Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008662

Physical Location & Seq

Genomic Coordinates Reverse (-)

46119126 .. 46120281

Gene Structure 1156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAAGCCCTGGATCATAGTGAGGCCGAGAAGAGGGTGAAAGAATTTCTCGAATCCAAAGCTGGTGTCAAAGGAATTGTCGACTCTGGATTGACCAAGATCCCACCAATGTTCGTACACCCTCCAGAGGAGTTGCAACGAAACAACATGGATCATGATTTCCGAGTTCCAATGATTGATCTCAAGGGCCTTGATCAGAGCACCGAGAGGCGAAAAGAAGTCATCAATGAGATGAGCAAAGCAGCTGAAGCATGGGGATTCTTTCAGATAGTGAACCATGGAGTTCCACTTGAAGTTATGGAGGAGGTGCTGAAAAGTGTTCGACGATTTCACGAGCAGCCCCATGAAGCCAAGGTGGAGTGGTACTCGCGCGATTTCAAGAAGAAGGCGTTCAACTACTTCAGCAACGGAGATTTGAAGGTGTCGACTCCGGCTGGCTGGAGGGACAGTTTCTCCTGGCAGCTGCAGTTCCCAGAAGATGAAAGTAACTCTCAAGCACTGCCTCAAGTCTGCAGAAGGGAAATTGTTGAGTACGGTAAGCACATGACTCAACTACAAGAGAAGCTCTCTGAATTATTGTCCGAAGCTTTAGGTCTGAGCACTGACTACCTTTCAAGGCTAGGGTGCTTTAAGTCGACATCACTGGTTGGCCACTATTACCCGGTTTGCCCAGAGCCCCATCTAACTTTAGGTGCAAGCAAGCACTCGGACATCTCCTTTCTCACTCTGCTCCTTCAAGACAGTGTCGGTGGCCTCCAAGTGCTTCATCAAAATGTTTGGGTGGATGTGCCACCAGTGCAAGGAGCTTTGGTAGCAAATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009690 GO:0009823 GO:0009987 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0034754 GO:0042445 GO:0042447 GO:0044237 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

274

Amino Acids

31.16

Weight (kDa)

5.68

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	56 - 164	7.4e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	215 - 273	1.4e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75450 AT1G75450
fragaria_vesca	FvH4_2g39230 FvH4_2g39230 FvH4_2g39230
malus_domestica	MD08G1023900.v1.1 MD15G1021500.v1.1
prunus_persica	Prupe.1G373300_v2.0.a1
pyrus_communis	pycom08g01870 pycom15g01780
rosa_chinensis	RchiOBHm_Chr6g0301781
rosa_laevigata	RLG00000011222
rosa_multiflora	Rmu_sc0005454.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166410
rosa_rugosa	Rorug06G0309500 Rorug06G0309600 Rorug06G0309700 Rorug06G0309800
rosa_samantha	Rh6AG421500 Rh6BG428300 Rh6CG434800 Rh6DG421700
rosa_wichuraiana	Rw6G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	81, 425, 635
AccII	CGCG	2 cut(s)	370, 372
AclWI	GGATC	3 cut(s)	21, 94, 159
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	2 cut(s)	267, 385
AfaI	GTAC	3 cut(s)	117, 365, 533
AfiI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
AgsI	TTSAA	6 cut(s)	293, 379, 394, 418, 615, 737
AjnI	CCWGG	2 cut(s)	9, 455
AluBI	AGCT	6 cut(s)	62, 245, 463, 565, 587, 806
AluI	AGCT	6 cut(s)	62, 245, 463, 565, 587, 806
Alw21I	GWGCWC	2 cut(s)	203, 602
AlwI	GGATC	3 cut(s)	21, 94, 159
AoxI	GGCC	4 cut(s)	24, 187, 649, 751
ApeKI	GCWGC	4 cut(s)	242, 337, 460, 463
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 63, 83, 95
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	662
AsuHPI	GGTGA	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	678
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	203, 602
BbvI	GCAGC	4 cut(s)	254, 349, 450, 472
BccI	CCATC	1 cut(s)	687
BciT130I	CCWGG	2 cut(s)	11, 457
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	662
BfaI	CTAG	2 cut(s)	620, 823
BfmI	CTRYAG	2 cut(s)	464, 511
BisI	GCNGC	4 cut(s)	243, 338, 461, 464
BlsI	GCNGC	4 cut(s)	244, 339, 462, 465
Bme1390I	CCNGG	3 cut(s)	11, 457, 662
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	11, 457, 662
BplI	GAGNNNNNCTC	4 cut(s)	350, 382, 551, 583
BpmI	CTGGAG	2 cut(s)	108, 460
BpuEI	CTTGAG	3 cut(s)	167, 477, 489
BpuMI	CCSGG	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	9, 277, 351
BsaXI	ACNNNNNCTCC	6 cut(s)	433, 437, 463, 467, 795, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 127, 800
Bse1I	ACTGG	2 cut(s)	648, 794
BseBI	CCWGG	2 cut(s)	11, 457
BseDI	CCNNGG	3 cut(s)	9, 277, 351
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
BseMII	CTCAG	1 cut(s)	587
BseNI	ACTGG	2 cut(s)	648, 794
BseRI	GAGGAG	2 cut(s)	143, 317
BseXI	GCAGC	4 cut(s)	254, 349, 450, 472
Bsh1236I	CGCG	2 cut(s)	370, 372
BshFI	GGCC	4 cut(s)	26, 189, 651, 753
BsiHKAI	GWGCWC	2 cut(s)	203, 602
BsiSI	CCGG	2 cut(s)	431, 662
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	33, 127, 800
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	4 cut(s)	26, 189, 651, 753
Bsp1286I	GDGCHC	3 cut(s)	203, 602, 678
Bsp143I	GATC	5 cut(s)	13, 99, 151, 178, 193
Bsp19I	CCATGG	1 cut(s)	277
BspANI	GGCC	4 cut(s)	26, 189, 651, 753
BspCNI	CTCAG	1 cut(s)	588
BspFNI	CGCG	2 cut(s)	370, 372
BspHI	TCATGA	1 cut(s)	154
BspMAI	CTGCAG	2 cut(s)	468, 515
BspPI	GGATC	3 cut(s)	21, 94, 159
BsrI	ACTGG	2 cut(s)	648, 794
BssECI	CCNNGG	3 cut(s)	9, 277, 351
BssMI	GATC	5 cut(s)	13, 99, 151, 178, 193
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	277, 351
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	11, 457
Bst4CI	ACNGT	3 cut(s)	449, 536, 743
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	436, 697, 701
BstDEI	CTNAG	1 cut(s)	596
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	370, 372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	5 cut(s)	16, 102, 154, 181, 196
BstMBI	GATC	5 cut(s)	13, 99, 151, 178, 193
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 796, 812
BstNI	CCWGG	2 cut(s)	11, 457
BstSCI	CCNGG	3 cut(s)	9, 455, 660
BstSFI	CTRYAG	2 cut(s)	464, 511
BstUI	CGCG	2 cut(s)	370, 372
BstV1I	GCAGC	4 cut(s)	254, 349, 450, 472
BstX2I	RGATCY	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	4 cut(s)	26, 189, 651, 753
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	790
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	5 cut(s)	497, 600, 641, 748, 801
Cac8I	GCNNGC	3 cut(s)	436, 697, 701
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	116, 364, 532
CviAII	CATG	6 cut(s)	148, 155, 252, 278, 344, 544
CviQI	GTAC	3 cut(s)	116, 364, 532
DdeI	CTNAG	1 cut(s)	596
DpnI	GATC	5 cut(s)	15, 101, 153, 180, 195
DpnII	GATC	5 cut(s)	13, 99, 151, 178, 193
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	277, 351
Eco24I	GRGCYC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	267, 385
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	9, 455
EcoT14I	CCWWGG	2 cut(s)	277, 351
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	2 cut(s)	277, 351
FaeI	CATG	6 cut(s)	151, 158, 255, 281, 347, 547
FaiI	YATR	8 cut(s)	18, 149, 156, 253, 279, 299, 345, 545
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	6 cut(s)	147, 154, 251, 277, 343, 543
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	3 cut(s)	81, 425, 635
Fnu4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	4 cut(s)	243, 338, 461, 464
FspBI	CTAG	2 cut(s)	620, 823
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	4 cut(s)	243, 338, 461, 464
GsuI	CTGGAG	2 cut(s)	108, 460
HaeIII	GGCC	4 cut(s)	26, 189, 651, 753
HapII	CCGG	2 cut(s)	431, 662
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	6 cut(s)	151, 158, 255, 281, 347, 547
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	3 cut(s)	82, 426, 636
HindII	GTYRAC	3 cut(s)	82, 426, 636
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	5 cut(s)	53, 83, 258, 427, 547
HpaII	CCGG	2 cut(s)	431, 662
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	5 cut(s)	82, 118, 274, 426, 636
Hpy188I	TCNGA	7 cut(s)	164, 198, 267, 571, 583, 597, 709
Hpy188III	TCNNGA	7 cut(s)	50, 87, 125, 155, 332, 379, 737
Hpy8I	GTNNAC	5 cut(s)	82, 118, 274, 426, 636
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	4 cut(s)	379, 412, 510, 743
HpyCH4III	ACNGT	3 cut(s)	449, 536, 743
HpyCH4V	TGCA	5 cut(s)	136, 466, 513, 695, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 796, 812
HpyF3I	CTNAG	1 cut(s)	596
Hsp92II	CATG	6 cut(s)	151, 158, 255, 281, 347, 547
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	13, 99, 151, 178, 193
LmnI	GCTCC	2 cut(s)	735, 803
Lsp1109I	GCAGC	4 cut(s)	254, 349, 450, 472
MaeI	CTAG	2 cut(s)	620, 823
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	5 cut(s)	15, 101, 153, 180, 195
MboI	GATC	5 cut(s)	13, 99, 151, 178, 193
MboII	GAAGA	3 cut(s)	43, 394, 488
MflI	RGATCY	1 cut(s)	99
MhlI	GDGCHC	3 cut(s)	203, 602, 678
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	4 cut(s)	44, 75, 522, 572
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	3 cut(s)	77, 421, 541
Mox20I	TGGCCA	1 cut(s)	651
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	771
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	245, 463
MspI	CCGG	2 cut(s)	431, 662
MspR9I	CCNGG	3 cut(s)	11, 457, 662
MvaI	CCWGG	2 cut(s)	11, 457
MvnI	CGCG	2 cut(s)	370, 372
MwoI	GCNNNNNNNGC	3 cut(s)	248, 796, 812
NciI	CCSGG	1 cut(s)	662
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	5 cut(s)	13, 99, 151, 178, 193
NlaIII	CATG	6 cut(s)	151, 158, 255, 281, 347, 547
NmeAIII	GCCGAG	1 cut(s)	52
PagI	TCATGA	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	53, 258
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	4 cut(s)	244, 339, 462, 465
PleI	GAGTC	3 cut(s)	77, 421, 541
PpsI	GAGTC	3 cut(s)	77, 421, 541
Psp6I	CCWGG	2 cut(s)	9, 455
PspGI	CCWGG	2 cut(s)	9, 455
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	2 cut(s)	468, 515
PsuI	RGATCY	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	2 cut(s)	245, 463
RsaI	GTAC	3 cut(s)	117, 365, 533
RsaNI	GTAC	3 cut(s)	116, 364, 532
RseI	CAYNNNNRTG	1 cut(s)	771
SalI	GTCGAC	3 cut(s)	80, 424, 634
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	4 cut(s)	243, 338, 461, 464
Sau3AI	GATC	5 cut(s)	13, 99, 151, 178, 193
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	77, 421, 541
ScrFI	CCNGG	3 cut(s)	11, 457, 662
SduI	GDGCHC	3 cut(s)	203, 602, 678
SfcI	CTRYAG	2 cut(s)	464, 511
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	3 cut(s)	182, 492, 504
SmoI	CTYRAG	3 cut(s)	182, 492, 504
Sse9I	AATT	4 cut(s)	44, 75, 522, 572
SspMI	CTAG	2 cut(s)	620, 823
StyD4I	CCNGG	3 cut(s)	9, 455, 660
StyI	CCWWGG	2 cut(s)	277, 351
TaaI	ACNGT	3 cut(s)	449, 536, 743
TaqI	TCGA	5 cut(s)	51, 81, 322, 425, 635
TasI	AATT	4 cut(s)	44, 75, 522, 572
TfiI	GAWTC	2 cut(s)	53, 258
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	5 cut(s)	504, 607, 648, 748, 801
TseI	GCWGC	4 cut(s)	242, 337, 460, 463
TspDTI	ATGAA	3 cut(s)	360, 495, 755
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	5 cut(s)	504, 607, 648, 748, 801
Tth111I	GACNNNGTC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	3 cut(s)	81, 425, 635
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	2 cut(s)	620, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.