2G28890
fragaria_vesca FvH4_3g35990 FvH4_3g35990 FvH4_3g35990
malus_domestica MD03G1094800.v1.1 MD11G1110000.v1.1
prunus_persica Prupe.6G078500_v2.0.a1
pyrus_communis pycom03g07750 pycom11g09070
rosa_chinensis RchiOBHm_Chr5g0064391
rosa_laevigata RLG00000035720
rosa_multiflora Rmu_sc0000806.1_g000039
rosa_roxburghii Rroxscaffold_1G00016610
rosa_rugosa Rorug05G0364300
rosa_samantha Rh5AG422600 Rh5BG438400 Rh5CG461100 Rh5DG451600
rosa_wichuraiana Rw5G039770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 156, 158
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 1 cut(s) 171
AcvI CACGTG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 278
AhdI GACNNNNNGTC 1 cut(s) 67
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 171
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 38, 115
AvaII GGWCC 1 cut(s) 224
BalI TGGCCA 1 cut(s) 190
BbrPI CACGTG 1 cut(s) 43
BccI CCATC 1 cut(s) 17
BfaI CTAG 2 cut(s) 9, 108
BglI GCCNNNNNGGC 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 224
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 226
BsaAI YACGTR 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 278
BseGI GGATG 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 156, 158
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 190
BshTI ACCGGT 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 190
BspFNI CGCG 2 cut(s) 156, 158
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 67
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 156, 158
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstUI CGCG 2 cut(s) 156, 158
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 224
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 202
CviJI RGCY 3 cut(s) 152, 190, 199
CviKI_1 RGCY 3 cut(s) 152, 190, 199
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 43
FaeI CATG 1 cut(s) 205
FaiI YATR 4 cut(s) 162, 203, 216, 236
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 201
FokI GGATG 1 cut(s) 218
FspBI CTAG 2 cut(s) 9, 108
GlaI GCGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 17
HindII GTYRAC 1 cut(s) 17
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 38, 115
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 17
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 19, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpySE526I ACGT 2 cut(s) 19, 42
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 34, 227, 292
MaeI CTAG 2 cut(s) 9, 108
MaeII ACGT 2 cut(s) 19, 42
MaeIII GTNAC 4 cut(s) 103, 119, 135, 229
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 190
MluCI AATT 3 cut(s) 29, 130, 171
MluNI TGGCCA 1 cut(s) 190
Mox20I TGGCCA 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 1 cut(s) 190
MseI TTAA 2 cut(s) 95, 267
Msp20I TGGCCA 1 cut(s) 190
MspI CCGG 1 cut(s) 279
MvnI CGCG 2 cut(s) 156, 158
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 278
PmaCI CACGTG 1 cut(s) 43
PmlI CACGTG 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 43
PspCI CACGTG 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 95, 267
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 224
SetI ASST 5 cut(s) 22, 45, 113, 154, 246
SinI GGWCC 1 cut(s) 224
Sse9I AATT 3 cut(s) 29, 130, 171
SspMI CTAG 2 cut(s) 9, 108
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 22, 45
TasI AATT 3 cut(s) 29, 130, 171
Tru1I TTAA 2 cut(s) 95, 267
Tru9I TTAA 2 cut(s) 95, 267
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 133, 203
TspGWI ACGGA 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 9, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.