Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013945

Physical Location & Seq

Genomic Coordinates Forward (+)

74848493 .. 74849160

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0558900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGTATATGACTTCATATTTCTATTCCTATATGTTCATGACAGAAGCTATGCTCAAAAGTGGAATTTCAATGCAGATTTGGTTGGTGGGAGATGGGTTGAGTAAAAAAGAACAGTTGAGTGCACCAAAAGGAACAAGTTTTGTTCCCTTCTCTCAATTTCCACCAAAACAGTTGCGCAGAGACTGCCTCTACCACTACACACCAGCAATGAAGATCCCCAAGTCTCTTGAGAATGTTTACTCTTGTGAGGTGGGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009555 GO:0009561 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0017076 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko01100 ko01120 ko01130 ko01200 ko01230 map00260 map00680 map01100 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C ACT

Protein Analysis

86

Amino Acids

9.93

Weight (kDa)

8.93

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CER1-like_C	PF12076	20 - 84	2.8e-26	CER1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19480 AT4G34200
fragaria_vesca	FvH4_2g05310
malus_domestica	MD05G1088400.v1.1
prunus_persica	Prupe.8G134300_v2.0.a1 Prupe.8G134300_v2.0.a1
pyrus_communis	pycom05g08770
rosa_chinensis	RchiOBHm_Chr6g0255451
rosa_laevigata	RLG00000014836
rosa_multiflora	Rmu_sc0002360.1_g000009
rosa_roxburghii	Rroxscaffold_7G00209970
rosa_rugosa	Rorug05G0558900
rosa_samantha	Rh6AG074800 Rh6BG069400 Rh6CG068400 Rh6DG065200
rosa_wichuraiana	Rw6G006650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	176
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	174, 228
Alw44I	GTGCAC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	183
ApaLI	GTGCAC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BccI	CCATC	1 cut(s)	86
BcoDI	GTCTC	2 cut(s)	174, 228
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpuEI	CTTGAG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	174, 228
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	36
BspPI	GGATC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	213
BssMI	GATC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	114, 171
BstAPI	GCANNNNNTGC	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	2 cut(s)	174, 228
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	177
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	1 cut(s)	47
CviKI_1	RGCY	1 cut(s)	47
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
FaeI	CATG	1 cut(s)	40
FaiI	YATR	7 cut(s)	6, 8, 16, 30, 32, 38, 50
FatI	CATG	1 cut(s)	36
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	122, 238
Hpy188III	TCNNGA	2 cut(s)	37, 227
Hpy8I	GTNNAC	2 cut(s)	122, 238
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	114, 171
HpyCH4V	TGCA	2 cut(s)	73, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	1 cut(s)	216
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	223
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	3 cut(s)	63, 155, 256
MnlI	CCTC	2 cut(s)	197, 241
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	1 cut(s)	40
NsbI	TGCGCA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	183
PsuI	RGATCY	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	2 cut(s)	49, 252
SgeI	CNNG	6 cut(s)	49, 147, 215, 232, 239, 255
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	63, 155, 256
TaaI	ACNGT	2 cut(s)	114, 171
TasI	AATT	3 cut(s)	63, 155, 256
TspDTI	ATGAA	2 cut(s)	25, 224
VneI	GTGCAC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.