Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008410

Physical Location & Seq

Genomic Coordinates Forward (+)

52836974 .. 52841432

Gene Structure 4459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0388800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTGTCGCTCTACCTCAGTTTGCTGAACAACGATCCCAGAGTTAACCGTCATGTTATGGGCTTCGAGCCTGAGCAAATTATGATTCGGTTTCGATATCCTGGATTACAGGTTTGTTTCTGGACCATAGAGAGGAAGCCGAGAAATCATTTGTTATGCGAAGCTAAGAAAAGTGATAAAGCTCAGATCTTGCAGCTCTCAAACAAACTCCAATCAGTAATCAGTGGAAAGCCCTTTCTTTTCTGGACGCTAAACTTCGGGGATGACACTACCTTTCTTGATACTCTTCCTATTGGTAGTGTGATGAACTTCTTTTGGAACTTGATTGTTATTCAAACTCTCAGCAACCAAGAAAGTTCCCTTATATACCTGAAGTGTTGGGACAATTGCGAAATGGATATTCTTTCTGGGGTTAACTTTCATCCACCAATAGCTTTTGGTTTGTCTGGAGACCTTGAATTTGCTCTCGAAGCCAAGAAGTTACAAGTTCAACATGGGAATAACACTGTGAATTCCTTTTCAAGTAGTGGTGGTTGCATTCTAGACTTGCTGCATGAATCTAATCGCTGTCTTGGTTGCATGCGATATCCCTCTGTGGGCAACAATGAGAGGACAGGATGTATAGCGGCTTCCATCAGCCTCAACTTGCTACAATACTTTGAAGGTACACTTCCAACTTACAAGCTTCAAGCACGTCGAGAGCAAAGCTTCTATATGCAATCAGTTCTAATGCAGGTTTTGAACTTTCTTGAAGATAAGCCTTCAGGACACATAAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

260

Amino Acids

29.6

Weight (kDa)

6.99

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46970
fragaria_vesca	FvH4_3g37910 FvH4_3g37910 FvH4_3g37910 FvH4_3g37910 FvH4_3g37910
malus_domestica	MD03G1077800.v1.1 MD05G1167500.v1.1 MD11G1082200.v1.1
prunus_persica	Prupe.6G062600_v2.0.a1
pyrus_communis	pycom03g06170 pycom11g07050
rosa_chinensis	RchiOBHm_Chr5g0068321
rosa_laevigata	RLG00000035965
rosa_multiflora	Rmu_sc0001418.1_g000022
rosa_roxburghii	Rroxscaffold_1G00012440 Rroxscaffold_1G00013180
rosa_rugosa	Rorug05G0388800
rosa_samantha	Rh5AG447300 Rh5BG465400 Rh5CG487000 Rh5DG479000
rosa_wichuraiana	Rw5G041770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	724
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	458, 511
AcuI	CTGAAG	2 cut(s)	392, 747
AfaI	GTAC	1 cut(s)	667
AfiI	CCNNNNNNNGG	2 cut(s)	132, 596
AgsI	TTSAA	8 cut(s)	335, 458, 491, 522, 662, 689, 742, 752
AjiI	CACGTC	1 cut(s)	695
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	6 cut(s)	164, 182, 196, 434, 685, 708
AluI	AGCT	6 cut(s)	164, 182, 196, 434, 685, 708
Alw26I	GTCTC	1 cut(s)	444
AlwI	GGATC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	193, 550
ApoI	RAATTY	2 cut(s)	458, 511
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspS9I	GGNCC	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	123
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BbvI	GCAGC	2 cut(s)	205, 537
BccI	CCATC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	444
BfaI	CTAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	194, 551, 627
BlsI	GCNGC	3 cut(s)	195, 552, 628
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	123
BmgBI	CACGTC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 596
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	3 cut(s)	268, 421, 623
BseLI	CCNNNNNNNGG	2 cut(s)	132, 596
BseMII	CTCAG	4 cut(s)	31, 63, 197, 355
BseXI	GCAGC	2 cut(s)	205, 537
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	132, 596
BsmAI	GTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	537
Bso31I	GGTCTC	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	34, 186
BspACI	CCGC	1 cut(s)	626
BspCNI	CTCAG	4 cut(s)	30, 64, 196, 354
BspMI	ACCTGC	1 cut(s)	724
BspPI	GGATC	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	444
BssMI	GATC	2 cut(s)	34, 186
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	50, 508
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	581
BstDEI	CTNAG	5 cut(s)	17, 72, 165, 183, 341
BstF5I	GGATG	3 cut(s)	268, 421, 623
BstKTI	GATC	2 cut(s)	37, 189
BstMAI	GTCTC	1 cut(s)	444
BstMBI	GATC	2 cut(s)	34, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	205, 537
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	268, 421, 623
BtsIMutI	CAGTG	2 cut(s)	229, 504
BveI	ACCTGC	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	123
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	666
CviAII	CATG	4 cut(s)	53, 494, 554, 580
CviQI	GTAC	1 cut(s)	666
DdeI	CTNAG	5 cut(s)	17, 72, 165, 183, 341
DpnI	GATC	2 cut(s)	36, 188
DpnII	GATC	2 cut(s)	34, 186
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	444
Eco32I	GATATC	2 cut(s)	98, 587
Eco47I	GGWCC	1 cut(s)	123
Eco57I	CTGAAG	2 cut(s)	392, 747
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	2 cut(s)	98, 587
FaeI	CATG	4 cut(s)	56, 497, 557, 583
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	52, 493, 553, 579
Fnu4HI	GCNGC	3 cut(s)	194, 551, 627
FokI	GGATG	3 cut(s)	275, 408, 630
Fsp4HI	GCNGC	3 cut(s)	194, 551, 627
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	3 cut(s)	194, 551, 627
GsuI	CTGGAG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	56, 497, 557, 583
HincII	GTYRAC	2 cut(s)	46, 415
HindII	GTYRAC	2 cut(s)	46, 415
HindIII	AAGCTT	2 cut(s)	683, 706
HinfI	GANTC	2 cut(s)	85, 557
HpaI	GTTAAC	2 cut(s)	46, 415
Hpy166II	GTNNAC	3 cut(s)	46, 415, 668
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	9 cut(s)	121, 244, 278, 447, 467, 542, 698, 749, 765
Hpy8I	GTNNAC	3 cut(s)	46, 415, 668
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	2 cut(s)	656, 771
HpyCH4III	ACNGT	2 cut(s)	50, 508
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	6 cut(s)	193, 537, 553, 579, 718, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	5 cut(s)	17, 72, 165, 183, 341
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	4 cut(s)	56, 497, 557, 583
KspAI	GTTAAC	2 cut(s)	46, 415
Kzo9I	GATC	2 cut(s)	34, 186
Lsp1109I	GCAGC	2 cut(s)	205, 537
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	2 cut(s)	36, 188
MboI	GATC	2 cut(s)	34, 186
MboII	GAAGA	2 cut(s)	278, 764
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	4 cut(s)	78, 385, 458, 511
MmeI	TCCRAC	1 cut(s)	698
MnlI	CCTC	5 cut(s)	26, 126, 601, 603, 650
MseI	TTAA	2 cut(s)	45, 414
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	2 cut(s)	34, 186
NlaIII	CATG	4 cut(s)	56, 497, 557, 583
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	583
PaeI	GCATGC	1 cut(s)	583
PctI	GAATGC	1 cut(s)	537
PfeI	GAWTC	2 cut(s)	85, 557
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	195, 552, 628
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	667
RsaNI	GTAC	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	45, 414
SatI	GCNGC	3 cut(s)	194, 551, 627
Sau3AI	GATC	2 cut(s)	34, 186
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	123
SphI	GCATGC	1 cut(s)	583
Sse9I	AATT	4 cut(s)	78, 385, 458, 511
SsiI	CCGC	1 cut(s)	626
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	50, 508
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	4 cut(s)	66, 94, 468, 697
TasI	AATT	4 cut(s)	78, 385, 458, 511
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	85, 557
Tru1I	TTAA	2 cut(s)	45, 414
Tru9I	TTAA	2 cut(s)	45, 414
TscAI	CASTG	2 cut(s)	229, 511
TseI	GCWGC	2 cut(s)	193, 550
TspDTI	ATGAA	3 cut(s)	320, 410, 570
TspRI	CASTG	2 cut(s)	229, 511
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	458, 511
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	1 cut(s)	583
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.