Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008662

Physical Location & Seq

Genomic Coordinates Reverse (-)

46118854 .. 46119117

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCAGATCACTAGTAATGACAAGTTGAAGAGTGTGGAGCACAGAGTTTTGGCAACCAGGACCGCGGAACCCCGAACATCAGTTGCATGTTTTTTCAGTGCAGAAGACAAGCTCAAACCATTTGGGCCGTTCAAGGAGCTTGTTTCCGAAACCCATCCCCCAATTTACAGAGACAATATCAGTTTTGGAGAATACATGGCATATTATAGGCTCAAGGGGCAAGATGGAAACTCTTCTATGCCTCTGTTTAGACTCGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009690 GO:0009823 GO:0009987 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0034754 GO:0042445 GO:0042447 GO:0044237 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

87

Amino Acids

10.0

Weight (kDa)

8.82

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75450 AT1G75450
fragaria_vesca	FvH4_2g39230 FvH4_2g39230 FvH4_2g39230
malus_domestica	MD08G1023900.v1.1 MD15G1021500.v1.1
prunus_persica	Prupe.1G373300_v2.0.a1
pyrus_communis	pycom08g01870 pycom15g01780
rosa_chinensis	RchiOBHm_Chr6g0301781
rosa_laevigata	RLG00000011222
rosa_multiflora	Rmu_sc0005454.1_g000020
rosa_roxburghii	Rroxscaffold_7G00166410
rosa_rugosa	Rorug06G0309500 Rorug06G0309600 Rorug06G0309700 Rorug06G0309800
rosa_samantha	Rh6AG421500 Rh6BG428300 Rh6CG434800 Rh6DG421700
rosa_wichuraiana	Rw6G036500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 65
AgsI	TTSAA	2 cut(s)	28, 133
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	112, 139
AluI	AGCT	2 cut(s)	112, 139
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	60, 125
AvaII	GGWCC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	2 cut(s)	162, 218
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 125
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	63, 65
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	23, 238
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	60, 125
Cfr42I	CCGCGG	1 cut(s)	66
CviAII	CATG	2 cut(s)	87, 196
CviJI	RGCY	4 cut(s)	112, 127, 139, 211
CviKI_1	RGCY	4 cut(s)	112, 127, 139, 211
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	23, 238
EarI	CTCTTC	2 cut(s)	23, 238
Eco47I	GGWCC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	90, 199
FaiI	YATR	5 cut(s)	88, 197, 202, 207, 239
FatI	CATG	2 cut(s)	86, 195
FokI	GGATG	1 cut(s)	141
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	127
Hin1II	CATG	2 cut(s)	90, 199
HinfI	GANTC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	4, 86, 101, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	90, 199
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	37, 136
LpnPI	CCDG	2 cut(s)	43, 70
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	3 cut(s)	40, 116, 225
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	1 cut(s)	262
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	2 cut(s)	90, 199
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	60, 125
SacII	CCGCGG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	2 cut(s)	60, 125
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	2 cut(s)	114, 141
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	63, 65
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	56
TasI	AATT	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TscAI	CASTG	1 cut(s)	103
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	60
XceI	RCATGY	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.