Rorug07G0038300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
2702405 .. 2703421
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0038300.1

Sequence Viewer

Length: 1017 bp
ATGGCCAAAATCCAAAGCTCACCAGATCTGCCATGGACCGTCAGCCTTTTCATCTCCGCCGTTTCCTTCGCAGTCGACACCTCTTGCCGCTCAAACTTCACCGTCAACCGTCGCCTCTGGAACTTGCTCGATTACAAACCCTCTCCCTTAACAAAACCTCACAGAAACCTCAAGAGCTCCGACGTCGTCGTCGTCGGCGACGGCCCTTCCCGCAACCTCTGGTTCCGCCTATACACTCCCACCGCCGCAACCACCAAGAAGCTCCCCATCATCGTCTTCTTTCACGGCGGCGGGTTCGCCTTCATGTCCGCCAGTTCAAAACTCTACGACGATTTTTGTCAACGCCTCGCTCGGGAGCTCCCCGCCGTCGTCGTCTCCGTCAACTACCGCCTCTCGCCGGAGCATCGATATCCCTGCCAGTACGACGACGGATTCGACGTCCTCAAGTTCATCGACGGCAGCGGCAGCAGCAGCAGCTGCTTGTTCGAGGGCGCCAATCTCGGACAGTGCTTTCTGGCCGGGGACAGCGCCGGCGGGAACATAGCGCACCACGTGGCGATCAGAGCCAGCGGGCACGAGTTCCGGCAGGTAAAGGTGGTGGGAATGTTGGCGATTCAGCCGTTTTTCGGCGGAGAAGAGCGGACGGAATCGGAGACGAGACTGAAAAATATGCCGCTGGTGAACATAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTGCCGGAGGGGTCGGATCGGGACCATCCGGTGGCGAATGTGTTCGGGCCGAACGCGGTGGATATATCGGGGGTGGATTTTCCGGCGACGGTTGTGTTTGTTGGGGGCTTGGATCAGTTGCAAGATTGGCAGAAGAGGTACTACGAGGGATTGAAAAAACGCGGGAAACAAGCGGAGCTGGTGGTGTTTCCGAATGCCATTCACACTTTCTATGCTTATCCCGAGTTGGATGACTCTTCTGTGTTTATTCACAAAGTCAGGGATTTCGTACAAGCGCATGCAACTGAAACTCAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

338

Amino Acids

37.79

Weight (kDa)

6.83

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 76 - 132 4.6e-09 Carboxylesterase family
BD-FAE PF20434 77 - 194 1.3e-10 BD-FAE
Abhydrolase_3 PF07859 91 - 310 4.5e-58 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 2 cut(s) 186, 441
Acc36I ACCTGC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 491
AccB7I CCANNNNNTGG 1 cut(s) 748
AccBSI CCGCTC 3 cut(s) 90, 640, 691
AccI GTMKAC 1 cut(s) 75
AccII CGCG 2 cut(s) 773, 879
AclWI GGATC 2 cut(s) 741, 837
AcoI YGGCCR 2 cut(s) 3, 516
AcvI CACGTG 1 cut(s) 553
AcyI GRCGYC 3 cut(s) 183, 438, 492
AdeI CACNNNGTG 1 cut(s) 553
AfaI GTAC 3 cut(s) 422, 857, 987
AfiI CCNNNNNNNGG 4 cut(s) 352, 397, 626, 748
AgsI TTSAA 2 cut(s) 318, 871
AluBI AGCT 6 cut(s) 18, 177, 262, 358, 477, 895
AluI AGCT 6 cut(s) 18, 177, 262, 358, 477, 895
Alw21I GWGCWC 2 cut(s) 179, 360
Alw26I GTCTC 3 cut(s) 379, 647, 652
AlwI GGATC 2 cut(s) 741, 837
AlwNI CAGNNNCTG 1 cut(s) 477
Ama87I CYCGRG 2 cut(s) 351, 938
AoxI GGCC 4 cut(s) 3, 202, 516, 764
ApeKI GCWGC 6 cut(s) 459, 465, 468, 471, 474, 477
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 4 cut(s) 494, 530, 547, 994
AspS9I GGNCC 4 cut(s) 36, 203, 739, 764
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 3 cut(s) 12, 91, 691
AvaI CYCGRG 2 cut(s) 351, 938
AvaII GGWCC 2 cut(s) 36, 739
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 179, 360
BarI GAAGNNNNNNTAC 2 cut(s) 842, 874
BauI CACGAG 1 cut(s) 575
BbrPI CACGTG 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 179, 360
BbvI GCAGC 6 cut(s) 464, 471, 477, 480, 483, 486
BccI CCATC 2 cut(s) 275, 750
BceAI ACGGC 6 cut(s) 44, 217, 301, 350, 472, 604
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BcnI CCSGG 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 379, 647, 652
BfoI RGCGCY 2 cut(s) 495, 531
BfuAI ACCTGC 1 cut(s) 577
BglII AGATCT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 520
Bme18I GGWCC 2 cut(s) 36, 739
BmeT110I CYCGRG 2 cut(s) 351, 938
BmgT120I GGNCC 4 cut(s) 36, 203, 739, 764
BmiI GGNNCC 3 cut(s) 224, 493, 740
BmrFI CCNGG 1 cut(s) 520
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 155, 428
BpuMI CCSGG 1 cut(s) 520
Bsa29I ATCGAT 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 553
BsaHI GRCGYC 3 cut(s) 183, 438, 492
BsaJI CCNNGG 2 cut(s) 32, 519
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 397, 626, 748
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 312, 418, 704
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 32, 519
BseGI GGATG 3 cut(s) 708, 742, 952
BseLI CCNNNNNNNGG 4 cut(s) 352, 397, 626, 748
BseNI ACTGG 3 cut(s) 312, 418, 704
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 6 cut(s) 464, 471, 477, 480, 483, 486
Bsh1236I CGCG 2 cut(s) 773, 879
BshFI GGCC 4 cut(s) 5, 204, 518, 766
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 406
BsiHKAI GWGCWC 2 cut(s) 179, 360
BsiHKCI CYCGRG 2 cut(s) 351, 938
BsiSI CCGG 7 cut(s) 398, 519, 531, 583, 722, 746, 800
BslFI GGGAC 2 cut(s) 536, 752
BslI CCNNNNNNNGG 4 cut(s) 352, 397, 626, 748
BsmAI GTCTC 3 cut(s) 379, 647, 652
BsmBI CGTCTC 2 cut(s) 379, 647
BsmFI GGGAC 2 cut(s) 536, 752
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 4 cut(s) 5, 204, 518, 766
BsoBI CYCGRG 2 cut(s) 351, 938
Bsp1286I GDGCHC 3 cut(s) 179, 360, 576
Bsp143I GATC 4 cut(s) 25, 558, 733, 829
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 4 cut(s) 5, 204, 518, 766
BspDI ATCGAT 1 cut(s) 406
BspFNI CGCG 2 cut(s) 773, 879
BspLI GGNNCC 3 cut(s) 224, 493, 740
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 2 cut(s) 741, 837
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 1 cut(s) 491
BsrBI CCGCTC 3 cut(s) 90, 640, 691
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 312, 418, 704
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 32, 519
BssMI GATC 4 cut(s) 25, 558, 733, 829
BssNI GRCGYC 3 cut(s) 183, 438, 492
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 575
Bst4CI ACNGT 5 cut(s) 40, 103, 110, 507, 808
Bst6I CTCTTC 3 cut(s) 630, 845, 958
BstACI GRCGYC 3 cut(s) 183, 438, 492
BstAPI GCANNNNNTGC 1 cut(s) 477
BstBAI YACGTR 1 cut(s) 553
BstC8I GCNNGC 4 cut(s) 532, 568, 572, 996
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 3 cut(s) 708, 742, 952
BstFNI CGCG 2 cut(s) 773, 879
BstH2I RGCGCY 2 cut(s) 495, 531
BstHHI GCGC 4 cut(s) 494, 530, 547, 994
BstKTI GATC 4 cut(s) 28, 561, 736, 832
BstMAI GTCTC 3 cut(s) 379, 647, 652
BstMBI GATC 4 cut(s) 25, 558, 733, 829
BstMWI GCNNNNNNNGC 8 cut(s) 210, 465, 468, 471, 474, 477, 563, 844
BstNSI RCATGY 1 cut(s) 998
BstSCI CCNGG 1 cut(s) 518
BstSLI GKGCMC 1 cut(s) 576
BstUI CGCG 2 cut(s) 773, 879
BstV1I GCAGC 6 cut(s) 464, 471, 477, 480, 483, 486
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 4 cut(s) 5, 204, 518, 766
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 708, 742, 952
BtsIMutI CAGTG 1 cut(s) 512
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 4 cut(s) 532, 568, 572, 996
CaiI CAGNNNCTG 1 cut(s) 477
CfoI GCGC 4 cut(s) 494, 530, 547, 994
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 4 cut(s) 36, 203, 739, 764
ClaI ATCGAT 1 cut(s) 406
Csp6I GTAC 3 cut(s) 421, 856, 986
CviAII CATG 3 cut(s) 33, 304, 995
CviQI GTAC 3 cut(s) 421, 856, 986
DinI GGCGCC 1 cut(s) 493
DpnI GATC 4 cut(s) 27, 560, 735, 831
DpnII GATC 4 cut(s) 25, 558, 733, 829
DraIII CACNNNGTG 1 cut(s) 553
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 2 cut(s) 3, 516
Eam1104I CTCTTC 3 cut(s) 630, 845, 958
EarI CTCTTC 3 cut(s) 630, 845, 958
EciI GGCGGA 4 cut(s) 46, 215, 298, 645
Ecl136II GAGCTC 2 cut(s) 177, 358
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 2 cut(s) 179, 360
Eco32I GATATC 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 36, 739
Eco53kI GAGCTC 2 cut(s) 177, 358
Eco72I CACGTG 1 cut(s) 553
Eco88I CYCGRG 2 cut(s) 351, 938
EcoICRI GAGCTC 2 cut(s) 177, 358
EcoRV GATATC 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 2 cut(s) 179, 360
EgeI GGCGCC 1 cut(s) 493
EheI GGCGCC 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 2 cut(s) 379, 647
FaeI CATG 3 cut(s) 36, 307, 998
FaiI YATR 9 cut(s) 34, 232, 305, 542, 671, 686, 782, 930, 996
FaqI GGGAC 2 cut(s) 536, 752
FatI CATG 3 cut(s) 32, 303, 994
FauI CCCGC 6 cut(s) 218, 284, 370, 527, 563, 872
FblI GTMKAC 1 cut(s) 75
FokI GGATG 3 cut(s) 715, 729, 959
FriOI GRGCYC 2 cut(s) 179, 360
GlaI GCGC 4 cut(s) 493, 529, 546, 993
HaeII RGCGCY 2 cut(s) 495, 531
HaeIII GGCC 4 cut(s) 5, 204, 518, 766
HapII CCGG 7 cut(s) 398, 519, 531, 583, 722, 746, 800
HhaI GCGC 4 cut(s) 494, 530, 547, 994
Hin1I GRCGYC 3 cut(s) 183, 438, 492
Hin1II CATG 3 cut(s) 36, 307, 998
Hin6I GCGC 4 cut(s) 492, 528, 545, 992
HinP1I GCGC 4 cut(s) 492, 528, 545, 992
HincII GTYRAC 4 cut(s) 76, 106, 341, 382
HindII GTYRAC 4 cut(s) 76, 106, 341, 382
HinfI GANTC 4 cut(s) 432, 613, 647, 950
HpaII CCGG 7 cut(s) 398, 519, 531, 583, 722, 746, 800
HphI GGTGA 3 cut(s) 12, 91, 691
Hpy166II GTNNAC 5 cut(s) 76, 106, 341, 382, 682
Hpy188I TCNGA 6 cut(s) 181, 503, 563, 652, 733, 909
Hpy188III TCNNGA 5 cut(s) 118, 172, 353, 737, 938
Hpy8I GTNNAC 5 cut(s) 76, 106, 341, 382, 682
HpyAV CCTTC 4 cut(s) 76, 216, 310, 703
HpyCH4III ACNGT 5 cut(s) 40, 103, 110, 507, 808
HpyCH4IV ACGT 3 cut(s) 183, 438, 552
HpyCH4V TGCA 2 cut(s) 838, 998
HpyF10VI GCNNNNNNNGC 8 cut(s) 210, 465, 468, 471, 474, 477, 563, 844
HpySE526I ACGT 3 cut(s) 183, 438, 552
Hsp92I GRCGYC 3 cut(s) 183, 438, 492
Hsp92II CATG 3 cut(s) 36, 307, 998
HspAI GCGC 4 cut(s) 492, 528, 545, 992
KasI GGCGCC 1 cut(s) 491
KroI GCCGGC 1 cut(s) 530
KroNI GCCGGC 1 cut(s) 532
Kzo9I GATC 4 cut(s) 25, 558, 733, 829
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 6 cut(s) 182, 267, 355, 363, 400, 892
Lsp1109I GCAGC 6 cut(s) 464, 471, 477, 480, 483, 486
LweI GCATC 1 cut(s) 412
MaeII ACGT 3 cut(s) 183, 438, 552
MalI GATC 4 cut(s) 27, 560, 735, 831
MbiI CCGCTC 3 cut(s) 90, 640, 691
MboI GATC 4 cut(s) 25, 558, 733, 829
MboII GAAGA 4 cut(s) 268, 647, 862, 945
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 3 cut(s) 179, 360, 576
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 492
MlyI GAGTC 1 cut(s) 944
MmeI TCCRAC 3 cut(s) 204, 711, 924
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 530
MroNI GCCGGC 1 cut(s) 530
MroXI GAANNNNTTC 1 cut(s) 758
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 149, 1015
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 4 cut(s) 462, 477, 570, 676
MspI CCGG 7 cut(s) 398, 519, 531, 583, 722, 746, 800
MspR9I CCNGG 1 cut(s) 520
Mva1269I GAATGC 1 cut(s) 916
MvnI CGCG 2 cut(s) 773, 879
MwoI GCNNNNNNNGC 8 cut(s) 210, 465, 468, 471, 474, 477, 563, 844
NaeI GCCGGC 1 cut(s) 532
NarI GGCGCC 1 cut(s) 492
NciI CCSGG 1 cut(s) 520
NcoI CCATGG 1 cut(s) 32
NdeII GATC 4 cut(s) 25, 558, 733, 829
NgoMIV GCCGGC 1 cut(s) 530
NlaIII CATG 3 cut(s) 36, 307, 998
NlaIV GGNNCC 3 cut(s) 224, 493, 740
NspI RCATGY 1 cut(s) 998
PaeI GCATGC 1 cut(s) 998
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 195, 375, 432, 435
PctI GAATGC 1 cut(s) 916
PdiI GCCGGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 3 cut(s) 432, 613, 647
PflFI GACNNNGTC 1 cut(s) 185
PflMI CCANNNNNTGG 1 cut(s) 748
PleI GAGTC 1 cut(s) 944
PluTI GGCGCC 1 cut(s) 495
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
PpsI GAGTC 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 553
Psp124BI GAGCTC 2 cut(s) 179, 360
PspCI CACGTG 1 cut(s) 553
PspN4I GGNNCC 3 cut(s) 224, 493, 740
PspPI GGNCC 4 cut(s) 36, 203, 739, 764
PstNI CAGNNNCTG 1 cut(s) 477
PsuI RGATCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 477
RsaI GTAC 3 cut(s) 422, 857, 987
RsaNI GTAC 3 cut(s) 421, 856, 986
SacI GAGCTC 2 cut(s) 179, 360
SalI GTCGAC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 2 cut(s) 149, 1015
Sau3AI GATC 4 cut(s) 25, 558, 733, 829
Sau96I GGNCC 4 cut(s) 36, 203, 739, 764
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 1 cut(s) 520
SduI GDGCHC 3 cut(s) 179, 360, 576
SfaNI GCATC 1 cut(s) 412
SfoI GGCGCC 1 cut(s) 493
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 2 cut(s) 36, 739
SmlI CTYRAG 2 cut(s) 170, 443
SmoI CTYRAG 2 cut(s) 170, 443
SphI GCATGC 1 cut(s) 998
SspDI GGCGCC 1 cut(s) 491
SstI GAGCTC 2 cut(s) 179, 360
StyD4I CCNGG 1 cut(s) 518
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 5 cut(s) 40, 103, 110, 507, 808
TaiI ACGT 3 cut(s) 186, 441, 555
TaqI TCGA 6 cut(s) 75, 129, 406, 435, 453, 486
TauI GCSGC 5 cut(s) 90, 248, 291, 465, 676
TfiI GAWTC 3 cut(s) 432, 613, 647
Tru1I TTAA 2 cut(s) 149, 1015
Tru9I TTAA 2 cut(s) 149, 1015
TscAI CASTG 1 cut(s) 512
TseI GCWGC 6 cut(s) 459, 465, 468, 471, 474, 477
TspDTI ATGAA 3 cut(s) 40, 292, 439
TspGWI ACGGA 4 cut(s) 367, 444, 659, 710
TspRI CASTG 1 cut(s) 512
Tth111I GACNNNGTC 1 cut(s) 185
Van91I CCANNNNNTGG 1 cut(s) 748
VpaK11BI GGWCC 2 cut(s) 36, 739
XceI RCATGY 1 cut(s) 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 758
ZraI GACGTC 2 cut(s) 184, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.