Rorug06G0161000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014461
Physical Location & Seq
Forward (+)
22928126 .. 22930709
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0161000.1

Sequence Viewer

Length: 1212 bp
ATGATGGAGAGTTCGTCGTCCATAACTCCTTTGCTTTTCCGCAACCTTATAACCTCCATCTTCCTTTTGGCAGAGAATTCCATTTGCAGCTTGGCCCAAAAACACAAAGCCCTAGAACTCATACGCTGCGTTTTCGTCTCTTCCTTCCTCTTTTTCCTGCGTTTGCTTCTTTCTTTAAACCCTAGGTCGACCAACAATAATGAATCCCCCTATTCCATCTTGTACGACTATAAAGACAAGCCTCCCAAGAAGGGTATTGGCGGAAGAAATCACAAGTATATGCCCGCAGCTATCAGCGGAGACGACGACGGCAGCGGCAGCGACACGGCTATAGCTCGAGCACTTTCGCAGCTACTGTCGATCGTCAATAATATCCCGGTAAGCTCCCGCAAGTACCAAGGTGTTCGATCTTTAGCGGAGAACGTCATCTATGACAACCAGAGAGAGGGAGTGGAGGCTTTGCGTCAAGTGAATCGCACGGTTCTGTCGGCAGCGTTTTCGAGGACTCTAAGCCAGCTTGAAGCCGCCTCAACTCTCGAACAGCAGCAGGACGGCGGGGGCGGCGGCGATGGTGATATTGATGGTTTGGATTCTGGTCATCATCATTGGATAGTACGGGCCGTTCGGTCAGTTGCGGGCGTGGTGTGGACGAAGGGGGTTAGCAGCGGCGGCTCGAGGAGCTCGGCGGAGAAGCTAGCGGCGGAGCTGCTCTGGTTGGCTGAGACGATGGCGGCTTGTGGCTTTGCTAAAGAGTCTGTGAGGAGATGGGCGTTAGCCTCTAGTTTGGCTCGCCTCTCTCTTTCAGCCGAGCCGCGCCTGCAGGCCTCCTTAGTCAAGATTACAGCATTGTTGTTGAAGTATGCTAAAGATATGGGAGTGGATGAAGATGATGATAATGAGAGCACGAAAGAGCAGCAAGAAAGAAAACAAGCAAAGATGCAAATGCAGATGTTGGTGTTGTGGATTCCGTTGCTGTGCACAGCCAGCAATGGCACTGATGTGCCTGTTTTGAGCATCAGCGAAAGGGCTGAGCTGGAGAGAGTACTGGAAGAGACCATAGAGAAGCTGGCAGAAGAAGATCAAGAGCGAGTTCTATCCTTGTGGCTCCACCAATTCACATATTGCTCCTCTTCTGATTGGCCCAATTTACATGCCTCGTATGCTCGCTGGTGTAATGCTTCGCGCAAGCACTTGCTAATTCACAATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

44.56

Weight (kDa)

6.34

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07210
fragaria_vesca FvH4_2g18560
malus_domestica MD05G1171800.v1.1 MD10G1160100.v1.1
prunus_persica Prupe.8G199200_v2.0.a1
pyrus_communis pycom05g15850 pycom10g13820
rosa_chinensis RchiOBHm_Chr6g0284121
rosa_laevigata RLG00000012768
rosa_multiflora Rmu_sc0003778.1_g000037
rosa_roxburghii Rroxscaffold_7G00184910
rosa_rugosa Rorug06G0161000
rosa_samantha Rh6AG273800 Rh6BG274500 Rh6CG275900 Rh6DG268900
rosa_wichuraiana Rw6G023560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccI GTMKAC 1 cut(s) 188
AccII CGCG 2 cut(s) 814, 1183
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 4 cut(s) 224, 395, 615, 1044
AfiI CCNNNNNNNGG 2 cut(s) 251, 445
AgsI TTSAA 2 cut(s) 521, 856
AleI CACNNNNGTG 1 cut(s) 998
Alw21I GWGCWC 4 cut(s) 343, 683, 905, 980
Alw26I GTCTC 4 cut(s) 142, 294, 716, 1046
Alw44I GTGCAC 1 cut(s) 976
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 2 cut(s) 336, 673
AoxI GGCC 4 cut(s) 93, 618, 822, 1139
ApaLI GTGCAC 1 cut(s) 976
ApoI RAATTY 1 cut(s) 76
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 816, 1185
AspS9I GGNCC 3 cut(s) 94, 618, 1140
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 584
AsuNHI GCTAGC 1 cut(s) 694
AvaI CYCGRG 2 cut(s) 336, 673
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 980
BanII GRGCYC 1 cut(s) 683
Bbv12I GWGCWC 4 cut(s) 343, 683, 905, 980
BccI CCATC 6 cut(s) 65, 224, 563, 575, 721, 759
BceAI ACGGC 4 cut(s) 325, 342, 568, 605
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 4 cut(s) 142, 294, 716, 1046
BfaI CTAG 4 cut(s) 113, 183, 695, 780
BfmI CTRYAG 2 cut(s) 330, 818
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 1029
BmcAI AGTACT 1 cut(s) 1044
Bme1390I CCNGG 1 cut(s) 377
BmeT110I CYCGRG 2 cut(s) 336, 673
BmgT120I GGNCC 3 cut(s) 94, 618, 1140
BmiI GGNNCC 1 cut(s) 1106
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 2 cut(s) 927, 1023
BmtI GCTAGC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 1055
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 2 cut(s) 182, 397
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 445
Bse1I ACTGG 1 cut(s) 1050
Bse3DI GCAATG 1 cut(s) 994
BseDI CCNNGG 2 cut(s) 182, 397
BseGI GGATG 1 cut(s) 886
BseLI CCNNNNNNNGG 2 cut(s) 251, 445
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 2 cut(s) 711, 1020
BseNI ACTGG 1 cut(s) 1050
BseRI GAGGAG 3 cut(s) 691, 775, 1117
BseSI GKGCMC 1 cut(s) 980
Bsh1236I CGCG 2 cut(s) 814, 1183
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 4 cut(s) 95, 620, 824, 1141
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 4 cut(s) 343, 683, 905, 980
BsiHKCI CYCGRG 2 cut(s) 336, 673
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 251, 445
BsmAI GTCTC 4 cut(s) 142, 294, 716, 1046
BsmBI CGTCTC 3 cut(s) 142, 294, 716
BsnI GGCC 4 cut(s) 95, 620, 824, 1141
Bso31I GGTCTC 1 cut(s) 1046
BsoBI CYCGRG 2 cut(s) 336, 673
Bsp1286I GDGCHC 4 cut(s) 343, 683, 905, 980
Bsp143I GATC 3 cut(s) 360, 407, 1078
Bsp1720I GCTNAGC 1 cut(s) 1029
BspANI GGCC 4 cut(s) 95, 620, 824, 1141
BspCNI CTCAG 2 cut(s) 712, 1021
BspFNI CGCG 2 cut(s) 814, 1183
BspLI GGNNCC 1 cut(s) 1106
BspMAI CTGCAG 1 cut(s) 822
BspOI GCTAGC 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 994
BsrI ACTGG 1 cut(s) 1050
BssECI CCNNGG 2 cut(s) 182, 397
BssMI GATC 3 cut(s) 360, 407, 1078
BssT1I CCWWGG 2 cut(s) 182, 397
Bst4CI ACNGT 2 cut(s) 357, 481
Bst6I CTCTTC 3 cut(s) 145, 1044, 1135
BstDEI CTNAG 4 cut(s) 509, 720, 829, 1029
BstF5I GGATG 1 cut(s) 886
BstFNI CGCG 2 cut(s) 814, 1183
BstHHI GCGC 2 cut(s) 816, 1185
BstKTI GATC 3 cut(s) 363, 410, 1081
BstMAI GTCTC 4 cut(s) 142, 294, 716, 1046
BstMBI GATC 3 cut(s) 360, 407, 1078
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 7 cut(s) 318, 561, 669, 678, 817, 984, 1160
BstNSI RCATGY 1 cut(s) 1154
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 330, 818
BstSLI GKGCMC 1 cut(s) 980
BstUI CGCG 2 cut(s) 814, 1183
BsuRI GGCC 4 cut(s) 95, 620, 824, 1141
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 1 cut(s) 886
BtsIMutI CAGTG 1 cut(s) 993
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 2 cut(s) 816, 1185
Cfr13I GGNCC 3 cut(s) 94, 618, 1140
CseI GACGC 1 cut(s) 452
Csp6I GTAC 4 cut(s) 223, 394, 614, 1043
CviAII CATG 1 cut(s) 1151
CviQI GTAC 4 cut(s) 223, 394, 614, 1043
DdeI CTNAG 4 cut(s) 509, 720, 829, 1029
DpnI GATC 3 cut(s) 362, 409, 1080
DpnII GATC 3 cut(s) 360, 407, 1078
DraI TTTAAA 1 cut(s) 177
Eam1104I CTCTTC 3 cut(s) 145, 1044, 1135
EarI CTCTTC 3 cut(s) 145, 1044, 1135
EciI GGCGGA 3 cut(s) 276, 701, 716
Ecl136II GAGCTC 1 cut(s) 681
Eco130I CCWWGG 2 cut(s) 182, 397
Eco147I AGGCCT 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 683
Eco31I GGTCTC 1 cut(s) 1046
Eco53kI GAGCTC 1 cut(s) 681
Eco88I CYCGRG 2 cut(s) 336, 673
EcoICRI GAGCTC 1 cut(s) 681
EcoRI GAATTC 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 182, 397
EcoT38I GRGCYC 1 cut(s) 683
ErhI CCWWGG 2 cut(s) 182, 397
Esp3I CGTCTC 3 cut(s) 142, 294, 716
FaeI CATG 1 cut(s) 1154
FatI CATG 1 cut(s) 1150
FauI CCCGC 4 cut(s) 292, 395, 548, 628
FblI GTMKAC 1 cut(s) 188
FokI GGATG 1 cut(s) 893
FriOI GRGCYC 1 cut(s) 683
FspBI CTAG 4 cut(s) 113, 183, 695, 780
GlaI GCGC 2 cut(s) 815, 1184
GsuI CTGGAG 1 cut(s) 1055
HaeIII GGCC 4 cut(s) 95, 620, 824, 1141
HapII CCGG 1 cut(s) 377
HgaI GACGC 1 cut(s) 452
HhaI GCGC 2 cut(s) 816, 1185
Hin1II CATG 1 cut(s) 1154
Hin6I GCGC 2 cut(s) 814, 1183
HinP1I GCGC 2 cut(s) 814, 1183
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 6 cut(s) 203, 472, 505, 590, 752, 964
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 189, 648, 978
Hpy188I TCNGA 1 cut(s) 1135
Hpy188III TCNNGA 3 cut(s) 536, 835, 1082
Hpy8I GTNNAC 3 cut(s) 189, 648, 978
Hpy99I CGWCG 3 cut(s) 19, 308, 311
HpyAV CCTTC 3 cut(s) 154, 244, 646
HpyCH4III ACNGT 2 cut(s) 357, 481
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 5 cut(s) 87, 820, 940, 946, 978
HpyF10VI GCNNNNNNNGC 7 cut(s) 318, 561, 669, 678, 817, 984, 1160
HpyF3I CTNAG 4 cut(s) 509, 720, 829, 1029
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 1 cut(s) 1154
HspAI GCGC 2 cut(s) 814, 1183
Kzo9I GATC 3 cut(s) 360, 407, 1078
LmnI GCTCC 5 cut(s) 389, 678, 703, 1110, 1130
LweI GCATC 2 cut(s) 927, 1023
MaeI CTAG 4 cut(s) 113, 183, 695, 780
MaeII ACGT 1 cut(s) 423
MalI GATC 3 cut(s) 362, 409, 1080
MboI GATC 3 cut(s) 360, 407, 1078
MboII GAAGA 8 cut(s) 52, 132, 276, 896, 1061, 1085, 1088, 1122
MhlI GDGCHC 4 cut(s) 343, 683, 905, 980
MluCI AATT 5 cut(s) 76, 1112, 1144, 1197, 1204
MlyI GAGTC 2 cut(s) 499, 761
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 998
MspA1I CMGCKG 3 cut(s) 297, 315, 666
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 377
MvnI CGCG 2 cut(s) 814, 1183
MwoI GCNNNNNNNGC 7 cut(s) 318, 561, 669, 678, 817, 984, 1160
NciI CCSGG 1 cut(s) 377
NdeII GATC 3 cut(s) 360, 407, 1078
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 1 cut(s) 1154
NlaIV GGNNCC 1 cut(s) 1106
NmeAIII GCCGAG 2 cut(s) 662, 832
NspI RCATGY 1 cut(s) 1154
OliI CACNNNNGTG 1 cut(s) 998
PaeR7I CTCGAG 2 cut(s) 336, 673
PceI AGGCCT 1 cut(s) 824
PfeI GAWTC 4 cut(s) 203, 472, 590, 964
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 2 cut(s) 499, 760
PpsI GAGTC 2 cut(s) 499, 760
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 683
PspN4I GGNNCC 1 cut(s) 1106
PspPI GGNCC 3 cut(s) 94, 618, 1140
PspXI VCTCGAGB 2 cut(s) 336, 673
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PstI CTGCAG 1 cut(s) 822
PstNI CAGNNNCTG 1 cut(s) 355
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 4 cut(s) 224, 395, 615, 1044
RsaNI GTAC 4 cut(s) 223, 394, 614, 1043
RseI CAYNNNNRTG 1 cut(s) 998
SacI GAGCTC 1 cut(s) 683
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 3 cut(s) 360, 407, 1078
Sau96I GGNCC 3 cut(s) 94, 618, 1140
SbfI CCTGCAGG 1 cut(s) 822
ScaI AGTACT 1 cut(s) 1044
SchI GAGTC 2 cut(s) 499, 761
ScrFI CCNGG 1 cut(s) 377
SdaI CCTGCAGG 1 cut(s) 822
SduI GDGCHC 4 cut(s) 343, 683, 905, 980
SfaNI GCATC 2 cut(s) 927, 1023
SfcI CTRYAG 2 cut(s) 330, 818
Sfr274I CTCGAG 2 cut(s) 336, 673
SlaI CTCGAG 2 cut(s) 336, 673
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 2 cut(s) 336, 673
SmoI CTYRAG 2 cut(s) 336, 673
Sse8387I CCTGCAGG 1 cut(s) 822
Sse9I AATT 5 cut(s) 76, 1112, 1144, 1197, 1204
SseBI AGGCCT 1 cut(s) 824
SspMI CTAG 4 cut(s) 113, 183, 695, 780
SstI GAGCTC 1 cut(s) 683
StuI AGGCCT 1 cut(s) 824
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 182, 397
TaaI ACNGT 2 cut(s) 357, 481
TaiI ACGT 1 cut(s) 426
TaqI TCGA 7 cut(s) 188, 337, 359, 406, 500, 537, 674
TaqII GACCGA 1 cut(s) 615
TasI AATT 5 cut(s) 76, 1112, 1144, 1197, 1204
TatI WGTACW 1 cut(s) 1042
TauI GCSGC 9 cut(s) 318, 527, 564, 567, 669, 672, 701, 734, 814
TfiI GAWTC 4 cut(s) 203, 472, 590, 964
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 1000
TspDTI ATGAA 3 cut(s) 216, 897, 1197
TspGWI ACGGA 1 cut(s) 957
TspRI CASTG 1 cut(s) 1000
VneI GTGCAC 1 cut(s) 976
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 1154
XcmI CCANNNNNNNNNTGG 3 cut(s) 64, 88, 1063
XhoI CTCGAG 2 cut(s) 336, 673
XmaJI CCTAGG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 188
XspI CTAG 4 cut(s) 113, 183, 695, 780
ZrmI AGTACT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.