f-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g26000 |
| malus_domestica | MD01G1168200.v1.1 |
| prunus_persica | Prupe.2G264700_v2.0.a1 |
| pyrus_communis | pycom01g18120 |
| rosa_chinensis | RchiOBHm_Chr1g0372381 |
| rosa_laevigata | RLG00000026902 |
| rosa_multiflora | Rmu_sc0001755.1_g000005 Rmu_sc0032499.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00284990 |
| rosa_rugosa | Rorug01G0371400 |
| rosa_samantha | Rh1AG380100 Rh1BG343600 Rh1CG357100 Rh1DG374800 |
| rosa_wichuraiana | Rw1G033410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1289 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 816, 1299 |
| AccI | GTMKAC | 1 cut(s) | 473 |
| AccIII | TCCGGA | 1 cut(s) | 268 |
| AciI | CCGC | 6 cut(s) | 140, 665, 924, 983, 1367, 1465 |
| AclI | AACGTT | 2 cut(s) | 90, 498 |
| AclWI | GGATC | 5 cut(s) | 359, 396, 628, 1121, 1148 |
| AcoI | YGGCCR | 2 cut(s) | 306, 447 |
| AcsI | RAATTY | 1 cut(s) | 1234 |
| AcvI | CACGTG | 1 cut(s) | 1406 |
| AcyI | GRCGYC | 1 cut(s) | 1290 |
| AfaI | GTAC | 2 cut(s) | 644, 1513 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 259, 435, 816, 835, 1299, 1346, 1363, 1420 |
| AflIII | ACRYGT | 3 cut(s) | 81, 204, 1273 |
| AgsI | TTSAA | 3 cut(s) | 1030, 1271, 1483 |
| AjnI | CCWGG | 5 cut(s) | 449, 769, 1001, 1013, 1144 |
| AluBI | AGCT | 5 cut(s) | 517, 652, 930, 1208, 1492 |
| AluI | AGCT | 5 cut(s) | 517, 652, 930, 1208, 1492 |
| Alw21I | GWGCWC | 3 cut(s) | 519, 1053, 1494 |
| Alw26I | GTCTC | 2 cut(s) | 318, 1304 |
| Alw44I | GTGCAC | 1 cut(s) | 1049 |
| AlwI | GGATC | 5 cut(s) | 359, 396, 628, 1121, 1148 |
| Aor13HI | TCCGGA | 1 cut(s) | 268 |
| AoxI | GGCC | 4 cut(s) | 306, 447, 1440, 1519 |
| ApaLI | GTGCAC | 1 cut(s) | 1049 |
| ApeKI | GCWGC | 4 cut(s) | 301, 1303, 1452, 1455 |
| ApoI | RAATTY | 1 cut(s) | 1234 |
| AspLEI | GCGC | 2 cut(s) | 982, 1292 |
| AspS9I | GGNCC | 3 cut(s) | 766, 913, 1022 |
| AsuC2I | CCSGG | 1 cut(s) | 1341 |
| AsuHPI | GGTGA | 3 cut(s) | 274, 895, 985 |
| AsuII | TTCGAA | 1 cut(s) | 673 |
| AsuNHI | GCTAGC | 1 cut(s) | 926 |
| AvaII | GGWCC | 3 cut(s) | 766, 913, 1022 |
| AxyI | CCTNAGG | 1 cut(s) | 1523 |
| BaeGI | GKGCMC | 1 cut(s) | 1053 |
| BalI | TGGCCA | 1 cut(s) | 449 |
| BanI | GGYRCC | 1 cut(s) | 1289 |
| BanII | GRGCYC | 2 cut(s) | 519, 1494 |
| BbrPI | CACGTG | 1 cut(s) | 1406 |
| Bbv12I | GWGCWC | 3 cut(s) | 519, 1053, 1494 |
| BbvCI | CCTCAGC | 1 cut(s) | 957 |
| BbvI | GCAGC | 4 cut(s) | 288, 1290, 1464, 1467 |
| BccI | CCATC | 6 cut(s) | 206, 563, 751, 924, 1427, 1465 |
| BceAI | ACGGC | 2 cut(s) | 314, 613 |
| BciT130I | CCWGG | 5 cut(s) | 451, 771, 1003, 1015, 1146 |
| BclI | TGATCA | 1 cut(s) | 1249 |
| BcnI | CCSGG | 1 cut(s) | 1341 |
| BcoDI | GTCTC | 2 cut(s) | 318, 1304 |
| BfaI | CTAG | 6 cut(s) | 65, 681, 927, 1056, 1371, 1476 |
| BfmI | CTRYAG | 1 cut(s) | 1304 |
| BfoI | RGCGCY | 1 cut(s) | 1293 |
| BisI | GCNGC | 6 cut(s) | 302, 983, 1304, 1368, 1453, 1456 |
| BlsI | GCNGC | 6 cut(s) | 303, 984, 1305, 1369, 1454, 1457 |
| Bme1390I | CCNGG | 6 cut(s) | 451, 771, 1003, 1015, 1146, 1341 |
| Bme18I | GGWCC | 3 cut(s) | 766, 913, 1022 |
| BmgT120I | GGNCC | 3 cut(s) | 766, 913, 1022 |
| BmiI | GGNNCC | 3 cut(s) | 768, 1291, 1384 |
| BmrFI | CCNGG | 6 cut(s) | 451, 771, 1003, 1015, 1146, 1341 |
| BmsI | GCATC | 2 cut(s) | 123, 320 |
| BmtI | GCTAGC | 1 cut(s) | 930 |
| BpmI | CTGGAG | 2 cut(s) | 281, 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 957 |
| Bpu14I | TTCGAA | 1 cut(s) | 673 |
| BpuEI | CTTGAG | 1 cut(s) | 788 |
| BpuMI | CCSGG | 1 cut(s) | 1341 |
| BsaAI | YACGTR | 1 cut(s) | 1406 |
| BsaHI | GRCGYC | 1 cut(s) | 1290 |
| BsaJI | CCNNGG | 4 cut(s) | 344, 769, 1145, 1285 |
| BsaWI | WCCGGW | 2 cut(s) | 268, 1385 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1301, 1331 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 259, 435, 816, 835, 1299, 1346, 1363, 1420 |
| Bse118I | RCCGGY | 1 cut(s) | 304 |
| Bse21I | CCTNAGG | 1 cut(s) | 1523 |
| BseAI | TCCGGA | 1 cut(s) | 268 |
| BseBI | CCWGG | 5 cut(s) | 451, 771, 1003, 1015, 1146 |
| BseDI | CCNNGG | 4 cut(s) | 344, 769, 1145, 1285 |
| BseGI | GGATG | 6 cut(s) | 34, 288, 765, 1281, 1435, 1473 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 259, 435, 816, 835, 1299, 1346, 1363, 1420 |
| BseMII | CTCAG | 5 cut(s) | 870, 948, 1188, 1353, 1537 |
| BseRI | GAGGAG | 3 cut(s) | 527, 848, 974 |
| BseSI | GKGCMC | 1 cut(s) | 1053 |
| BseXI | GCAGC | 4 cut(s) | 288, 1290, 1464, 1467 |
| BseYI | CCCAGC | 1 cut(s) | 656 |
| BshFI | GGCC | 4 cut(s) | 308, 449, 1442, 1521 |
| BshNI | GGYRCC | 1 cut(s) | 1289 |
| BsiHKAI | GWGCWC | 3 cut(s) | 519, 1053, 1494 |
| BsiSI | CCGG | 4 cut(s) | 269, 305, 1340, 1386 |
| BslFI | GGGAC | 2 cut(s) | 362, 752 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 259, 435, 816, 835, 1299, 1346, 1363, 1420 |
| BsmAI | GTCTC | 2 cut(s) | 318, 1304 |
| BsmFI | GGGAC | 2 cut(s) | 362, 752 |
| BsmI | GAATGC | 1 cut(s) | 1534 |
| BsnI | GGCC | 4 cut(s) | 308, 449, 1442, 1521 |
| Bsp119I | TTCGAA | 1 cut(s) | 673 |
| Bsp1286I | GDGCHC | 3 cut(s) | 519, 1053, 1494 |
| Bsp13I | TCCGGA | 1 cut(s) | 268 |
| Bsp143I | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| Bsp19I | CCATGG | 1 cut(s) | 344 |
| BspACI | CCGC | 6 cut(s) | 140, 665, 924, 983, 1367, 1465 |
| BspANI | GGCC | 4 cut(s) | 308, 449, 1442, 1521 |
| BspCNI | CTCAG | 5 cut(s) | 871, 949, 1189, 1354, 1536 |
| BspEI | TCCGGA | 1 cut(s) | 268 |
| BspLI | GGNNCC | 3 cut(s) | 768, 1291, 1384 |
| BspMAI | CTGCAG | 1 cut(s) | 1308 |
| BspOI | GCTAGC | 1 cut(s) | 930 |
| BspPI | GGATC | 5 cut(s) | 359, 396, 628, 1121, 1148 |
| BspT104I | TTCGAA | 1 cut(s) | 673 |
| BspT107I | GGYRCC | 1 cut(s) | 1289 |
| BsrFI | RCCGGY | 1 cut(s) | 304 |
| BssAI | RCCGGY | 1 cut(s) | 304 |
| BssECI | CCNNGG | 4 cut(s) | 344, 769, 1145, 1285 |
| BssMI | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| BssNI | GRCGYC | 1 cut(s) | 1290 |
| BssT1I | CCWWGG | 1 cut(s) | 344 |
| Bst2UI | CCWGG | 5 cut(s) | 451, 771, 1003, 1015, 1146 |
| Bst4CI | ACNGT | 3 cut(s) | 566, 642, 1516 |
| Bst6I | CTCTTC | 3 cut(s) | 597, 1419, 1478 |
| BstACI | GRCGYC | 1 cut(s) | 1290 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1303 |
| BstBAI | YACGTR | 1 cut(s) | 1406 |
| BstBI | TTCGAA | 1 cut(s) | 673 |
| BstC8I | GCNNGC | 5 cut(s) | 306, 341, 507, 928, 1494 |
| BstDEI | CTNAG | 5 cut(s) | 879, 957, 1197, 1362, 1523 |
| BstDSI | CCRYGG | 2 cut(s) | 344, 1285 |
| BstF5I | GGATG | 6 cut(s) | 34, 288, 765, 1281, 1435, 1473 |
| BstH2I | RGCGCY | 1 cut(s) | 1293 |
| BstHHI | GCGC | 2 cut(s) | 982, 1292 |
| BstKTI | GATC | 6 cut(s) | 367, 404, 636, 1116, 1156, 1252 |
| BstMAI | GTCTC | 2 cut(s) | 318, 1304 |
| BstMBI | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1303 |
| BstNI | CCWGG | 5 cut(s) | 451, 771, 1003, 1015, 1146 |
| BstNSI | RCATGY | 3 cut(s) | 85, 208, 1079 |
| BstSCI | CCNGG | 6 cut(s) | 449, 769, 1001, 1013, 1144, 1339 |
| BstSFI | CTRYAG | 1 cut(s) | 1304 |
| BstSLI | GKGCMC | 1 cut(s) | 1053 |
| BstV1I | GCAGC | 4 cut(s) | 288, 1290, 1464, 1467 |
| BstX2I | RGATCY | 2 cut(s) | 364, 1153 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 316, 1504 |
| BstYI | RGATCY | 2 cut(s) | 364, 1153 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1523 |
| BsuRI | GGCC | 4 cut(s) | 308, 449, 1442, 1521 |
| BtgI | CCRYGG | 2 cut(s) | 344, 1285 |
| BtsCI | GGATG | 6 cut(s) | 34, 288, 765, 1281, 1435, 1473 |
| BtsIMutI | CAGTG | 1 cut(s) | 562 |
| Cac8I | GCNNGC | 5 cut(s) | 306, 341, 507, 928, 1494 |
| CfoI | GCGC | 2 cut(s) | 982, 1292 |
| Cfr10I | RCCGGY | 1 cut(s) | 304 |
| Cfr13I | GGNCC | 3 cut(s) | 766, 913, 1022 |
| Csp6I | GTAC | 2 cut(s) | 643, 1512 |
| CviAII | CATG | 5 cut(s) | 82, 205, 345, 1076, 1099 |
| CviQI | GTAC | 2 cut(s) | 643, 1512 |
| DdeI | CTNAG | 5 cut(s) | 879, 957, 1197, 1362, 1523 |
| DinI | GGCGCC | 1 cut(s) | 1291 |
| DpnI | GATC | 6 cut(s) | 366, 403, 635, 1115, 1155, 1251 |
| DpnII | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| EaeI | YGGCCR | 2 cut(s) | 306, 447 |
| Eam1104I | CTCTTC | 3 cut(s) | 597, 1419, 1478 |
| EarI | CTCTTC | 3 cut(s) | 597, 1419, 1478 |
| Ecl136II | GAGCTC | 2 cut(s) | 517, 1492 |
| Eco130I | CCWWGG | 1 cut(s) | 344 |
| Eco24I | GRGCYC | 2 cut(s) | 519, 1494 |
| Eco32I | GATATC | 1 cut(s) | 277 |
| Eco47I | GGWCC | 3 cut(s) | 766, 913, 1022 |
| Eco53kI | GAGCTC | 2 cut(s) | 517, 1492 |
| Eco72I | CACGTG | 1 cut(s) | 1406 |
| Eco81I | CCTNAGG | 1 cut(s) | 1523 |
| EcoICRI | GAGCTC | 2 cut(s) | 517, 1492 |
| EcoO109I | RGGNCCY | 1 cut(s) | 766 |
| EcoRII | CCWGG | 5 cut(s) | 449, 769, 1001, 1013, 1144 |
| EcoRV | GATATC | 1 cut(s) | 277 |
| EcoT14I | CCWWGG | 1 cut(s) | 344 |
| EcoT38I | GRGCYC | 2 cut(s) | 519, 1494 |
| EgeI | GGCGCC | 1 cut(s) | 1291 |
| EheI | GGCGCC | 1 cut(s) | 1291 |
| ErhI | CCWWGG | 1 cut(s) | 344 |
| FaeI | CATG | 5 cut(s) | 85, 208, 348, 1079, 1102 |
| FaqI | GGGAC | 2 cut(s) | 362, 752 |
| FatI | CATG | 5 cut(s) | 81, 204, 344, 1075, 1098 |
| FauI | CCCGC | 1 cut(s) | 658 |
| FbaI | TGATCA | 1 cut(s) | 1249 |
| FblI | GTMKAC | 1 cut(s) | 473 |
| Fnu4HI | GCNGC | 6 cut(s) | 302, 983, 1304, 1368, 1453, 1456 |
| FokI | GGATG | 6 cut(s) | 41, 275, 772, 1268, 1442, 1480 |
| FriOI | GRGCYC | 2 cut(s) | 519, 1494 |
| Fsp4HI | GCNGC | 6 cut(s) | 302, 983, 1304, 1368, 1453, 1456 |
| FspBI | CTAG | 6 cut(s) | 65, 681, 927, 1056, 1371, 1476 |
| GlaI | GCGC | 2 cut(s) | 981, 1291 |
| GluI | GCNGC | 6 cut(s) | 302, 983, 1304, 1368, 1453, 1456 |
| GsaI | CCCAGC | 1 cut(s) | 660 |
| GsuI | CTGGAG | 2 cut(s) | 281, 410 |
| HaeII | RGCGCY | 1 cut(s) | 1293 |
| HaeIII | GGCC | 4 cut(s) | 308, 449, 1442, 1521 |
| HapII | CCGG | 4 cut(s) | 269, 305, 1340, 1386 |
| HhaI | GCGC | 2 cut(s) | 982, 1292 |
| Hin1I | GRCGYC | 1 cut(s) | 1290 |
| Hin1II | CATG | 5 cut(s) | 85, 208, 348, 1079, 1102 |
| Hin6I | GCGC | 2 cut(s) | 980, 1290 |
| HinP1I | GCGC | 2 cut(s) | 980, 1290 |
| HpaII | CCGG | 4 cut(s) | 269, 305, 1340, 1386 |
| HphI | GGTGA | 3 cut(s) | 274, 895, 985 |
| Hpy166II | GTNNAC | 4 cut(s) | 474, 1051, 1279, 1354 |
| Hpy188I | TCNGA | 4 cut(s) | 329, 487, 737, 1137 |
| Hpy188III | TCNNGA | 6 cut(s) | 260, 269, 292, 389, 989, 1525 |
| Hpy8I | GTNNAC | 4 cut(s) | 474, 1051, 1279, 1354 |
| Hpy99I | CGWCG | 2 cut(s) | 599, 860 |
| HpyAV | CCTTC | 5 cut(s) | 382, 639, 757, 1024, 1053 |
| HpyCH4III | ACNGT | 3 cut(s) | 566, 642, 1516 |
| HpyCH4IV | ACGT | 5 cut(s) | 90, 498, 552, 1273, 1405 |
| HpyCH4V | TGCA | 7 cut(s) | 339, 505, 756, 1051, 1075, 1306, 1532 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1303 |
| HpyF3I | CTNAG | 5 cut(s) | 879, 957, 1197, 1362, 1523 |
| HpySE526I | ACGT | 5 cut(s) | 90, 498, 552, 1273, 1405 |
| Hsp92I | GRCGYC | 1 cut(s) | 1290 |
| Hsp92II | CATG | 5 cut(s) | 85, 208, 348, 1079, 1102 |
| HspAI | GCGC | 2 cut(s) | 980, 1290 |
| KasI | GGCGCC | 1 cut(s) | 1289 |
| Kpn2I | TCCGGA | 1 cut(s) | 268 |
| KroI | GCCGGC | 1 cut(s) | 304 |
| KroNI | GCCGGC | 1 cut(s) | 306 |
| Ksp22I | TGATCA | 1 cut(s) | 1249 |
| Kzo9I | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| LmnI | GCTCC | 6 cut(s) | 391, 514, 1005, 1205, 1388, 1489 |
| Lsp1109I | GCAGC | 4 cut(s) | 288, 1290, 1464, 1467 |
| LweI | GCATC | 2 cut(s) | 123, 320 |
| MaeI | CTAG | 6 cut(s) | 65, 681, 927, 1056, 1371, 1476 |
| MaeII | ACGT | 5 cut(s) | 90, 498, 552, 1273, 1405 |
| MaeIII | GTNAC | 2 cut(s) | 560, 773 |
| MalI | GATC | 6 cut(s) | 366, 403, 635, 1115, 1155, 1251 |
| MboI | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| MflI | RGATCY | 2 cut(s) | 364, 1153 |
| MhlI | GDGCHC | 3 cut(s) | 519, 1053, 1494 |
| MlsI | TGGCCA | 1 cut(s) | 449 |
| MluCI | AATT | 2 cut(s) | 618, 1234 |
| MluNI | TGGCCA | 1 cut(s) | 449 |
| Mly113I | GGCGCC | 1 cut(s) | 1290 |
| MlyI | GAGTC | 3 cut(s) | 344, 476, 1306 |
| MmeI | TCCRAC | 2 cut(s) | 34, 661 |
| Mox20I | TGGCCA | 1 cut(s) | 449 |
| MroI | TCCGGA | 1 cut(s) | 268 |
| MroNI | GCCGGC | 1 cut(s) | 304 |
| MscI | TGGCCA | 1 cut(s) | 449 |
| MseI | TTAA | 2 cut(s) | 534, 555 |
| MslI | CAYNNNNRTG | 2 cut(s) | 567, 1537 |
| Msp20I | TGGCCA | 1 cut(s) | 449 |
| MspI | CCGG | 4 cut(s) | 269, 305, 1340, 1386 |
| MspR9I | CCNGG | 6 cut(s) | 451, 771, 1003, 1015, 1146, 1341 |
| Mva1269I | GAATGC | 1 cut(s) | 1534 |
| MvaI | CCWGG | 5 cut(s) | 451, 771, 1003, 1015, 1146 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1303 |
| NaeI | GCCGGC | 1 cut(s) | 306 |
| NarI | GGCGCC | 1 cut(s) | 1290 |
| NciI | CCSGG | 1 cut(s) | 1341 |
| NcoI | CCATGG | 1 cut(s) | 344 |
| NdeII | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| NgoMIV | GCCGGC | 1 cut(s) | 304 |
| NheI | GCTAGC | 1 cut(s) | 926 |
| NlaIII | CATG | 5 cut(s) | 85, 208, 348, 1079, 1102 |
| NlaIV | GGNNCC | 3 cut(s) | 768, 1291, 1384 |
| NmeAIII | GCCGAG | 1 cut(s) | 415 |
| NmuCI | GTSAC | 1 cut(s) | 560 |
| NspI | RCATGY | 3 cut(s) | 85, 208, 1079 |
| NspV | TTCGAA | 1 cut(s) | 673 |
| PciI | ACATGT | 2 cut(s) | 81, 204 |
| PctI | GAATGC | 1 cut(s) | 1534 |
| PdiI | GCCGGC | 1 cut(s) | 306 |
| PfeI | GAWTC | 7 cut(s) | 61, 184, 256, 265, 538, 1141, 1166 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 816, 1299 |
| PfoI | TCCNGGA | 1 cut(s) | 1001 |
| PkrI | GCNGC | 6 cut(s) | 303, 984, 1305, 1369, 1454, 1457 |
| PleI | GAGTC | 3 cut(s) | 344, 476, 1306 |
| PluTI | GGCGCC | 1 cut(s) | 1293 |
| PmaCI | CACGTG | 1 cut(s) | 1406 |
| PmlI | CACGTG | 1 cut(s) | 1406 |
| PpsI | GAGTC | 3 cut(s) | 344, 476, 1306 |
| Ppu21I | YACGTR | 1 cut(s) | 1406 |
| PpuMI | RGGWCCY | 1 cut(s) | 766 |
| PscI | ACATGT | 2 cut(s) | 81, 204 |
| Psp124BI | GAGCTC | 2 cut(s) | 519, 1494 |
| Psp1406I | AACGTT | 2 cut(s) | 90, 498 |
| Psp5II | RGGWCCY | 1 cut(s) | 766 |
| Psp6I | CCWGG | 5 cut(s) | 449, 769, 1001, 1013, 1144 |
| PspCI | CACGTG | 1 cut(s) | 1406 |
| PspFI | CCCAGC | 1 cut(s) | 656 |
| PspGI | CCWGG | 5 cut(s) | 449, 769, 1001, 1013, 1144 |
| PspN4I | GGNNCC | 3 cut(s) | 768, 1291, 1384 |
| PspPI | GGNCC | 3 cut(s) | 766, 913, 1022 |
| PspPPI | RGGWCCY | 1 cut(s) | 766 |
| PstI | CTGCAG | 1 cut(s) | 1308 |
| PsuI | RGATCY | 2 cut(s) | 364, 1153 |
| RsaI | GTAC | 2 cut(s) | 644, 1513 |
| RsaNI | GTAC | 2 cut(s) | 643, 1512 |
| RseI | CAYNNNNRTG | 2 cut(s) | 567, 1537 |
| SacI | GAGCTC | 2 cut(s) | 519, 1494 |
| SaqAI | TTAA | 2 cut(s) | 534, 555 |
| SatI | GCNGC | 6 cut(s) | 302, 983, 1304, 1368, 1453, 1456 |
| Sau3AI | GATC | 6 cut(s) | 364, 401, 633, 1113, 1153, 1249 |
| Sau96I | GGNCC | 3 cut(s) | 766, 913, 1022 |
| SchI | GAGTC | 3 cut(s) | 344, 476, 1306 |
| ScrFI | CCNGG | 6 cut(s) | 451, 771, 1003, 1015, 1146, 1341 |
| SduI | GDGCHC | 3 cut(s) | 519, 1053, 1494 |
| SfaNI | GCATC | 2 cut(s) | 123, 320 |
| SfcI | CTRYAG | 1 cut(s) | 1304 |
| SfoI | GGCGCC | 1 cut(s) | 1291 |
| SfuI | TTCGAA | 1 cut(s) | 673 |
| SinI | GGWCC | 3 cut(s) | 766, 913, 1022 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 567, 1537 |
| SmlI | CTYRAG | 1 cut(s) | 803 |
| SmoI | CTYRAG | 1 cut(s) | 803 |
| Sse9I | AATT | 2 cut(s) | 618, 1234 |
| SsiI | CCGC | 6 cut(s) | 140, 665, 924, 983, 1367, 1465 |
| SspDI | GGCGCC | 1 cut(s) | 1289 |
| SspMI | CTAG | 6 cut(s) | 65, 681, 927, 1056, 1371, 1476 |
| SstI | GAGCTC | 2 cut(s) | 519, 1494 |
| StyD4I | CCNGG | 6 cut(s) | 449, 769, 1001, 1013, 1144, 1339 |
| StyI | CCWWGG | 1 cut(s) | 344 |
| TaaI | ACNGT | 3 cut(s) | 566, 642, 1516 |
| TaiI | ACGT | 5 cut(s) | 93, 501, 555, 1276, 1408 |
| TaqI | TCGA | 7 cut(s) | 170, 187, 519, 632, 673, 858, 948 |
| TasI | AATT | 2 cut(s) | 618, 1234 |
| TatI | WGTACW | 1 cut(s) | 642 |
| TauI | GCSGC | 2 cut(s) | 985, 1370 |
| TfiI | GAWTC | 7 cut(s) | 61, 184, 256, 265, 538, 1141, 1166 |
| Tru1I | TTAA | 2 cut(s) | 534, 555 |
| Tru9I | TTAA | 2 cut(s) | 534, 555 |
| TscAI | CASTG | 1 cut(s) | 569 |
| TseFI | GTSAC | 1 cut(s) | 560 |
| TseI | GCWGC | 4 cut(s) | 301, 1303, 1452, 1455 |
| Tsp45I | GTSAC | 1 cut(s) | 560 |
| TspDTI | ATGAA | 4 cut(s) | 123, 246, 364, 776 |
| TspGWI | ACGGA | 2 cut(s) | 1146, 1274 |
| TspRI | CASTG | 1 cut(s) | 569 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 816, 1299 |
| VneI | GTGCAC | 1 cut(s) | 1049 |
| VpaK11BI | GGWCC | 3 cut(s) | 766, 913, 1022 |
| XapI | RAATTY | 1 cut(s) | 1234 |
| XceI | RCATGY | 3 cut(s) | 85, 208, 1079 |
| XmiI | GTMKAC | 1 cut(s) | 473 |
| XspI | CTAG | 6 cut(s) | 65, 681, 927, 1056, 1371, 1476 |