Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008662

Physical Location & Seq

Genomic Coordinates Reverse (-)

46089806 .. 46091472

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGCTGTGGATCGTAGTGAGGCTGAGAAGACGGTGAAAGAATTTGACGAAACCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGAGTGACCAAGATCCCAAGAATGTTCGTACACCCTCTAGAGGATTTGCAACAAAACAACATGGATCATGATCTCCGAGTTCCAATGATTGATCTCAAAGGCCTTGATCAGAGCCCCGAGAGGCGAAAAGAAGTCATCAATCAGATAAGCAAAGCAGCTGAAGCGTGGGGCTTCTTTCAGATAGTGAACCATGGAGTTCCACTTGATGTTATGGAGGAGGTGCTGAAAAGTGTTCGACGCTTTCACGAGCAGCCCCATGAAGCCAAGGTGGAATGGTACTCACGCGATTTTACAAAAAAGGTAAACTACTTCAGCAATGGCTATTTGAAGTTGTCCACTCCGGCGGATTGGAGGGACACGTTATCCTGCAACTGCCAGTTCCTAGAAGATGAAAGCAACTTCCAAGCGCTGCCTCGAGTATGCAGATGTGAAATTGTGGAGTACAGTAAGCACTTGACTGTACTCCGGGAGAAACTGTCCGAATTATTGTCTGAAGCTTTAGGCCTAAGCAGTGACTACCTTTCAACCCTAGGGTGCTTCAAATCATCAACACTATCGTGCCATTATTACCCAGTTTGCCCTGAGCCCCATTTGACTTTAGGTGCAACCAAGCACTCGGACATCCTCTTTCTCACTTTGCTGCTTCAGGACAGTAGTGGTGGCTTCCAAGTGCTTCATCAAAATGTTTGGGTTAATGTTCCTCCACTGCAGGGAGTTTTGGTAGCAAATATTGGTGACATGATGCAGATCACTAGCAATGACAAGTTCAAGAGTGTGGAGCACAGAGTTTTGGCAACACGACTTGCAGAGCCCCGAACATCAGTTGCATGTTTCTTCACTGCAGACGACAAGCTCAAACCATTCGGGCCAATAAAAGAGCTCGTATCAGATGTCAATCCCCCAATTTACAGGAACAATATCAGTTTTGGGGAATACATAGCCTATTATAGGCAGAAGGGACAAGATGGAAACTCTAAAATTCCTCATTTTAGACTCATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009690 GO:0009823 GO:0009987 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0034754 GO:0042445 GO:0042447 GO:0044237 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

363

Amino Acids

41.37

Weight (kDa)

6.2

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 161	2.1e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	212 - 309	5.6e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75450 AT1G75450
fragaria_vesca	FvH4_2g39230 FvH4_2g39230 FvH4_2g39230
malus_domestica	MD08G1023900.v1.1 MD15G1021500.v1.1
prunus_persica	Prupe.1G373300_v2.0.a1
pyrus_communis	pycom08g01870 pycom15g01780
rosa_chinensis	RchiOBHm_Chr6g0301781
rosa_laevigata	RLG00000011222
rosa_multiflora	Rmu_sc0005454.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166410
rosa_rugosa	Rorug06G0309500 Rorug06G0309600 Rorug06G0309700 Rorug06G0309800
rosa_samantha	Rh6AG421500 Rh6BG428300 Rh6CG434800 Rh6DG421700
rosa_wichuraiana	Rw6G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	3 cut(s)	21, 94, 159
AcsI	RAATTY	2 cut(s)	44, 1065
AcuI	CTGAAG	4 cut(s)	267, 382, 600, 716
AfaI	GTAC	4 cut(s)	117, 365, 530, 549
AfeI	AGCGCT	1 cut(s)	495
AfiI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	4 cut(s)	415, 612, 628, 856
AleI	CACNNNNGTG	1 cut(s)	643
AluBI	AGCT	6 cut(s)	8, 62, 245, 584, 940, 967
AluI	AGCT	6 cut(s)	8, 62, 245, 584, 940, 967
Alw21I	GWGCWC	2 cut(s)	870, 969
AlwI	GGATC	3 cut(s)	21, 94, 159
Ama87I	CYCGRG	2 cut(s)	203, 501
Aor51HI	AGCGCT	1 cut(s)	495
AoxI	GGCC	3 cut(s)	187, 589, 953
ApeKI	GCWGC	4 cut(s)	242, 337, 496, 727
ApoI	RAATTY	2 cut(s)	44, 1065
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
AspA2I	CCTAGG	1 cut(s)	616
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	953
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	49, 833
AvaI	CYCGRG	2 cut(s)	203, 501
AvrII	CCTAGG	1 cut(s)	616
BanII	GRGCYC	4 cut(s)	203, 675, 900, 969
BauI	CACGAG	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	870, 969
BbvI	GCAGC	4 cut(s)	254, 349, 483, 714
BccI	CCATC	1 cut(s)	1046
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	554
BfaI	CTAG	4 cut(s)	125, 470, 617, 840
BfmI	CTRYAG	2 cut(s)	794, 927
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	4 cut(s)	243, 338, 497, 728
BlnI	CCTAGG	1 cut(s)	616
BlsI	GCNGC	4 cut(s)	244, 339, 498, 729
Bme1390I	CCNGG	1 cut(s)	554
BmeT110I	CYCGRG	2 cut(s)	203, 501
BmgT120I	GGNCC	1 cut(s)	953
BmrFI	CCNGG	1 cut(s)	554
BmrI	ACTGGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	819
BmuI	ACTGGG	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	2 cut(s)	593, 669
BpuMI	CCSGG	1 cut(s)	554
BsaBI	GATNNNNATC	3 cut(s)	156, 833, 981
BsaJI	CCNNGG	3 cut(s)	277, 351, 616
BsaXI	ACNNNNNCTCC	4 cut(s)	548, 578, 792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
Bse1I	ACTGG	2 cut(s)	463, 659
Bse3DI	GCAATG	2 cut(s)	409, 850
Bse8I	GATNNNNATC	3 cut(s)	156, 833, 981
BseDI	CCNNGG	3 cut(s)	277, 351, 616
BseGI	GGATG	1 cut(s)	708
BseJI	GATNNNNATC	3 cut(s)	156, 833, 981
BseLI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
BseMI	GCAATG	2 cut(s)	409, 850
BseMII	CTCAG	2 cut(s)	18, 660
BseNI	ACTGG	2 cut(s)	463, 659
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	254, 349, 483, 714
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	3 cut(s)	189, 591, 955
BsiHKAI	GWGCWC	2 cut(s)	870, 969
BsiHKCI	CYCGRG	2 cut(s)	203, 501
BsiSI	CCGG	2 cut(s)	428, 553
BslFI	GGGAC	2 cut(s)	455, 1059
BslI	CCNNNNNNNGG	3 cut(s)	127, 797, 1035
BsmFI	GGGAC	2 cut(s)	455, 1059
BsnI	GGCC	3 cut(s)	189, 591, 955
BsoBI	CYCGRG	2 cut(s)	203, 501
Bsp1286I	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
Bsp143I	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	3 cut(s)	189, 591, 955
BspCNI	CTCAG	2 cut(s)	19, 661
BspFNI	CGCG	1 cut(s)	372
BspHI	TCATGA	2 cut(s)	154, 1083
BspMAI	CTGCAG	2 cut(s)	798, 931
BspPI	GGATC	3 cut(s)	21, 94, 159
BsrDI	GCAATG	2 cut(s)	409, 850
BsrI	ACTGG	2 cut(s)	463, 659
BssECI	CCNNGG	3 cut(s)	277, 351, 616
BssMI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	3 cut(s)	277, 351, 616
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	5 cut(s)	37, 533, 547, 564, 740
BstDEI	CTNAG	3 cut(s)	27, 593, 669
BstDSI	CCRYGG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	1033
BstF5I	GGATG	1 cut(s)	708
BstFNI	CGCG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	7 cut(s)	16, 102, 154, 160, 181, 196, 837
BstMBI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	918
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	2 cut(s)	794, 927
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	254, 349, 483, 714
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	189, 591, 955
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	708
BtsI	GCAGTG	3 cut(s)	604, 791, 924
BtsIMutI	CAGTG	3 cut(s)	604, 791, 924
CciI	TCATGA	2 cut(s)	154, 1083
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	953
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	4 cut(s)	116, 364, 529, 548
CviAII	CATG	7 cut(s)	148, 155, 278, 344, 826, 915, 1084
CviQI	GTAC	4 cut(s)	116, 364, 529, 548
DdeI	CTNAG	3 cut(s)	27, 593, 669
DpnI	GATC	7 cut(s)	15, 101, 153, 159, 180, 195, 836
DpnII	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	967
Eco130I	CCWWGG	3 cut(s)	277, 351, 616
Eco147I	AGGCCT	2 cut(s)	189, 591
Eco24I	GRGCYC	4 cut(s)	203, 675, 900, 969
Eco47III	AGCGCT	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	967
Eco57I	CTGAAG	4 cut(s)	267, 382, 600, 716
Eco88I	CYCGRG	2 cut(s)	203, 501
EcoICRI	GAGCTC	1 cut(s)	967
EcoNI	CCTNNNNNAGG	1 cut(s)	1033
EcoT14I	CCWWGG	3 cut(s)	277, 351, 616
EcoT38I	GRGCYC	4 cut(s)	203, 675, 900, 969
ErhI	CCWWGG	3 cut(s)	277, 351, 616
FaeI	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
FaqI	GGGAC	2 cut(s)	455, 1059
FatI	CATG	7 cut(s)	147, 154, 277, 343, 825, 914, 1083
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	243, 338, 497, 728
FokI	GGATG	1 cut(s)	695
FriOI	GRGCYC	4 cut(s)	203, 675, 900, 969
Fsp4HI	GCNGC	4 cut(s)	243, 338, 497, 728
FspBI	CTAG	4 cut(s)	125, 470, 617, 840
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	4 cut(s)	243, 338, 497, 728
GsuI	CTGGAG	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	3 cut(s)	189, 591, 955
HapII	CCGG	2 cut(s)	428, 553
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	2 cut(s)	83, 1080
HpaII	CCGG	2 cut(s)	428, 553
HphI	GGTGA	2 cut(s)	49, 833
Hpy166II	GTNNAC	5 cut(s)	82, 118, 274, 391, 423
Hpy188I	TCNGA	8 cut(s)	164, 198, 231, 267, 568, 580, 706, 976
Hpy188III	TCNNGA	7 cut(s)	87, 125, 155, 332, 734, 856, 1084
Hpy8I	GTNNAC	5 cut(s)	82, 118, 274, 391, 423
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	1036
HpyCH4III	ACNGT	5 cut(s)	37, 533, 547, 564, 740
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	9 cut(s)	136, 456, 510, 692, 796, 832, 893, 914, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	27, 593, 669
HpySE526I	ACGT	1 cut(s)	446
Hsp92II	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
HspAI	GCGC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	4 cut(s)	254, 349, 483, 714
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	4 cut(s)	125, 470, 617, 840
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	3 cut(s)	91, 599, 821
MalI	GATC	7 cut(s)	15, 101, 153, 159, 180, 195, 836
MboI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
MboII	GAAGA	3 cut(s)	43, 485, 913
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
MluCI	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
MlyI	GAGTC	2 cut(s)	77, 1074
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	2 cut(s)	643, 768
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	428, 553
MspR9I	CCNGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	554
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
NlaIII	CATG	7 cut(s)	151, 158, 281, 347, 829, 918, 1087
NmuCI	GTSAC	3 cut(s)	91, 599, 821
NspI	RCATGY	1 cut(s)	918
OliI	CACNNNNGTG	1 cut(s)	643
PaeR7I	CTCGAG	1 cut(s)	501
PagI	TCATGA	2 cut(s)	154, 1083
PceI	AGGCCT	2 cut(s)	189, 591
PfoI	TCCNGGA	1 cut(s)	552
PkrI	GCNGC	4 cut(s)	244, 339, 498, 729
PleI	GAGTC	2 cut(s)	77, 1074
PpsI	GAGTC	2 cut(s)	77, 1074
Psp124BI	GAGCTC	1 cut(s)	969
PspPI	GGNCC	1 cut(s)	953
PspXI	VCTCGAGB	1 cut(s)	501
PstI	CTGCAG	2 cut(s)	798, 931
PsuI	RGATCY	1 cut(s)	99
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	4 cut(s)	117, 365, 530, 549
RsaNI	GTAC	4 cut(s)	116, 364, 529, 548
RseI	CAYNNNNRTG	2 cut(s)	643, 768
SacI	GAGCTC	1 cut(s)	969
SalI	GTCGAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	4 cut(s)	243, 338, 497, 728
Sau3AI	GATC	7 cut(s)	13, 99, 151, 157, 178, 193, 834
Sau96I	GGNCC	1 cut(s)	953
SchI	GAGTC	2 cut(s)	77, 1074
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	5 cut(s)	203, 675, 870, 900, 969
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	2 cut(s)	794, 927
Sfr274I	CTCGAG	1 cut(s)	501
SlaI	CTCGAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	2 cut(s)	643, 768
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
SseBI	AGGCCT	2 cut(s)	189, 591
SsiI	CCGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	4 cut(s)	125, 470, 617, 840
SstI	GAGCTC	1 cut(s)	969
StuI	AGGCCT	2 cut(s)	189, 591
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	3 cut(s)	277, 351, 616
TaaI	ACNGT	5 cut(s)	37, 533, 547, 564, 740
TaiI	ACGT	1 cut(s)	449
TaqI	TCGA	3 cut(s)	81, 322, 502
TasI	AATT	6 cut(s)	44, 75, 519, 569, 990, 1065
TatI	WGTACW	2 cut(s)	528, 547
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	3 cut(s)	604, 798, 931
TseFI	GTSAC	3 cut(s)	91, 599, 821
TseI	GCWGC	4 cut(s)	242, 337, 496, 727
Tsp45I	GTSAC	3 cut(s)	91, 599, 821
TspDTI	ATGAA	3 cut(s)	360, 492, 752
TspRI	CASTG	3 cut(s)	604, 798, 931
XagI	CCTNNNNNAGG	1 cut(s)	1033
XapI	RAATTY	2 cut(s)	44, 1065
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	918
XhoI	CTCGAG	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	4 cut(s)	125, 470, 617, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.