Rh1BG239200

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013141
Physical Location & Seq
Forward (+)
36276341 .. 36279950
3610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG239200.1

Sequence Viewer

Length: 1149 bp
ATGTTGGCAACTCACGCGCAACCCGCTTTGTTAAACTCGCTCCTCCTCCGCATCTCTCTTCGCACACTTCCACTCATTCAAGTAACCAATCTTCGCTACTCGGCGCGTAGATTCACAGCCATGTCCGTACATACCGCCACCTCCGGCGATTCGCCGCAAGACCACGTCGCCGGGGACTGGTTTTCCGTACCGGAGCTCCGACTTCGCGACCACCGCTTCTTCGTGCCTCTAGACTACTCCGCCGATCCTAAGGCTTCGTCTAAGATTTCAATCTTCGCTCGCGAAGTTGTTTCGGTTGGCAAAGAAGAGCAACCACTGCCATACCTATTATTTCTACAAGGTGGACCTGGATTCGAAAGCCCGCGACCAACTGAAGCCAGTGGTTGGGTGCGTAAAGCCTGTGAAGAATATCGTGTCATATTGCTGGATCAGCGAGGAACAGGTTTGTCTACTCCTTTGACACCTTCATCAATGTTGCAACTGAAGTCTGATGTGAAGTTGGCTGATTACTTACAACATTTTCGAGCCAATAATATAGTAAATGATGCTGAGTTTATTCGAGTACGTTTAGTTCCTGATGCAGGACGTTGGACAATTTTGGGTCAGAGTTATGGTGGTTTTTGTGGGGTAACCTATTTGAGTTTTGCACCGCAAGGACTAAAACAAGTCCTATTAACTGGAGGTATCCCTCCAATAGGAAATGGATGCACTGCAGATATCGTGTACAGAGCATGCTTTGAACAGATTATACGTCAGAATGAGAAGTACTACAAAAGGTATCCTCAAGATACTGAGATTGTTCGTGAAGTTGTTAACTTTTTGTCAGAATCTGAGGGAGGCGGGGTGCCTCTTCCATCTGGGGGCATCCTAACCCCAAAGGGATTGCAAACACTTGGTCTTTCTGGCTTAGGATCCAGTACTGGTTTTGAGCGCTTACACTACATGTTTGAGAGGGTCTGGGATCCTGTACTAGTTCCAGGATCACCGAAGCAAATCAGTTATTACTTCTTGGATGCTGTAAGAAAATCTCTGCTTTTCATTCATTTTGAATACAAGATTTCAAATATTTGTGGCATCAGACTCGAACCATTTCACCTATGCAGTTTGAGAAATGGTCATCTTTTAATACAAATCCACTTTATGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

382

Amino Acids

42.73

Weight (kDa)

8.8

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 108 - 265 5.3e-12 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61540
fragaria_vesca FvH4_7g15410 FvH4_7g15410 FvH4_7g15410
malus_domestica MD01G1071500.v1.1
prunus_persica Prupe.2G177700_v2.0.a1
pyrus_communis pycom01g10070
rosa_chinensis RchiOBHm_Chr1g0357731
rosa_laevigata RLG00000028002
rosa_multiflora Rmu_ssc0000399.1_g000023
rosa_roxburghii Rroxscaffold_4G00298570
rosa_rugosa Rorug01G0258000 Rorug01G0258100
rosa_samantha Rh1AG272000 Rh1BG239200 Rh1CG255900 Rh1DG267500
rosa_wichuraiana Rw1G024270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 844
AccB7I CCANNNNNTGG 1 cut(s) 384
AccI GTMKAC 1 cut(s) 449
AccII CGCG 5 cut(s) 17, 106, 207, 282, 364
AciI CCGC 9 cut(s) 24, 49, 135, 155, 214, 240, 362, 650, 840
AclWI GGATC 7 cut(s) 239, 435, 906, 919, 956, 969, 988
AcuI CTGAAG 2 cut(s) 393, 503
AfaI GTAC 7 cut(s) 129, 189, 564, 725, 767, 919, 969
AfeI AGCGCT 1 cut(s) 932
AfiI CCNNNNNNNGG 5 cut(s) 177, 384, 581, 695, 860
AflIII ACRYGT 1 cut(s) 942
AgsI TTSAA 5 cut(s) 80, 270, 740, 1049, 1062
AhlI ACTAGT 1 cut(s) 970
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 2 cut(s) 346, 976
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 198
AlwI GGATC 7 cut(s) 239, 435, 906, 919, 956, 969, 988
AlwNI CAGNNNCTG 1 cut(s) 830
Aor51HI AGCGCT 1 cut(s) 932
ArsI GACNNNNNNTTYG 2 cut(s) 880, 912
Asp700I GAANNNNTTC 1 cut(s) 1089
AspLEI GCGC 3 cut(s) 19, 106, 933
AspS9I GGNCC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 975, 1085
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 344
AxyI CCTNAGG 1 cut(s) 249
BamHI GGATCC 2 cut(s) 911, 961
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 198
BarI GAAGNNNNNNTAC 2 cut(s) 75, 107
Bbv12I GWGCWC 1 cut(s) 198
BccI CCATC 1 cut(s) 862
BcgI CGANNNNNNTGC 2 cut(s) 1063, 1097
BciT130I CCWGG 2 cut(s) 348, 978
BciVI GTATCC 2 cut(s) 695, 789
BcnI CCSGG 1 cut(s) 172
BcuI ACTAGT 1 cut(s) 970
BfaI CTAG 2 cut(s) 230, 971
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 934
BfuI GTATCC 2 cut(s) 695, 789
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 2 cut(s) 767, 919
Bme1390I CCNGG 3 cut(s) 172, 348, 978
Bme18I GGWCC 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 846, 913, 963
BmrFI CCNGG 3 cut(s) 172, 348, 978
BmsI GCATC 7 cut(s) 60, 535, 568, 695, 873, 1003, 1083
BpmI CTGGAG 1 cut(s) 699
Bpu10I CCTNAGC 1 cut(s) 907
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 768
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 828, 858
Bsc4I CCNNNNNNNGG 5 cut(s) 177, 384, 581, 695, 860
Bse1I ACTGG 5 cut(s) 182, 378, 682, 915, 925
Bse21I CCTNAGG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 269
BseBI CCWGG 2 cut(s) 348, 978
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 3 cut(s) 710, 864, 1018
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 5 cut(s) 177, 384, 581, 695, 860
BseMII CTCAG 3 cut(s) 540, 783, 822
BseNI ACTGG 5 cut(s) 182, 378, 682, 915, 925
BseRI GAGGAG 2 cut(s) 32, 35
Bsh1236I CGCG 5 cut(s) 17, 106, 207, 282, 364
BshNI GGYRCC 1 cut(s) 844
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 144, 171, 191
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 5 cut(s) 177, 384, 581, 695, 860
BsmFI GGGAC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 5 cut(s) 244, 427, 911, 961, 980
Bsp68I TCGCGA 2 cut(s) 207, 282
BspACI CCGC 9 cut(s) 24, 49, 135, 155, 214, 240, 362, 650, 840
BspCNI CTCAG 3 cut(s) 541, 784, 823
BspFNI CGCG 5 cut(s) 17, 106, 207, 282, 364
BspLI GGNNCC 3 cut(s) 846, 913, 963
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 7 cut(s) 239, 435, 906, 919, 956, 969, 988
BspQI GCTCTTC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 844
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 5 cut(s) 182, 378, 682, 915, 925
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 5 cut(s) 244, 427, 911, 961, 980
Bst2UI CCWGG 2 cut(s) 348, 978
Bst6I CTCTTC 3 cut(s) 63, 300, 855
BstAPI GCANNNNNTGC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 280, 362, 733
BstDEI CTNAG 6 cut(s) 249, 261, 549, 792, 831, 907
BstEII GGTNACC 1 cut(s) 628
BstENI CCTNNNNNAGG 2 cut(s) 579, 693
BstF5I GGATG 3 cut(s) 710, 864, 1018
BstFNI CGCG 5 cut(s) 17, 106, 207, 282, 364
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 3 cut(s) 19, 106, 933
BstKTI GATC 5 cut(s) 247, 430, 914, 964, 983
BstMBI GATC 5 cut(s) 244, 427, 911, 961, 980
BstMWI GCNNNNNNNGC 5 cut(s) 14, 23, 213, 316, 430
BstNI CCWGG 2 cut(s) 348, 978
BstNSI RCATGY 2 cut(s) 735, 946
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 3 cut(s) 170, 346, 976
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 5 cut(s) 17, 106, 207, 282, 364
BstX2I RGATCY 2 cut(s) 911, 961
BstYI RGATCY 2 cut(s) 911, 961
Bsu36I CCTNAGG 1 cut(s) 249
BsuI GTATCC 2 cut(s) 695, 789
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 710, 864, 1018
BtsI GCAGTG 2 cut(s) 314, 708
BtsIMutI CAGTG 3 cut(s) 314, 385, 708
BtuMI TCGCGA 2 cut(s) 207, 282
Cac8I GCNNGC 3 cut(s) 280, 362, 733
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 3 cut(s) 19, 106, 933
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 7 cut(s) 128, 188, 563, 724, 766, 918, 968
CviAII CATG 3 cut(s) 121, 732, 943
CviJI RGCY 9 cut(s) 119, 196, 254, 360, 377, 398, 503, 527, 906
CviKI_1 RGCY 9 cut(s) 119, 196, 254, 360, 377, 398, 503, 527, 906
CviQI GTAC 7 cut(s) 128, 188, 563, 724, 766, 918, 968
DdeI CTNAG 6 cut(s) 249, 261, 549, 792, 831, 907
DpnI GATC 5 cut(s) 246, 429, 913, 963, 982
DpnII GATC 5 cut(s) 244, 427, 911, 961, 980
Eam1104I CTCTTC 3 cut(s) 63, 300, 855
EarI CTCTTC 3 cut(s) 63, 300, 855
EciI GGCGGA 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 344
Eco47III AGCGCT 1 cut(s) 932
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 2 cut(s) 393, 503
Eco81I CCTNAGG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 628
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 2 cut(s) 579, 693
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 346, 976
EcoRV GATATC 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 3 cut(s) 124, 735, 946
FaqI GGGAC 1 cut(s) 188
FatI CATG 3 cut(s) 120, 731, 942
FauI CCCGC 3 cut(s) 31, 369, 833
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 3 cut(s) 717, 851, 1025
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 2 cut(s) 230, 971
GlaI GCGC 3 cut(s) 18, 105, 932
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 1 cut(s) 699
HaeII RGCGCY 1 cut(s) 934
HapII CCGG 3 cut(s) 144, 171, 191
HhaI GCGC 3 cut(s) 19, 106, 933
Hin1II CATG 3 cut(s) 124, 735, 946
Hin6I GCGC 3 cut(s) 17, 104, 931
HinP1I GCGC 3 cut(s) 17, 104, 931
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 5 cut(s) 111, 149, 351, 827, 1080
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 3 cut(s) 144, 171, 191
HphI GGTGA 2 cut(s) 975, 1085
Hpy166II GTNNAC 4 cut(s) 344, 450, 724, 814
Hpy188I TCNGA 7 cut(s) 200, 490, 606, 756, 826, 832, 1079
Hpy188III TCNNGA 6 cut(s) 206, 230, 281, 575, 785, 803
Hpy8I GTNNAC 4 cut(s) 344, 450, 724, 814
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 474
HpyCH4IV ACGT 4 cut(s) 165, 565, 586, 751
HpyCH4V TGCA 7 cut(s) 478, 581, 647, 708, 713, 886, 1101
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 23, 213, 316, 430
HpyF3I CTNAG 6 cut(s) 249, 261, 549, 792, 831, 907
HpySE526I ACGT 4 cut(s) 165, 565, 586, 751
Hsp92II CATG 3 cut(s) 124, 735, 946
HspAI GCGC 3 cut(s) 17, 104, 931
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 244, 427, 911, 961, 980
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 3 cut(s) 45, 193, 201
LweI GCATC 7 cut(s) 60, 535, 568, 695, 873, 1003, 1083
MaeI CTAG 2 cut(s) 230, 971
MaeII ACGT 4 cut(s) 165, 565, 586, 751
MaeIII GTNAC 2 cut(s) 82, 628
MalI GATC 5 cut(s) 246, 429, 913, 963, 982
MboI GATC 5 cut(s) 244, 427, 911, 961, 980
MboII GAAGA 7 cut(s) 50, 83, 211, 265, 317, 416, 842
MflI RGATCY 2 cut(s) 911, 961
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 594
MlyI GAGTC 1 cut(s) 1074
MmeI TCCRAC 2 cut(s) 223, 569
MroXI GAANNNNTTC 1 cut(s) 1089
MseI TTAA 4 cut(s) 32, 674, 813, 1124
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 3 cut(s) 144, 171, 191
MspR9I CCNGG 3 cut(s) 172, 348, 978
MvaI CCWGG 2 cut(s) 348, 978
MvnI CGCG 5 cut(s) 17, 106, 207, 282, 364
MwoI GCNNNNNNNGC 5 cut(s) 14, 23, 213, 316, 430
NciI CCSGG 1 cut(s) 172
NdeII GATC 5 cut(s) 244, 427, 911, 961, 980
NlaIII CATG 3 cut(s) 124, 735, 946
NlaIV GGNNCC 3 cut(s) 846, 913, 963
NmeAIII GCCGAG 1 cut(s) 80
NruI TCGCGA 2 cut(s) 207, 282
NspI RCATGY 2 cut(s) 735, 946
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 735
PciI ACATGT 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 4 cut(s) 111, 149, 351, 827
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 384
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 1 cut(s) 1074
PpsI GAGTC 1 cut(s) 1074
PscI ACATGT 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 346, 976
PspEI GGTNACC 1 cut(s) 628
PspGI CCWGG 2 cut(s) 346, 976
PspN4I GGNNCC 3 cut(s) 846, 913, 963
PspPI GGNCC 1 cut(s) 344
PsrI GAACNNNNNNTAC 4 cut(s) 555, 587, 732, 764
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 2 cut(s) 911, 961
PsyI GACNNNGTC 1 cut(s) 164
RruI TCGCGA 2 cut(s) 207, 282
RsaI GTAC 7 cut(s) 129, 189, 564, 725, 767, 919, 969
RsaNI GTAC 7 cut(s) 128, 188, 563, 724, 766, 918, 968
RseI CAYNNNNRTG 1 cut(s) 119
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 32, 674, 813, 1124
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 5 cut(s) 244, 427, 911, 961, 980
Sau96I GGNCC 1 cut(s) 344
ScaI AGTACT 2 cut(s) 767, 919
SchI GAGTC 1 cut(s) 1074
ScrFI CCNGG 3 cut(s) 172, 348, 978
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 7 cut(s) 60, 535, 568, 695, 873, 1003, 1083
SfcI CTRYAG 1 cut(s) 711
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 783
SmoI CTYRAG 1 cut(s) 783
SpeI ACTAGT 1 cut(s) 970
SphI GCATGC 1 cut(s) 735
Sse9I AATT 1 cut(s) 594
SsiI CCGC 9 cut(s) 24, 49, 135, 155, 214, 240, 362, 650, 840
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 230, 971
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 170, 346, 976
TaiI ACGT 4 cut(s) 168, 568, 589, 754
TaqI TCGA 4 cut(s) 354, 523, 559, 1083
TasI AATT 1 cut(s) 594
TatI WGTACW 4 cut(s) 723, 765, 917, 967
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 4 cut(s) 111, 149, 351, 827
Tru1I TTAA 4 cut(s) 32, 674, 813, 1124
Tru9I TTAA 4 cut(s) 32, 674, 813, 1124
TscAI CASTG 3 cut(s) 321, 385, 715
TspDTI ATGAA 3 cut(s) 456, 1027, 1031
TspGWI ACGGA 2 cut(s) 115, 175
TspRI CASTG 3 cut(s) 321, 385, 715
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 344
XagI CCTNNNNNAGG 2 cut(s) 579, 693
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 2 cut(s) 735, 946
XmiI GTMKAC 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 2 cut(s) 230, 971
ZrmI AGTACT 2 cut(s) 767, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.