Rorug06G0450500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001868
Physical Location & Seq
Forward (+)
58003205 .. 58005253
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0450500.1

Sequence Viewer

Length: 711 bp
ATGGACGATATGAACCTCAACGCCCCTCACTCCATGGGCACCACCATCATCGGCGTCACCTACGACGGCGGCGTCGTCCTCGGCGCTGACTCCCGAACCTCCACTGGTGTCTATGTTGCGAATCGGTGCTCGGATAAAATCACTCAGCTCACGGATAATGTCTACGTCTGTCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTTTCCGACTATGTGAGGCACTTTCTTCATCAGCACACCATTCAGCTAGGGCAGCCTGCTACTGTCAAAGTTGCTGCTAATCTCATCAGGCTACTGTCCTATGGCAACAAGAATATGTTGCAAACTGGGTTGATTGTTGGAGGCTGGGACAAGTACGAAGGGGGAAAGATTTATGGAGTTCCTCTTGGCGGCACAGTAATTGAGGCGCCATTTGCCATTGGAGGTTCTGGCTCCAGTTACTTGTATGGATTCTTTGATCAAGCATGGAGAGAAGGAATGACCAAGGACGAAGCGGAGAAGTTGGTTGTGAAGGCAGTTTCCCTAGCCATTGCACGAGATGGAGCCAGTGGTGGTGTTGTCCGCACTGTTGTGATTAATTCTGAGGGAGTTAAAAGAAATTTCTACGCTGGCGACACACTGCCACTGTGGCACGAGGAGTTGGAGCCCCAGAATTCTCTGCTGGACATCTTGGCTGCTGGTGGTGATGGCCCTGCCCCTATGAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.1

Weight (kDa)

5.21

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 12 - 192 1.3e-49 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB1I GGYRCC 2 cut(s) 38, 406
AccI GTMKAC 1 cut(s) 162
AciI CCGC 4 cut(s) 69, 390, 494, 562
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 2 cut(s) 598, 652
AcyI GRCGYC 3 cut(s) 54, 72, 407
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 389
AleI CACNNNNGTG 1 cut(s) 569
AluBI AGCT 2 cut(s) 148, 247
AluI AGCT 2 cut(s) 148, 247
Alw21I GWGCWC 1 cut(s) 131
AlwI GGATC 1 cut(s) 187
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 4 cut(s) 185, 253, 275, 674
ApoI RAATTY 2 cut(s) 598, 652
AseI ATTAAT 1 cut(s) 576
AspLEI GCGC 2 cut(s) 86, 409
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 2 cut(s) 49, 695
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 2 cut(s) 38, 406
BanII GRGCYC 1 cut(s) 648
BauI CACGAG 2 cut(s) 534, 632
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 172, 262, 265, 661
BccI CCATC 3 cut(s) 53, 533, 680
BceAI ACGGC 1 cut(s) 82
BclI TGATCA 1 cut(s) 457
BfaI CTAG 2 cut(s) 248, 524
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 2 cut(s) 87, 410
BglI GCCNNNNNGGC 1 cut(s) 628
BisI GCNGC 6 cut(s) 70, 186, 254, 276, 391, 675
BlsI GCNGC 6 cut(s) 71, 187, 255, 277, 392, 676
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 5 cut(s) 40, 408, 433, 544, 645
BmrI ACTGGG 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 418
BsaHI GRCGYC 3 cut(s) 54, 72, 407
BsaJI CCNNGG 3 cut(s) 33, 79, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 4 cut(s) 109, 331, 435, 546
Bse3DI GCAATG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 33, 79, 483
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 3 cut(s) 158, 209, 573
BseNI ACTGG 4 cut(s) 109, 331, 435, 546
BseRI GAGGAG 1 cut(s) 650
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 4 cut(s) 172, 262, 265, 661
BseYI CCCAGC 1 cut(s) 345
BshFI GGCC 1 cut(s) 690
BshNI GGYRCC 2 cut(s) 38, 406
BsiHKAI GWGCWC 1 cut(s) 131
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 690
Bsp1286I GDGCHC 3 cut(s) 41, 131, 648
Bsp143I GATC 2 cut(s) 179, 457
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 4 cut(s) 69, 390, 494, 562
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 3 cut(s) 157, 208, 574
BspLI GGNNCC 5 cut(s) 40, 408, 433, 544, 645
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 38, 406
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 4 cut(s) 109, 331, 435, 546
BssECI CCNNGG 3 cut(s) 33, 79, 483
BssMI GATC 2 cut(s) 179, 457
BssNI GRCGYC 3 cut(s) 54, 72, 407
BssSI CACGAG 2 cut(s) 534, 632
BssT1I CCWWGG 2 cut(s) 33, 483
Bst2BI CACGAG 2 cut(s) 534, 632
Bst4CI ACNGT 5 cut(s) 265, 297, 397, 568, 627
BstACI GRCGYC 3 cut(s) 54, 72, 407
BstC8I GCNNGC 2 cut(s) 258, 610
BstDEI CTNAG 3 cut(s) 144, 195, 582
BstDSI CCRYGG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 87, 410
BstHHI GCGC 2 cut(s) 86, 409
BstKTI GATC 2 cut(s) 182, 460
BstMBI GATC 2 cut(s) 179, 457
BstMWI GCNNNNNNNGC 3 cut(s) 253, 413, 628
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 4 cut(s) 172, 262, 265, 661
BsuRI GGCC 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 617
BtsIMutI CAGTG 5 cut(s) 102, 553, 564, 617, 623
Cac8I GCNNGC 2 cut(s) 258, 610
CfoI GCGC 2 cut(s) 86, 409
Cfr13I GGNCC 1 cut(s) 689
CseI GACGC 2 cut(s) 43, 61
Csp6I GTAC 1 cut(s) 355
CviAII CATG 2 cut(s) 34, 465
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 3 cut(s) 144, 195, 582
DinI GGCGCC 1 cut(s) 408
DpnI GATC 2 cut(s) 181, 459
DpnII GATC 2 cut(s) 179, 457
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 33, 483
Eco24I GRGCYC 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 33, 483
EcoT38I GRGCYC 1 cut(s) 648
EgeI GGCGCC 1 cut(s) 408
EheI GGCGCC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 33, 483
FaeI CATG 2 cut(s) 37, 468
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 33, 464
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 6 cut(s) 70, 186, 254, 276, 391, 675
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 6 cut(s) 70, 186, 254, 276, 391, 675
FspBI CTAG 2 cut(s) 248, 524
GlaI GCGC 2 cut(s) 85, 408
GluI GCNGC 6 cut(s) 70, 186, 254, 276, 391, 675
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 418
HaeII RGCGCY 2 cut(s) 87, 410
HaeIII GGCC 1 cut(s) 690
HgaI GACGC 2 cut(s) 43, 61
HhaI GCGC 2 cut(s) 86, 409
Hin1I GRCGYC 3 cut(s) 54, 72, 407
Hin1II CATG 2 cut(s) 37, 468
Hin6I GCGC 2 cut(s) 84, 407
HinP1I GCGC 2 cut(s) 84, 407
HinfI GANTC 4 cut(s) 89, 121, 191, 450
HphI GGTGA 2 cut(s) 49, 695
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 133, 208, 583
Hpy188III TCNNGA 2 cut(s) 93, 177
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 2 cut(s) 68, 77
HpyAV CCTTC 3 cut(s) 353, 467, 505
HpyCH4III ACNGT 5 cut(s) 265, 297, 397, 568, 627
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 188, 322, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 253, 413, 628
HpyF3I CTNAG 3 cut(s) 144, 195, 582
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 3 cut(s) 54, 72, 407
Hsp92II CATG 2 cut(s) 37, 468
HspAI GCGC 2 cut(s) 84, 407
KasI GGCGCC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 2 cut(s) 179, 457
LmnI GCTCC 3 cut(s) 437, 542, 643
Lsp1109I GCAGC 4 cut(s) 172, 262, 265, 661
MaeI CTAG 2 cut(s) 248, 524
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 55, 437
MalI GATC 2 cut(s) 181, 459
MboI GATC 2 cut(s) 179, 457
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 3 cut(s) 41, 131, 648
MluCI AATT 4 cut(s) 399, 577, 598, 652
Mly113I GGCGCC 1 cut(s) 407
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 231, 319, 621
MseI TTAA 2 cut(s) 576, 591
MslI CAYNNNNRTG 1 cut(s) 569
MwoI GCNNNNNNNGC 3 cut(s) 253, 413, 628
NarI GGCGCC 1 cut(s) 407
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 179, 457
NlaIII CATG 2 cut(s) 37, 468
NlaIV GGNNCC 5 cut(s) 40, 408, 433, 544, 645
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 55
OliI CACNNNNGTG 1 cut(s) 569
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 72
PfeI GAWTC 3 cut(s) 121, 191, 450
PkrI GCNGC 6 cut(s) 71, 187, 255, 277, 392, 676
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 83
PshBI ATTAAT 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 345
PspN4I GGNNCC 5 cut(s) 40, 408, 433, 544, 645
PspPI GGNCC 1 cut(s) 689
PstI CTGCAG 1 cut(s) 190
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 2 cut(s) 576, 591
SatI GCNGC 6 cut(s) 70, 186, 254, 276, 391, 675
Sau3AI GATC 2 cut(s) 179, 457
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 3 cut(s) 41, 131, 648
SetI ASST 8 cut(s) 18, 62, 101, 150, 168, 201, 249, 427
SfcI CTRYAG 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 4 cut(s) 399, 577, 598, 652
SsiI CCGC 4 cut(s) 69, 390, 494, 562
SspDI GGCGCC 1 cut(s) 406
SspMI CTAG 2 cut(s) 248, 524
StyI CCWWGG 2 cut(s) 33, 483
TaaI ACNGT 5 cut(s) 265, 297, 397, 568, 627
TaiI ACGT 1 cut(s) 168
TasI AATT 4 cut(s) 399, 577, 598, 652
TauI GCSGC 2 cut(s) 72, 393
TfiI GAWTC 3 cut(s) 121, 191, 450
Tru1I TTAA 2 cut(s) 576, 591
Tru9I TTAA 2 cut(s) 576, 591
TscAI CASTG 5 cut(s) 109, 553, 571, 624, 630
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 4 cut(s) 185, 253, 275, 674
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 26, 218
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 5 cut(s) 109, 553, 571, 624, 630
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 2 cut(s) 598, 652
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 248, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.