Rh1CG357100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016396
Physical Location & Seq
Reverse (-)
63143984 .. 63145024
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG357100.1

Sequence Viewer

Length: 1041 bp
ATGCAAGCAGAGGAGCTCGACTTTCCTCTGGTTAAGAATCTGCCCTATTACGTTAAGGGTCACTGTGATGGGTTGCTATGTCTGGTTATCAACGACGGCGAAGAGGGTATGCTTGTAATTTACAACCCTTCGATCCAACGGTATAGGAAGCTACCCAGCCCTGCGGGGTTTCGAAGCACTAGGGAGGCGATTGGGATTGGTTATGATAAGACTAAACAAGATTACAAGGTTGTCAGAGTGCCATCAAACTATTGCAGGATGAAGGTTCCTGGTTACAAGCCTAAAGTTGAGGTCTTGGAACTCAAGTCCAATACTTGGAGGCAAATCCCAGAGGAGGACACACCTCCTTATTTCGTCGAGCATATTTTTCAGGCTACTGAGGTGAATGGTGGGCTGTATTGGTTGGTTGAGGACCATCATACCGCTAGCTGTGTGATTTTGAGGTTCGATTTGGCTGAGGAGAAGTTCAGGGTGATTGCGCCGCCTCCTGATGAGTGTTCCAGGAGCATAGCCTGGATTGGACCTTTGAAGGATTGGCTGTGCGTGGTGCACACTAGAAGGTTGAGTGATGTGCATGTTTGGGCTACAAAAGATGACATGACTTGGACAAGGATCATAACTACTTCCAAGTTTCCGAAGATTCCAGGGAGAGATCCGTTTATGGATTCGTTTCGGTATATGCCATTGTGTTACACTGAGAAAGGAGCTGTGCTGATGAGTGTTAGGGGGGAGAATTTTCTTACCTTTGATCACAGGAACAATGTGTTTGAACGTGTGGACATCCGTGGCGCCAAGCATTGGCTGCAGGAGACTCTGTATTGCGAGAGCCTTGTTTCGCCGGGTGTTGGTGTCCACCAGACTGAGGCGGCTTGGAGTTCTGGCTCCGGTGTCAATCTTCTTCCAGGTGATGACCAAGCAGAGGAAGAGGATGATGGGGAGGCCGAAAGTAGCAGCAGCGTTCTGCGGATGATGGCTAGTTTGAAGAGGGAGCTCGCCAACTTGTTGGCTTGTACCGTTGGCCTCAGGAATGCACAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

346

Amino Acids

39.32

Weight (kDa)

5.67

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 21 - 279 4.1e-27 F-box associated beta propeller domain
FBA_3 PF08268 21 - 266 2.8e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016396)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26000
malus_domestica MD01G1168200.v1.1
prunus_persica Prupe.2G264700_v2.0.a1
pyrus_communis pycom01g18120
rosa_chinensis RchiOBHm_Chr1g0372381
rosa_laevigata RLG00000026902
rosa_multiflora Rmu_sc0001755.1_g000005 Rmu_sc0032499.1_g000001
rosa_roxburghii Rroxscaffold_4G00284990
rosa_rugosa Rorug01G0371400
rosa_samantha Rh1AG380100 Rh1BG343600 Rh1CG357100 Rh1DG374800
rosa_wichuraiana Rw1G033410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 788
AccB7I CCANNNNNTGG 2 cut(s) 315, 798
AciI CCGC 5 cut(s) 164, 423, 482, 866, 964
AclWI GGATC 3 cut(s) 127, 620, 647
AcsI RAATTY 1 cut(s) 733
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 1 cut(s) 1012
AfiI CCNNNNNNNGG 6 cut(s) 315, 334, 798, 845, 862, 919
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 3 cut(s) 529, 770, 982
AjnI CCWGG 5 cut(s) 268, 500, 512, 643, 901
AluBI AGCT 5 cut(s) 16, 151, 429, 707, 991
AluI AGCT 5 cut(s) 16, 151, 429, 707, 991
Alw21I GWGCWC 3 cut(s) 18, 552, 993
Alw26I GTCTC 1 cut(s) 803
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 3 cut(s) 127, 620, 647
AoxI GGCC 2 cut(s) 939, 1018
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 3 cut(s) 802, 951, 954
ApoI RAATTY 1 cut(s) 733
AspLEI GCGC 2 cut(s) 481, 791
AspS9I GGNCC 2 cut(s) 412, 521
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 3 cut(s) 394, 484, 917
AsuII TTCGAA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 425
AvaII GGWCC 2 cut(s) 412, 521
AxyI CCTNAGG 1 cut(s) 1022
BaeGI GKGCMC 1 cut(s) 552
BanI GGYRCC 1 cut(s) 788
BanII GRGCYC 2 cut(s) 18, 993
Bbv12I GWGCWC 3 cut(s) 18, 552, 993
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 789, 963, 966
BccI CCATC 5 cut(s) 62, 250, 423, 926, 964
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 5 cut(s) 270, 502, 514, 645, 903
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 4 cut(s) 180, 426, 555, 975
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 792
BisI GCNGC 5 cut(s) 482, 803, 867, 952, 955
BlsI GCNGC 5 cut(s) 483, 804, 868, 953, 956
Bme1390I CCNGG 6 cut(s) 270, 502, 514, 645, 840, 903
Bme18I GGWCC 2 cut(s) 412, 521
BmgT120I GGNCC 2 cut(s) 412, 521
BmiI GGNNCC 3 cut(s) 267, 790, 883
BmrFI CCNGG 6 cut(s) 270, 502, 514, 645, 840, 903
BmtI GCTAGC 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 840
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 644, 784
BsaWI WCCGGW 1 cut(s) 884
BsaXI ACNNNNNCTCC 2 cut(s) 800, 830
Bsc4I CCNNNNNNNGG 6 cut(s) 315, 334, 798, 845, 862, 919
Bse21I CCTNAGG 1 cut(s) 1022
BseBI CCWGG 5 cut(s) 270, 502, 514, 645, 903
BseDI CCNNGG 2 cut(s) 644, 784
BseGI GGATG 4 cut(s) 264, 780, 934, 972
BseLI CCNNNNNNNGG 6 cut(s) 315, 334, 798, 845, 862, 919
BseMII CTCAG 5 cut(s) 369, 447, 687, 852, 1036
BseRI GAGGAG 3 cut(s) 26, 347, 473
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 3 cut(s) 789, 963, 966
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 2 cut(s) 941, 1020
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 3 cut(s) 18, 552, 993
BsiSI CCGG 2 cut(s) 839, 885
BslI CCNNNNNNNGG 6 cut(s) 315, 334, 798, 845, 862, 919
BsmAI GTCTC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 1033
BsnI GGCC 2 cut(s) 941, 1020
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 3 cut(s) 18, 552, 993
Bsp143I GATC 4 cut(s) 132, 612, 652, 748
BspACI CCGC 5 cut(s) 164, 423, 482, 866, 964
BspANI GGCC 2 cut(s) 941, 1020
BspCNI CTCAG 5 cut(s) 370, 448, 688, 853, 1035
BspLI GGNNCC 3 cut(s) 267, 790, 883
BspMAI CTGCAG 1 cut(s) 807
BspOI GCTAGC 1 cut(s) 429
BspPI GGATC 3 cut(s) 127, 620, 647
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 788
BssECI CCNNGG 2 cut(s) 644, 784
BssMI GATC 4 cut(s) 132, 612, 652, 748
BssNI GRCGYC 1 cut(s) 789
Bst2UI CCWGG 5 cut(s) 270, 502, 514, 645, 903
Bst4CI ACNGT 3 cut(s) 65, 141, 1015
Bst6I CTCTTC 3 cut(s) 96, 918, 977
BstACI GRCGYC 1 cut(s) 789
BstAPI GCANNNNNTGC 1 cut(s) 802
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 3 cut(s) 6, 427, 993
BstDEI CTNAG 5 cut(s) 378, 456, 696, 861, 1022
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 4 cut(s) 264, 780, 934, 972
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 481, 791
BstKTI GATC 4 cut(s) 135, 615, 655, 751
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 4 cut(s) 132, 612, 652, 748
BstMWI GCNNNNNNNGC 1 cut(s) 802
BstNI CCWGG 5 cut(s) 270, 502, 514, 645, 903
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 6 cut(s) 268, 500, 512, 643, 838, 901
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 789, 963, 966
BstX2I RGATCY 1 cut(s) 652
BstXI CCANNNNNNTGG 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 652
Bsu36I CCTNAGG 1 cut(s) 1022
BsuRI GGCC 2 cut(s) 941, 1020
BtgI CCRYGG 1 cut(s) 784
BtsCI GGATG 4 cut(s) 264, 780, 934, 972
BtsIMutI CAGTG 2 cut(s) 61, 693
Cac8I GCNNGC 3 cut(s) 6, 427, 993
CfoI GCGC 2 cut(s) 481, 791
Cfr13I GGNCC 2 cut(s) 412, 521
Csp6I GTAC 1 cut(s) 1011
CviAII CATG 2 cut(s) 575, 598
CviQI GTAC 1 cut(s) 1011
DdeI CTNAG 5 cut(s) 378, 456, 696, 861, 1022
DinI GGCGCC 1 cut(s) 790
DpnI GATC 4 cut(s) 134, 614, 654, 750
DpnII GATC 4 cut(s) 132, 612, 652, 748
Eam1104I CTCTTC 3 cut(s) 96, 918, 977
EarI CTCTTC 3 cut(s) 96, 918, 977
Ecl136II GAGCTC 2 cut(s) 16, 991
Eco24I GRGCYC 2 cut(s) 18, 993
Eco47I GGWCC 2 cut(s) 412, 521
Eco53kI GAGCTC 2 cut(s) 16, 991
Eco81I CCTNAGG 1 cut(s) 1022
EcoICRI GAGCTC 2 cut(s) 16, 991
EcoRII CCWGG 5 cut(s) 268, 500, 512, 643, 901
EcoT38I GRGCYC 2 cut(s) 18, 993
EgeI GGCGCC 1 cut(s) 790
EheI GGCGCC 1 cut(s) 790
FaeI CATG 2 cut(s) 578, 601
FatI CATG 2 cut(s) 574, 597
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 5 cut(s) 482, 803, 867, 952, 955
FokI GGATG 4 cut(s) 271, 767, 941, 979
FriOI GRGCYC 2 cut(s) 18, 993
Fsp4HI GCNGC 5 cut(s) 482, 803, 867, 952, 955
FspBI CTAG 4 cut(s) 180, 426, 555, 975
GlaI GCGC 2 cut(s) 480, 790
GluI GCNGC 5 cut(s) 482, 803, 867, 952, 955
GsaI CCCAGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 2 cut(s) 941, 1020
HapII CCGG 2 cut(s) 839, 885
HhaI GCGC 2 cut(s) 481, 791
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 2 cut(s) 578, 601
Hin6I GCGC 2 cut(s) 479, 789
HinP1I GCGC 2 cut(s) 479, 789
HinfI GANTC 4 cut(s) 37, 640, 665, 811
HpaII CCGG 2 cut(s) 839, 885
HphI GGTGA 3 cut(s) 394, 484, 917
Hpy166II GTNNAC 3 cut(s) 550, 778, 853
Hpy188I TCNGA 2 cut(s) 236, 636
Hpy188III TCNNGA 2 cut(s) 488, 1024
Hpy8I GTNNAC 3 cut(s) 550, 778, 853
Hpy99I CGWCG 2 cut(s) 98, 359
HpyAV CCTTC 4 cut(s) 138, 256, 523, 552
HpyCH4III ACNGT 3 cut(s) 65, 141, 1015
HpyCH4IV ACGT 2 cut(s) 51, 772
HpyCH4V TGCA 6 cut(s) 4, 255, 550, 574, 805, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 802
HpyF3I CTNAG 5 cut(s) 378, 456, 696, 861, 1022
HpySE526I ACGT 2 cut(s) 51, 772
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 2 cut(s) 578, 601
HspAI GCGC 2 cut(s) 479, 789
KasI GGCGCC 1 cut(s) 788
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 4 cut(s) 132, 612, 652, 748
LmnI GCTCC 5 cut(s) 13, 504, 704, 887, 988
Lsp1109I GCAGC 3 cut(s) 789, 963, 966
MaeI CTAG 4 cut(s) 180, 426, 555, 975
MaeII ACGT 2 cut(s) 51, 772
MaeIII GTNAC 3 cut(s) 59, 272, 689
MalI GATC 4 cut(s) 134, 614, 654, 750
MboI GATC 4 cut(s) 132, 612, 652, 748
MboII GAAGA 6 cut(s) 113, 649, 887, 890, 935, 994
MflI RGATCY 1 cut(s) 652
MhlI GDGCHC 3 cut(s) 18, 552, 993
MluCI AATT 2 cut(s) 117, 733
Mly113I GGCGCC 1 cut(s) 789
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 1 cut(s) 160
MseI TTAA 2 cut(s) 33, 54
MslI CAYNNNNRTG 2 cut(s) 66, 1036
MspI CCGG 2 cut(s) 839, 885
MspR9I CCNGG 6 cut(s) 270, 502, 514, 645, 840, 903
Mva1269I GAATGC 1 cut(s) 1033
MvaI CCWGG 5 cut(s) 270, 502, 514, 645, 903
MwoI GCNNNNNNNGC 1 cut(s) 802
NarI GGCGCC 1 cut(s) 789
NciI CCSGG 1 cut(s) 840
NdeII GATC 4 cut(s) 132, 612, 652, 748
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 2 cut(s) 578, 601
NlaIV GGNNCC 3 cut(s) 267, 790, 883
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 578
NspV TTCGAA 1 cut(s) 172
PctI GAATGC 1 cut(s) 1033
PfeI GAWTC 3 cut(s) 37, 640, 665
PflMI CCANNNNNTGG 2 cut(s) 315, 798
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 5 cut(s) 483, 804, 868, 953, 956
PleI GAGTC 1 cut(s) 805
PluTI GGCGCC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 805
Psp124BI GAGCTC 2 cut(s) 18, 993
Psp6I CCWGG 5 cut(s) 268, 500, 512, 643, 901
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 5 cut(s) 268, 500, 512, 643, 901
PspN4I GGNNCC 3 cut(s) 267, 790, 883
PspPI GGNCC 2 cut(s) 412, 521
PstI CTGCAG 1 cut(s) 807
PsuI RGATCY 1 cut(s) 652
RsaI GTAC 1 cut(s) 1012
RsaNI GTAC 1 cut(s) 1011
RseI CAYNNNNRTG 2 cut(s) 66, 1036
SacI GAGCTC 2 cut(s) 18, 993
SaqAI TTAA 2 cut(s) 33, 54
SatI GCNGC 5 cut(s) 482, 803, 867, 952, 955
Sau3AI GATC 4 cut(s) 132, 612, 652, 748
Sau96I GGNCC 2 cut(s) 412, 521
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 6 cut(s) 270, 502, 514, 645, 840, 903
SduI GDGCHC 3 cut(s) 18, 552, 993
SfcI CTRYAG 1 cut(s) 803
SfoI GGCGCC 1 cut(s) 790
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 2 cut(s) 412, 521
SmiMI CAYNNNNRTG 2 cut(s) 66, 1036
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 117, 733
SsiI CCGC 5 cut(s) 164, 423, 482, 866, 964
SspDI GGCGCC 1 cut(s) 788
SspMI CTAG 4 cut(s) 180, 426, 555, 975
SstI GAGCTC 2 cut(s) 18, 993
StyD4I CCNGG 6 cut(s) 268, 500, 512, 643, 838, 901
TaaI ACNGT 3 cut(s) 65, 141, 1015
TaiI ACGT 2 cut(s) 54, 775
TaqI TCGA 5 cut(s) 18, 131, 172, 357, 447
TasI AATT 2 cut(s) 117, 733
TauI GCSGC 2 cut(s) 484, 869
TfiI GAWTC 3 cut(s) 37, 640, 665
Tru1I TTAA 2 cut(s) 33, 54
Tru9I TTAA 2 cut(s) 33, 54
TscAI CASTG 2 cut(s) 68, 700
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 802, 951, 954
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 2 cut(s) 645, 773
TspRI CASTG 2 cut(s) 68, 700
Van91I CCANNNNNTGG 2 cut(s) 315, 798
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 412, 521
XapI RAATTY 1 cut(s) 733
XceI RCATGY 1 cut(s) 578
XspI CTAG 4 cut(s) 180, 426, 555, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.