Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011696

Physical Location & Seq

Genomic Coordinates Forward (+)

64769847 .. 64774860

Gene Structure 5014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0471400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGTATCCCAAACAAGGATGAGAAGAACAACAAGGGCTTCTTCGCCGCCATGAGTTCCGGCCTCTCCGTCTTCGGCAGCGCCATGCACCGATCCGTTGGCGGGATGCTTGGTTATGAAGGGGTGGAAGTTATAAATCCAGAGGGAGGCAAAGAAGATGCAGAGGAGGAAGCTCAACGAGGAAGGTGGAAGCAGGAGGAACGAGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATATAACATCAATGGTGACTCTTCCTGTATATATTTTTGAGCCAATGACAATGCTGCAGAAAATGGCAGAGCTGATGGAATATTCACACTTGTTGGATCGCGCTGATGAATGTGAGGATCCTTATATGCGGTTGGTGTACTCCACTTCATGGGCTATATCTGTCTACTACGCCTACCAGCGAACATGGAAACCATTTAATCCTATACTTGGGGAGACTTATGAGATGGTTAATCACTGTGGGATTACATTCGTTGCAGAGCAGGTCAGTCATCATCCACCAATGAGTGCTGCTCATGGTGAAAATGAGCATTTCACTTATGATGTGACGTCAAAGCTGAAAACTAAATTTTTAGGGAACTCTCTTGATGTTTACCCTGTTGGAAGAACCCGAGTGACTCTTAAAAGAGATGGTGTAGTCTTAGATTTAGTGCCACCTCCCACAAAGGTAAACAACTTGATATTCGGACGGACTTGGGTTGATTCACCTGGAGAGATGATCATGACAAATCTGACAACTGGGGACAAAGCTGTGCTATGTTTCCAGCCTTGTGGCTGGTTTGGAGCTGGTCGTTATGAAGTGGATGGATATGTTTATAATTCTGCTGAGGAACCTAAGATATTGATGACTGGGAAATGGAATGAATCCATGAATTATCAACCTTGTGACATGGAAGGGGAACCCCTTCCAGGAACAGAATTAAAAGAGAATGATATCTGCAGGTTTGGCATATTGCCGATGTTCCGGAGAATGACAAATTTCAGTACACATACTTTGCACATAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0001558 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009846 GO:0009856 GO:0009987 GO:0010769 GO:0012505 GO:0016020 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033037 GO:0034293 GO:0040007 GO:0040008 GO:0042545 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043934 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048589 GO:0048609 GO:0048638 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051239 GO:0051321 GO:0051510 GO:0051641 GO:0051704 GO:0052386 GO:0052543 GO:0052545 GO:0055047 GO:0060284 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080092 GO:0140014 GO:1903046 GO:1903047 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

343

Amino Acids

39.1

Weight (kDa)

5.38

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxysterol_BP	PF01237	70 - 302	6.5e-81	Oxysterol-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07160 AT3G07160 AT3G07160
fragaria_vesca	FvH4_3g44320
malus_domestica	MD11G1016100.v1.1
prunus_persica	Prupe.6G014200_v2.0.a1 Prupe.6G014200_v2.0.a1
pyrus_communis	pycom11g01130
rosa_chinensis	RchiOBHm_Chr5g0080681
rosa_laevigata	RLG00000036885
rosa_roxburghii	Rroxscaffold_1G00002730
rosa_rugosa	Rorug05G0471400 Rorug05G0471400 Rorug05G0471400
rosa_samantha	Rh5AG524500 Rh5BG546700 Rh5CG570000 Rh5DG556900
rosa_wichuraiana	Rw5G048650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	134, 840
AatII	GACGTC	1 cut(s)	575
Acc36I	ACCTGC	2 cut(s)	496, 954
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	345
AccIII	TCCGGA	1 cut(s)	987
AciI	CCGC	3 cut(s)	48, 102, 373
AclWI	GGATC	4 cut(s)	87, 348, 356, 369
AcsI	RAATTY	2 cut(s)	590, 1000
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	2 cut(s)	383, 1009
AfiI	CCNNNNNNNGG	6 cut(s)	16, 102, 146, 393, 452, 932
AjnI	CCWGG	2 cut(s)	730, 931
AluBI	AGCT	5 cut(s)	173, 316, 580, 773, 809
AluI	AGCT	5 cut(s)	173, 316, 580, 773, 809
Alw26I	GTCTC	2 cut(s)	198, 452
AlwI	GGATC	4 cut(s)	87, 348, 356, 369
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	987
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	78, 298, 533
ApoI	RAATTY	2 cut(s)	590, 1000
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	2 cut(s)	83, 347
AsuHPI	GGTGA	3 cut(s)	271, 554, 720
AvaI	CYCGRG	1 cut(s)	633
BamHI	GGATCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	90, 285, 520
BccI	CCATC	4 cut(s)	313, 463, 647, 821
BciT130I	CCWGG	2 cut(s)	732, 933
BciVI	GTATCC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	198, 452
BfmI	CTRYAG	2 cut(s)	299, 961
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	496, 954
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	4 cut(s)	48, 79, 299, 534
BlsI	GCNGC	4 cut(s)	49, 80, 300, 535
Bme1390I	CCNGG	2 cut(s)	732, 933
BmeT110I	CYCGRG	1 cut(s)	633
BmiI	GGNNCC	3 cut(s)	363, 855, 924
BmrFI	CCNGG	2 cut(s)	732, 933
BmrI	ACTGGG	2 cut(s)	771, 882
BmsI	GCATC	3 cut(s)	96, 148, 213
BmuI	ACTGGG	2 cut(s)	771, 882
BpiI	GAAGAC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	520, 552
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	849
BsaHI	GRCGYC	1 cut(s)	572
BsaWI	WCCGGW	1 cut(s)	987
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 102, 146, 393, 452, 932
Bse1I	ACTGG	3 cut(s)	218, 766, 877
BseAI	TCCGGA	1 cut(s)	987
BseBI	CCWGG	2 cut(s)	732, 933
BseGI	GGATG	4 cut(s)	25, 111, 517, 832
BseLI	CCNNNNNNNGG	6 cut(s)	16, 102, 146, 393, 452, 932
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	3 cut(s)	218, 766, 877
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	90, 285, 520
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	60, 988
BslFI	GGGAC	1 cut(s)	779
BslI	CCNNNNNNNGG	6 cut(s)	16, 102, 146, 393, 452, 932
BsmAI	GTCTC	2 cut(s)	198, 452
BsmFI	GGGAC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	633
Bsp13I	TCCGGA	1 cut(s)	987
Bsp143I	GATC	4 cut(s)	92, 340, 361, 741
BspACI	CCGC	3 cut(s)	48, 102, 373
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	841
BspEI	TCCGGA	1 cut(s)	987
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	744
BspLI	GGNNCC	3 cut(s)	363, 855, 924
BspMAI	CTGCAG	2 cut(s)	303, 965
BspMI	ACCTGC	2 cut(s)	496, 954
BspPI	GGATC	4 cut(s)	87, 348, 356, 369
BsrI	ACTGG	3 cut(s)	218, 766, 877
BssMI	GATC	4 cut(s)	92, 340, 361, 741
BssNI	GRCGYC	1 cut(s)	572
Bst2UI	CCWGG	2 cut(s)	732, 933
Bst4CI	ACNGT	2 cut(s)	209, 482
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	572
BstDEI	CTNAG	3 cut(s)	664, 849, 858
BstF5I	GGATG	4 cut(s)	25, 111, 517, 832
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 347
BstKTI	GATC	4 cut(s)	95, 343, 364, 744
BstMAI	GTCTC	2 cut(s)	198, 452
BstMBI	GATC	4 cut(s)	92, 340, 361, 741
BstMWI	GCNNNNNNNGC	1 cut(s)	969
BstNI	CCWGG	2 cut(s)	732, 933
BstSCI	CCNGG	2 cut(s)	730, 931
BstSFI	CTRYAG	2 cut(s)	299, 961
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	90, 285, 520
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	4 cut(s)	25, 111, 517, 832
BtsIMutI	CAGTG	1 cut(s)	478
BveI	ACCTGC	2 cut(s)	496, 954
CaiI	CAGNNNCTG	1 cut(s)	213
CciI	TCATGA	1 cut(s)	744
CfoI	GCGC	2 cut(s)	83, 347
Csp6I	GTAC	2 cut(s)	382, 1008
CviAII	CATG	8 cut(s)	52, 85, 393, 429, 539, 745, 892, 913
CviQI	GTAC	2 cut(s)	382, 1008
DdeI	CTNAG	3 cut(s)	664, 849, 858
DpnI	GATC	4 cut(s)	94, 342, 363, 743
DpnII	GATC	4 cut(s)	92, 340, 361, 741
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco32I	GATATC	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	633
EcoRII	CCWGG	2 cut(s)	730, 931
EcoRV	GATATC	1 cut(s)	958
FaeI	CATG	8 cut(s)	55, 88, 396, 432, 542, 748, 895, 916
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	779
FatI	CATG	8 cut(s)	51, 84, 392, 428, 538, 744, 891, 912
FauI	CCCGC	1 cut(s)	95
FbaI	TGATCA	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	4 cut(s)	48, 79, 299, 534
FokI	GGATG	4 cut(s)	32, 118, 504, 839
Fsp4HI	GCNGC	4 cut(s)	48, 79, 299, 534
GlaI	GCGC	2 cut(s)	82, 346
GluI	GCNGC	4 cut(s)	48, 79, 299, 534
GsuI	CTGGAG	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	60, 988
HhaI	GCGC	2 cut(s)	83, 347
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	8 cut(s)	55, 88, 396, 432, 542, 748, 895, 916
Hin6I	GCGC	2 cut(s)	81, 345
HinP1I	GCGC	2 cut(s)	81, 345
HinfI	GANTC	4 cut(s)	262, 640, 725, 887
HpaII	CCGG	2 cut(s)	60, 988
HphI	GGTGA	3 cut(s)	271, 554, 720
Hpy166II	GTNNAC	5 cut(s)	382, 409, 616, 694, 1010
Hpy188I	TCNGA	3 cut(s)	244, 710, 756
Hpy188III	TCNNGA	4 cut(s)	140, 608, 745, 988
Hpy8I	GTNNAC	5 cut(s)	382, 409, 616, 694, 1010
HpyAV	CCTTC	4 cut(s)	113, 177, 911, 938
HpyCH4III	ACNGT	2 cut(s)	209, 482
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	7 cut(s)	88, 161, 226, 301, 500, 963, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	969
HpyF3I	CTNAG	3 cut(s)	664, 849, 858
HpySE526I	ACGT	1 cut(s)	572
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	8 cut(s)	55, 88, 396, 432, 542, 748, 895, 916
HspAI	GCGC	2 cut(s)	81, 345
Kpn2I	TCCGGA	1 cut(s)	987
Ksp22I	TGATCA	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	92, 340, 361, 741
LmnI	GCTCC	1 cut(s)	806
Lsp1109I	GCAGC	3 cut(s)	90, 285, 520
LweI	GCATC	3 cut(s)	96, 148, 213
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	5 cut(s)	209, 259, 568, 637, 908
MalI	GATC	4 cut(s)	94, 342, 363, 743
MboI	GATC	4 cut(s)	92, 340, 361, 741
MboII	GAAGA	7 cut(s)	34, 37, 64, 167, 229, 257, 639
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	5 cut(s)	590, 841, 895, 941, 1000
MlyI	GAGTC	2 cut(s)	256, 634
MmeI	TCCRAC	2 cut(s)	318, 604
MroI	TCCGGA	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	4 cut(s)	441, 474, 645, 944
MspI	CCGG	2 cut(s)	60, 988
MspR9I	CCNGG	2 cut(s)	732, 933
MvaI	CCWGG	2 cut(s)	732, 933
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	969
NdeII	GATC	4 cut(s)	92, 340, 361, 741
NlaIII	CATG	8 cut(s)	55, 88, 396, 432, 542, 748, 895, 916
NlaIV	GGNNCC	3 cut(s)	363, 855, 924
NmuCI	GTSAC	4 cut(s)	259, 568, 637, 908
PagI	TCATGA	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	2 cut(s)	725, 887
PflMI	CCANNNNNTGG	1 cut(s)	393
PfoI	TCCNGGA	1 cut(s)	931
PkrI	GCNGC	4 cut(s)	49, 80, 300, 535
PleI	GAGTC	2 cut(s)	256, 634
PpsI	GAGTC	2 cut(s)	256, 634
PsiI	TTATAA	2 cut(s)	134, 840
Psp6I	CCWGG	2 cut(s)	730, 931
PspGI	CCWGG	2 cut(s)	730, 931
PspN4I	GGNNCC	3 cut(s)	363, 855, 924
PstI	CTGCAG	2 cut(s)	303, 965
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	2 cut(s)	383, 1009
RsaNI	GTAC	2 cut(s)	382, 1008
SaqAI	TTAA	4 cut(s)	441, 474, 645, 944
SatI	GCNGC	4 cut(s)	48, 79, 299, 534
Sau3AI	GATC	4 cut(s)	92, 340, 361, 741
SchI	GAGTC	2 cut(s)	256, 634
ScrFI	CCNGG	2 cut(s)	732, 933
SfaNI	GCATC	3 cut(s)	96, 148, 213
SfcI	CTRYAG	2 cut(s)	299, 961
Sse9I	AATT	5 cut(s)	590, 841, 895, 941, 1000
SsiI	CCGC	3 cut(s)	48, 102, 373
SspI	AATATT	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	730, 931
TaaI	ACNGT	2 cut(s)	209, 482
TaiI	ACGT	1 cut(s)	575
TasI	AATT	5 cut(s)	590, 841, 895, 941, 1000
TatI	WGTACW	2 cut(s)	381, 1007
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	725, 887
Tru1I	TTAA	4 cut(s)	441, 474, 645, 944
Tru9I	TTAA	4 cut(s)	441, 474, 645, 944
TscAI	CASTG	1 cut(s)	485
TseFI	GTSAC	4 cut(s)	259, 568, 637, 908
TseI	GCWGC	3 cut(s)	78, 298, 533
Tsp45I	GTSAC	4 cut(s)	259, 568, 637, 908
TspDTI	ATGAA	6 cut(s)	132, 366, 381, 834, 900, 908
TspGWI	ACGGA	3 cut(s)	58, 85, 727
TspRI	CASTG	1 cut(s)	485
Van91I	CCANNNNNTGG	1 cut(s)	393
XapI	RAATTY	2 cut(s)	590, 1000
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	927
ZraI	GACGTC	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.