Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015327

Physical Location & Seq

Genomic Coordinates Forward (+)

26374581 .. 26375087

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATACACCAGTGCCTGGAGTATTGTGGAAAAGAATTTCGAGAGCACAAGTTCCAGGGAAGATACAAATTTGTGTCTGGAGTGCCTGCCAAGATCTACTGCCTACAAAAGCAACATTACTTCGTAAGGGTTATGCTGGTGACACTGATTGCCTACTATTACCTGCAAGATTTGAGGATAGAGTGCACATTTTTTGTAAGTATCCTACAACTCAAATAATCTTATCATCTCCTCCTTTTAAGCTGCAAGCTAGTCTATTGCCAAGCCTAAAGTTCACCGAATGGATGCTGCAGCAAGTTATGAACCTAAAGCAAGATACTTTCAAGAAGTTGCTTATGATACTGTGGGCACTGTGGAAGAACAGAAACAATAAAGTTTGGAATGGATGTGCACAAGCATCTACTAATATTGTGTTAAGCTCCTTGACTTGGTTGGATGAGTTTAGAAAGGCAAGACAAGATGCTGCCAAGCCAAAAAAGAATGCAAAAGAAAACATGGAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0001101 GO:0003674 GO:0005215 GO:0005381 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006855 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009642 GO:0009646 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0010015 GO:0010033 GO:0012505 GO:0015075 GO:0015238 GO:0015318 GO:0015893 GO:0017119 GO:0022603 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034220 GO:0034755 GO:0042221 GO:0042493 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0097305 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0099023 GO:0099402 GO:1901700 GO:1905392 GO:1905428

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

168

Amino Acids

19.26

Weight (kDa)

9.82

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	10 - 70	7.8e-07	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0015327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58340
fragaria_vesca	FvH4_5g33670
malus_domestica	MD08G1209800.v1.1 MD15G1393900.v1.1
pyrus_communis	pycom08g18100 pycom15g35380
rosa_chinensis	RchiOBHm_Chr7g0232641
rosa_laevigata	RLG00000001319
rosa_multiflora	Rmu_sc0005034.1_g000008
rosa_roxburghii	Rroxscaffold_3G00228070
rosa_rugosa	Rorug07G0275900
rosa_samantha	Rh7AG430200 Rh7BG403700 Rh7CG449100 Rh7DG419900
rosa_wichuraiana	Rw7G035540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	36, 69
AfiI	CCNNNNNNNGG	2 cut(s)	17, 429
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	16, 55
AluBI	AGCT	3 cut(s)	244, 251, 420
AluI	AGCT	3 cut(s)	244, 251, 420
Alw21I	GWGCWC	3 cut(s)	49, 189, 394
Alw44I	GTGCAC	2 cut(s)	185, 390
AlwNI	CAGNNNCTG	1 cut(s)	17
ApaLI	GTGCAC	2 cut(s)	185, 390
ApeKI	GCWGC	4 cut(s)	244, 289, 292, 464
ApoI	RAATTY	2 cut(s)	36, 69
AsuHPI	GGTGA	2 cut(s)	152, 268
BaeGI	GKGCMC	3 cut(s)	189, 352, 394
Bbv12I	GWGCWC	3 cut(s)	49, 189, 394
BbvI	GCAGC	4 cut(s)	231, 276, 304, 451
BciT130I	CCWGG	2 cut(s)	18, 57
BciVI	GTATCC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	4 cut(s)	245, 290, 293, 465
BlsI	GCNGC	4 cut(s)	246, 291, 294, 466
Bme1390I	CCNGG	2 cut(s)	18, 57
BmrFI	CCNGG	2 cut(s)	18, 57
BmsI	GCATC	3 cut(s)	276, 407, 451
BpmI	CTGGAG	2 cut(s)	39, 100
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 429
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	18, 57
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	3 cut(s)	291, 392, 442
BseLI	CCNNNNNNNGG	2 cut(s)	17, 429
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	3 cut(s)	189, 352, 394
BseXI	GCAGC	4 cut(s)	231, 276, 304, 451
BsiHKAI	GWGCWC	3 cut(s)	49, 189, 394
BslI	CCNNNNNNNGG	2 cut(s)	17, 429
BsmI	GAATGC	1 cut(s)	487
Bsp1286I	GDGCHC	4 cut(s)	49, 189, 352, 394
Bsp143I	GATC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	18, 57
Bst4CI	ACNGT	2 cut(s)	345, 354
BstC8I	GCNNGC	2 cut(s)	88, 249
BstF5I	GGATG	3 cut(s)	291, 392, 442
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstNI	CCWGG	2 cut(s)	18, 57
BstSCI	CCNGG	2 cut(s)	16, 55
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	3 cut(s)	189, 352, 394
BstV1I	GCAGC	4 cut(s)	231, 276, 304, 451
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	291, 392, 442
BtsIMutI	CAGTG	3 cut(s)	18, 144, 350
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	88, 249
CaiI	CAGNNNCTG	1 cut(s)	17
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	6 cut(s)	244, 251, 267, 420, 472, 503
CviKI_1	RGCY	6 cut(s)	244, 251, 267, 420, 472, 503
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	16, 55
FaeI	CATG	1 cut(s)	499
FaiI	YATR	4 cut(s)	135, 302, 338, 497
FatI	CATG	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	245, 290, 293, 465
FokI	GGATG	3 cut(s)	298, 399, 449
Fsp4HI	GCNGC	4 cut(s)	245, 290, 293, 465
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	4 cut(s)	245, 290, 293, 465
GsuI	CTGGAG	2 cut(s)	39, 100
Hin1II	CATG	1 cut(s)	499
HphI	GGTGA	2 cut(s)	152, 268
Hpy166II	GTNNAC	3 cut(s)	187, 276, 392
Hpy188III	TCNNGA	3 cut(s)	42, 79, 325
Hpy8I	GTNNAC	3 cut(s)	187, 276, 392
HpyCH4III	ACNGT	2 cut(s)	345, 354
HpyCH4V	TGCA	6 cut(s)	167, 187, 247, 292, 392, 485
Hsp92II	CATG	1 cut(s)	499
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	9 cut(s)	3, 24, 30, 42, 64, 69, 100, 123, 177
Lsp1109I	GCAGC	4 cut(s)	231, 276, 304, 451
LweI	GCATC	3 cut(s)	276, 407, 451
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	73, 370
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	4 cut(s)	49, 189, 352, 394
MluCI	AATT	2 cut(s)	36, 69
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	169, 243
MseI	TTAA	2 cut(s)	240, 416
MspR9I	CCNGG	2 cut(s)	18, 57
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	2 cut(s)	18, 57
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	140
PctI	GAATGC	1 cut(s)	487
PflMI	CCANNNNNTGG	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	246, 291, 294, 466
Psp6I	CCWGG	2 cut(s)	16, 55
PspGI	CCWGG	2 cut(s)	16, 55
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	240, 416
SatI	GCNGC	4 cut(s)	245, 290, 293, 465
Sau3AI	GATC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	18, 57
SduI	GDGCHC	4 cut(s)	49, 189, 352, 394
SetI	ASST	5 cut(s)	166, 246, 253, 309, 422
SfaNI	GCATC	3 cut(s)	276, 407, 451
SfcI	CTRYAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	36, 69
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	16, 55
TaaI	ACNGT	2 cut(s)	345, 354
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	36, 69
Tru1I	TTAA	2 cut(s)	240, 416
Tru9I	TTAA	2 cut(s)	240, 416
TscAI	CASTG	3 cut(s)	18, 151, 357
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	4 cut(s)	244, 289, 292, 464
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	17, 317
TspRI	CASTG	3 cut(s)	18, 151, 357
Van91I	CCANNNNNTGG	1 cut(s)	17
VneI	GTGCAC	2 cut(s)	185, 390
XapI	RAATTY	2 cut(s)	36, 69
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.