Rorug06G0450400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001868
Physical Location & Seq
Forward (+)
57997302 .. 57999991
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0450400.1

Sequence Viewer

Length: 675 bp
ATGGTATTCTGGGTGTTTGGATATGGTTCACTTGTGTGGAACCCTGGTTTCGAATACGACGAGAAAGTGATAGGTTTCATCAAGGACTACAGGCGTGTATTCGATCTTGCTTGCATTGATCATCGAGGTACGCCTGAGCACCCTGCAAGAACTTGCACATTGGAACACCAAGAAGGGGCTATTTGCTGGGGTGCTGCTTATTCTGTGCGTGGCGACCCTGAAAGGGAAAGACTGGCTATGGAGTACTTGGAAAGGAGAGAATGTGAATATGATGCAAAGACTCTTGTGAACTTTTACAAGGAAGGGGACTTCTCTGATGAGCCTTCTTTGACAGGAGTCATTGTTTTCACATCTACTCCAGACAAAGAATCAAACAAATATTACCTGGGTCCTGCTCCATTGGAGGATATGGCAAGCCAAATTGCGACTGCTTCTGGGCCATGCGGGAACAACAGAGACTACTTATTTTTGCTGGAAAAAGCTATGTTTGATATTGGCCATGAAGAAGACTATGTGATAGAGCTTGCAAATGAGGTGAGGAATGTACTTGGAATTGTTGGGAAAGGGATTCCAAGGGATAAGAAGTTGACAGGACCAACCCACATCCCACTCAAGTCCCACATTCCAACCATTCAATTGCATCCCCTTCCGGAAGCCATCGCCATGGACTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.32

Weight (kDa)

4.96

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ChaC PF04752 3 - 181 1.4e-44 ChaC-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 496
AfaI GTAC 3 cut(s) 130, 245, 546
AfiI CCNNNNNNNGG 2 cut(s) 175, 223
AgsI TTSAA 1 cut(s) 635
AjnI CCWGG 2 cut(s) 43, 384
AleI CACNNNNGTG 1 cut(s) 34
AluBI AGCT 2 cut(s) 482, 523
AluI AGCT 2 cut(s) 482, 523
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 649
AoxI GGCC 2 cut(s) 437, 496
ApeKI GCWGC 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 389, 437, 593
AsuHPI GGTGA 1 cut(s) 547
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 389, 593
BalI TGGCCA 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 181
BccI CCATC 1 cut(s) 665
BciT130I CCWGG 2 cut(s) 45, 386
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 88
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 45, 386
Bme18I GGWCC 2 cut(s) 389, 593
BmgT120I GGNCC 3 cut(s) 389, 437, 593
BmiI GGNNCC 2 cut(s) 41, 390
BmrFI CCNGG 2 cut(s) 45, 386
BmsI GCATC 2 cut(s) 262, 649
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 43, 385, 572, 663
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 6 cut(s) 247, 277, 327, 340, 357, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 223
Bse1I ACTGG 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 649
BseBI CCWGG 2 cut(s) 45, 386
BseDI CCNNGG 4 cut(s) 43, 385, 572, 663
BseGI GGATG 2 cut(s) 603, 640
BseLI CCNNNNNNNGG 2 cut(s) 175, 223
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 186
BshFI GGCC 2 cut(s) 439, 498
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 2 cut(s) 320, 601
BslI CCNNNNNNNGG 2 cut(s) 175, 223
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 320, 601
BsnI GGCC 2 cut(s) 439, 498
Bsp119I TTCGAA 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 2 cut(s) 103, 118
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 1 cut(s) 444
BspANI GGCC 2 cut(s) 439, 498
BspCNI CTCAG 1 cut(s) 127
BspEI TCCGGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 41, 390
BspT104I TTCGAA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 4 cut(s) 43, 385, 572, 663
BssMI GATC 2 cut(s) 103, 118
BssT1I CCWWGG 2 cut(s) 572, 663
Bst2UI CCWGG 2 cut(s) 45, 386
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 112, 415, 525
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 603, 640
BstKTI GATC 2 cut(s) 106, 121
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 2 cut(s) 103, 118
BstNI CCWGG 2 cut(s) 45, 386
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 43, 384
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 664
BsuRI GGCC 2 cut(s) 439, 498
BtgI CCRYGG 1 cut(s) 663
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 603, 640
Cac8I GCNNGC 3 cut(s) 112, 415, 525
Cfr13I GGNCC 3 cut(s) 389, 437, 593
Csp6I GTAC 3 cut(s) 129, 244, 545
CviAII CATG 3 cut(s) 441, 500, 664
CviJI RGCY 9 cut(s) 179, 236, 322, 417, 439, 482, 498, 523, 656
CviKI_1 RGCY 9 cut(s) 179, 236, 322, 417, 439, 482, 498, 523, 656
CviQI GTAC 3 cut(s) 129, 244, 545
DdeI CTNAG 1 cut(s) 135
DpnI GATC 2 cut(s) 105, 120
DpnII GATC 2 cut(s) 103, 118
EaeI YGGCCR 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 572, 663
Eco47I GGWCC 2 cut(s) 389, 593
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 43, 384
EcoT14I CCWWGG 2 cut(s) 572, 663
ErhI CCWWGG 2 cut(s) 572, 663
FaeI CATG 3 cut(s) 444, 503, 667
FaiI YATR 9 cut(s) 24, 239, 270, 410, 442, 485, 501, 513, 665
FaqI GGGAC 2 cut(s) 320, 601
FatI CATG 3 cut(s) 440, 499, 663
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 590, 627
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 2 cut(s) 439, 498
HapII CCGG 1 cut(s) 650
Hin1II CATG 3 cut(s) 444, 503, 667
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 5 cut(s) 280, 336, 368, 568, 668
HpaII CCGG 1 cut(s) 650
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 3 cut(s) 29, 289, 588
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 359, 650
Hpy8I GTNNAC 3 cut(s) 29, 289, 588
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 167, 296, 333, 656
HpyCH4V TGCA 6 cut(s) 114, 146, 156, 275, 527, 640
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 3 cut(s) 444, 503, 667
Kpn2I TCCGGA 1 cut(s) 649
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 103, 118
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 2 cut(s) 262, 649
MalI GATC 2 cut(s) 105, 120
MboI GATC 2 cut(s) 103, 118
MboII GAAGA 2 cut(s) 515, 518
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 3 cut(s) 420, 552, 635
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 3 cut(s) 274, 345, 662
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 4 cut(s) 119, 397, 526, 531
Mox20I TGGCCA 1 cut(s) 498
MroI TCCGGA 1 cut(s) 649
MscI TGGCCA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 34, 662
Msp20I TGGCCA 1 cut(s) 498
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 2 cut(s) 45, 386
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 2 cut(s) 45, 386
NcoI CCATGG 1 cut(s) 663
NdeII GATC 2 cut(s) 103, 118
NlaIII CATG 3 cut(s) 444, 503, 667
NlaIV GGNNCC 2 cut(s) 41, 390
NspV TTCGAA 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 368, 568
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 3 cut(s) 274, 344, 662
PpsI GAGTC 3 cut(s) 274, 344, 662
PpuMI RGGWCCY 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 43, 384
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 2 cut(s) 43, 384
PspN4I GGNNCC 2 cut(s) 41, 390
PspPI GGNCC 3 cut(s) 389, 437, 593
PspPPI RGGWCCY 1 cut(s) 389
RsaI GTAC 3 cut(s) 130, 245, 546
RsaNI GTAC 3 cut(s) 129, 244, 545
RseI CAYNNNNRTG 2 cut(s) 34, 662
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 103, 118
Sau96I GGNCC 3 cut(s) 389, 437, 593
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 3 cut(s) 274, 345, 662
ScrFI CCNGG 2 cut(s) 45, 386
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 76, 130, 387, 484, 525, 537
SfaNI GCATC 2 cut(s) 262, 649
SfcI CTRYAG 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 2 cut(s) 389, 593
SmiMI CAYNNNNRTG 2 cut(s) 34, 662
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
Sse9I AATT 3 cut(s) 420, 552, 635
SsiI CCGC 1 cut(s) 444
SspI AATATT 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 43, 384
StyI CCWWGG 2 cut(s) 572, 663
TaqI TCGA 3 cut(s) 51, 102, 124
TasI AATT 3 cut(s) 420, 552, 635
TatI WGTACW 2 cut(s) 243, 544
TfiI GAWTC 2 cut(s) 368, 568
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 67, 516
VpaK11BI GGWCC 2 cut(s) 389, 593
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.