Rorug05G0413700

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016555
Physical Location & Seq
Reverse (-)
57189591 .. 57190895
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0413700.1

Sequence Viewer

Length: 594 bp
ATGCCGGCTGATGTTGGCATGGTTGTTTCTGAGGGATTCCAAAATCTTCGAATTTTAGCTTTGGGTGATTGTGAGCTCACAGGTCAAATACCAGTGGGGAAAATTCCAGACCTGATATCTAACCTCAAGAACTTGGATACATTGGATCTCTCCATGAATCATTTGTCTGGGAACATCCCTGCATCAGTAAGGAGCCTTAATTTCCTGTCATTTTTCAATGTCTCGTACAATAGTCTTGAAGGACCAATACCAACAAGTACTCAGCTCCAAAGCTTCAATGCCTCTGCATTTGAGGGGAATCAGAAACTTTGTGGTGCTCCACTTCCAAATGAGTGCACACCTAAAAATGGTATTAATGCAAATAAAGAAAATAACCAAGATGAAGAGGATGAGCATGAAATTCCATGGTTTTATATTTTCCTTGTGCTTGGGTTCACTGTAGGCTTTTGGGGAGTTTGCGGTCCTTTAATAATTAAGAAGACATGGAGATATGCATTTTTCCAATTCCTTGACAATGTACGAGATAAGCTCTATGAGAATGGAATTGCAGAGAGAATTGTCTGTTTATTATTGATAATAGGAGCCCTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

197

Amino Acids

21.84

Weight (kDa)

4.69

Isoelectric Point (pI)

25.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016555)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30210
fragaria_vesca FvH4_3g39750
malus_domestica MD03G1056400.v1.1 MD11G1057600.v1.1 MD11G1058200.v1.1
pyrus_communis pycom03g04470 pycom11g04820
rosa_chinensis RchiOBHm_Chr5g0071631
rosa_laevigata RLG00000036231 RLG00000036234
rosa_multiflora Rmu_sc0005745.1_g000031
rosa_rugosa Rorug05G0413700
rosa_samantha Rh5CG513000
rosa_wichuraiana Rw5G043640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 3 cut(s) 51, 102, 399
AfaI GTAC 3 cut(s) 227, 259, 519
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 217, 239, 277
AluBI AGCT 5 cut(s) 59, 76, 265, 273, 529
AluI AGCT 5 cut(s) 59, 76, 265, 273, 529
Alw21I GWGCWC 3 cut(s) 78, 319, 338
Alw26I GTCTC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 334
AlwI GGATC 1 cut(s) 153
ApaLI GTGCAC 1 cut(s) 334
ApoI RAATTY 3 cut(s) 51, 102, 399
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 242, 461
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 242, 461
BaeGI GKGCMC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 78, 586
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 3 cut(s) 78, 319, 338
BciVI GTATCC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 226
BfmI CTRYAG 1 cut(s) 438
BfuI GTATCC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 259
Bme18I GGWCC 2 cut(s) 242, 461
BmgT120I GGNCC 2 cut(s) 242, 461
BmiI GGNNCC 2 cut(s) 194, 583
BmsI GCATC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu14I TTCGAA 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 2 cut(s) 174, 394
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 21, 275
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 338
BsiHKAI GWGCWC 3 cut(s) 78, 319, 338
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 49
Bsp1286I GDGCHC 4 cut(s) 78, 319, 338, 586
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 1 cut(s) 459
BspCNI CTCAG 2 cut(s) 22, 274
BspLI GGNNCC 2 cut(s) 194, 583
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 30, 261
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 2 cut(s) 174, 394
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 2 cut(s) 174, 394
BtsIMutI CAGTG 2 cut(s) 99, 435
Cac8I GCNNGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 2 cut(s) 242, 461
Csp6I GTAC 3 cut(s) 226, 258, 518
CviAII CATG 5 cut(s) 19, 154, 395, 405, 483
CviJI RGCY 9 cut(s) 8, 59, 76, 195, 265, 273, 444, 529, 584
CviKI_1 RGCY 9 cut(s) 8, 59, 76, 195, 265, 273, 444, 529, 584
CviQI GTAC 3 cut(s) 226, 258, 518
DdeI CTNAG 2 cut(s) 30, 261
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 2 cut(s) 78, 586
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 242, 461
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 496
EcoT38I GRGCYC 2 cut(s) 78, 586
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 5 cut(s) 22, 157, 398, 408, 486
FatI CATG 5 cut(s) 18, 153, 394, 404, 482
FokI GGATG 2 cut(s) 161, 401
FriOI GRGCYC 2 cut(s) 78, 586
HapII CCGG 1 cut(s) 5
Hin1II CATG 5 cut(s) 22, 157, 398, 408, 486
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 3 cut(s) 36, 157, 298
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 336, 435
Hpy188I TCNGA 2 cut(s) 31, 303
Hpy188III TCNNGA 3 cut(s) 107, 127, 236
Hpy8I GTNNAC 2 cut(s) 336, 435
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 6 cut(s) 182, 287, 336, 359, 494, 548
HpyF3I CTNAG 2 cut(s) 30, 261
Hsp92II CATG 5 cut(s) 22, 157, 398, 408, 486
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 4 cut(s) 192, 270, 322, 581
LpnPI CCDG 8 cut(s) 18, 66, 105, 120, 125, 153, 192, 218
LweI GCATC 1 cut(s) 191
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 38, 395, 490
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 4 cut(s) 78, 319, 338, 586
MluCI AATT 8 cut(s) 51, 102, 199, 399, 471, 503, 543, 555
MnlI CCTC 5 cut(s) 25, 134, 286, 292, 379
Mph1103I ATGCAT 1 cut(s) 496
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 4 cut(s) 198, 354, 467, 474
MspI CCGG 1 cut(s) 5
NaeI GCCGGC 1 cut(s) 6
NcoI CCATGG 1 cut(s) 404
NdeII GATC 1 cut(s) 145
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 22, 157, 398, 408, 486
NlaIV GGNNCC 2 cut(s) 194, 583
NsiI ATGCAT 1 cut(s) 496
NspV TTCGAA 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 3 cut(s) 36, 157, 298
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 194, 583
PspPI GGNCC 2 cut(s) 242, 461
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 227, 259, 519
RsaNI GTAC 3 cut(s) 226, 258, 518
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 4 cut(s) 198, 354, 467, 474
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 242, 461
ScaI AGTACT 1 cut(s) 259
SduI GDGCHC 4 cut(s) 78, 319, 338, 586
SetI ASST 9 cut(s) 61, 78, 85, 114, 126, 267, 275, 343, 531
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 49
SinI GGWCC 2 cut(s) 242, 461
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 8 cut(s) 51, 102, 199, 399, 471, 503, 543, 555
SsiI CCGC 1 cut(s) 459
SstI GAGCTC 1 cut(s) 78
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 49
TasI AATT 8 cut(s) 51, 102, 199, 399, 471, 503, 543, 555
TatI WGTACW 1 cut(s) 257
TfiI GAWTC 3 cut(s) 36, 157, 298
Tru1I TTAA 4 cut(s) 198, 354, 467, 474
Tru9I TTAA 4 cut(s) 198, 354, 467, 474
TscAI CASTG 2 cut(s) 99, 442
TspDTI ATGAA 3 cut(s) 170, 396, 411
TspRI CASTG 2 cut(s) 99, 442
VneI GTGCAC 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 242, 461
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 3 cut(s) 51, 102, 399
ZrmI AGTACT 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.