Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005161

Physical Location & Seq

Genomic Coordinates Reverse (-)

21498486 .. 21498995

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGCCTTGTCTGTAACGGACCTCTTAATTGGAAAACTTGCGACCATTCTTGAGAACGAAGGAACAACCATAGCAAGTGTTCGTCATGAAGTTGATAAGATTAAGGAGGAGTTTCTAAGCATGAAAGCTTTCCTACTGGATAATATGGTACTGGAACCAGAGAGTACTAAAATAGAAGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0008150 GO:0009524 GO:0009987 GO:0015630 GO:0016043 GO:0022402 GO:0022607 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0051225 GO:0070925 GO:0071840 GO:0080175

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS-augmin3

Protein Analysis

61

Amino Acids

6.76

Weight (kDa)

4.78

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	8 - 47	9.1e-07	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48520 AT5G48520
fragaria_vesca	FvH4_2g17860 FvH4_2g17860 FvH4_2g17860 FvH4_2g17860
malus_domestica	MD10G1152500.v1.1
prunus_persica	Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1 Prupe.8G191000_v2.0.a1
pyrus_communis	pycom10g13150
rosa_chinensis	RchiOBHm_Chr6g0282881
rosa_laevigata	RLG00000012859
rosa_multiflora	Rmu_sc0000159.1_g000055
rosa_roxburghii	Rroxscaffold_7G00185880
rosa_rugosa	Rorug06G0150400 Rorug06G0150500
rosa_samantha	Rh6BG266600 Rh6CG265800 Rh6DG258400
rosa_wichuraiana	Rw6G022770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	150, 166
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	3
Asp700I	GAANNNNTTC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	141, 156
BseNI	ACTGG	2 cut(s)	141, 156
BseRI	GAGGAG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	141, 156
BstDEI	CTNAG	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	5
CciI	TCATGA	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	149, 165
CviAII	CATG	2 cut(s)	86, 121
CviJI	RGCY	2 cut(s)	5, 128
CviKI_1	RGCY	2 cut(s)	5, 128
CviQI	GTAC	2 cut(s)	149, 165
DdeI	CTNAG	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	19
FaeI	CATG	2 cut(s)	89, 124
FaiI	YATR	4 cut(s)	71, 87, 122, 146
FatI	CATG	2 cut(s)	85, 120
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	89, 124
HindIII	AAGCTT	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	50, 86
HpyAV	CCTTC	2 cut(s)	53, 170
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	89, 124
LpnPI	CCDG	3 cut(s)	122, 137, 171
MaeIII	GTNAC	1 cut(s)	13
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	2 cut(s)	32, 100
MroXI	GAANNNNTTC	1 cut(s)	128
MseI	TTAA	2 cut(s)	26, 102
NlaIII	CATG	2 cut(s)	89, 124
NlaIV	GGNNCC	1 cut(s)	156
PagI	TCATGA	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	150, 166
RsaNI	GTAC	2 cut(s)	149, 165
SaqAI	TTAA	2 cut(s)	26, 102
Sau96I	GGNCC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	166
SetI	ASST	2 cut(s)	24, 130
SgeI	CNNG	9 cut(s)	19, 50, 62, 87, 98, 133, 149, 164, 170
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	27
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	26, 102
Tru9I	TTAA	2 cut(s)	26, 102
TspDTI	ATGAA	2 cut(s)	102, 137
TspGWI	ACGGA	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	128
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.