Rh1CG067100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0019314
Physical Location & Seq
Forward (+)
13815153 .. 13826781
11629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG067100.1

Sequence Viewer

Length: 579 bp
ATGGTGGAGATGAAGCAGGAAGAAGAGAAGGAGGGAATGGCGATAATCAAAGGAAAAGAAGCTATCAGATTGAGAAGGGGATTTAAGTTGATTGAAGTTTCTTTCGCAGTCGGAAATGCCCCTCCTTCCATCAACCTATCCACCTTAATCTCCAGCCTACGCATAAAATACGAGTTTCCCTTCTTCCCAACGCTGATCAGAACCACCTCCAATCCAAATTTCCTCAACTCCACAATTCGGGTTTGCACTTTCTTAGTCAATGCAATGTTGAAACCACCACACAGACCTCTATCACTGTCGTGTTCGCCCCGACTTGGGCAGGGTGAGTTAATTTTGGGATTCACTTTCAGTGTATGGCGTGAGGCAGATGAGGAGTGGTTGGATCTAGTCTGTTTGGGGCCAATTTATGTTGTGGTACTGGTACGGCAGGGTTGGTTGATTCCGATCTTAGTGGTGTTGTCGATGTTTGGACGAGTCTTGGTTGGGTTATGGGTGGGTGTGGATATACTGCGCCGCCGGCAAGTGTACAGCGTCCATCGGCAATTGGGTGCGCGCCCGCTCGCGAGGTTGCTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.76

Weight (kDa)

10.02

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019314)

Species Orthologous Gene IDs
pyrus_communis pycom02g08650 pycom15g20200
rosa_laevigata RLG00000022348
rosa_rugosa Rorug05G0301000
rosa_samantha Rh1CG067100 Rh1DG071900 Rh5BG382600 Rh7BG084600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 559
AccII CGCG 2 cut(s) 553, 563
AciI CCGC 2 cut(s) 514, 557
AclWI GGATC 1 cut(s) 390
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 3 cut(s) 417, 423, 527
AfiI CCNNNNNNNGG 3 cut(s) 237, 314, 315
AgsI TTSAA 2 cut(s) 95, 271
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 298
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 390
AoxI GGCC 2 cut(s) 398, 573
ApoI RAATTY 1 cut(s) 217
AspLEI GCGC 3 cut(s) 513, 553, 555
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 335
BccI CCATC 2 cut(s) 137, 543
BceAI ACGGC 1 cut(s) 440
BclI TGATCA 1 cut(s) 195
BfaI CTAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 514
BlsI GCNGC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 443
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 314, 315
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 443
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 3 cut(s) 237, 314, 315
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 423
BsePI GCGCGC 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 553, 563
BshFI GGCC 2 cut(s) 400, 575
BsiSI CCGG 1 cut(s) 517
BslI CCNNNNNNNGG 3 cut(s) 237, 314, 315
BsnI GGCC 2 cut(s) 400, 575
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 3 cut(s) 195, 382, 444
Bsp68I TCGCGA 1 cut(s) 563
BspACI CCGC 2 cut(s) 514, 557
BspANI GGCC 2 cut(s) 400, 575
BspFNI CGCG 2 cut(s) 553, 563
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 516
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 1 cut(s) 516
BssHII GCGCGC 1 cut(s) 551
BssMI GATC 3 cut(s) 195, 382, 444
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 5 cut(s) 518, 553, 557, 561, 573
BstDEI CTNAG 2 cut(s) 253, 448
BstFNI CGCG 2 cut(s) 553, 563
BstHHI GCGC 3 cut(s) 513, 553, 555
BstKTI GATC 3 cut(s) 198, 385, 447
BstMBI GATC 3 cut(s) 195, 382, 444
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstUI CGCG 2 cut(s) 553, 563
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 2 cut(s) 400, 575
BtsIMutI CAGTG 2 cut(s) 293, 355
BtuMI TCGCGA 1 cut(s) 563
Cac8I GCNNGC 5 cut(s) 518, 553, 557, 561, 573
CfoI GCGC 3 cut(s) 513, 553, 555
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 520
Csp6I GTAC 3 cut(s) 416, 422, 526
CviJI RGCY 4 cut(s) 62, 156, 400, 575
CviKI_1 RGCY 4 cut(s) 62, 156, 400, 575
CviQI GTAC 3 cut(s) 416, 422, 526
DdeI CTNAG 2 cut(s) 253, 448
DpnI GATC 3 cut(s) 197, 384, 446
DpnII GATC 3 cut(s) 195, 382, 444
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaiI YATR 5 cut(s) 164, 355, 408, 490, 506
FauI CCCGC 1 cut(s) 564
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 514
Fsp4HI GCNGC 1 cut(s) 514
FspBI CTAG 1 cut(s) 386
GlaI GCGC 3 cut(s) 512, 552, 554
GluI GCNGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 400, 575
HapII CCGG 1 cut(s) 517
HgaI GACGC 1 cut(s) 520
HhaI GCGC 3 cut(s) 513, 553, 555
Hin6I GCGC 3 cut(s) 511, 551, 553
HinP1I GCGC 3 cut(s) 511, 551, 553
HinfI GANTC 3 cut(s) 339, 439, 474
HpaII CCGG 1 cut(s) 517
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 4 cut(s) 68, 113, 200, 444
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 4 cut(s) 22, 69, 135, 190
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 246, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 2 cut(s) 253, 448
HspAI GCGC 3 cut(s) 511, 551, 553
KroI GCCGGC 1 cut(s) 516
KroNI GCCGGC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 195, 382, 444
LpnPI CCDG 7 cut(s) 2, 166, 305, 404, 413, 530, 557
MaeI CTAG 1 cut(s) 386
MalI GATC 3 cut(s) 197, 384, 446
MbiI CCGCTC 1 cut(s) 559
MboI GATC 3 cut(s) 195, 382, 444
MboII GAAGA 3 cut(s) 32, 35, 175
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 382
MluCI AATT 5 cut(s) 217, 234, 330, 402, 542
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 91, 360
MnlI CCTC 8 cut(s) 25, 132, 217, 233, 297, 355, 364, 558
MroNI GCCGGC 1 cut(s) 516
MseI TTAA 3 cut(s) 84, 146, 329
MslI CAYNNNNRTG 1 cut(s) 298
MspI CCGG 1 cut(s) 517
MunI CAATTG 1 cut(s) 542
MvnI CGCG 2 cut(s) 553, 563
MwoI GCNNNNNNNGC 1 cut(s) 517
NaeI GCCGGC 1 cut(s) 518
NdeII GATC 3 cut(s) 195, 382, 444
NgoMIV GCCGGC 1 cut(s) 516
NlaIV GGNNCC 1 cut(s) 399
NruI TCGCGA 1 cut(s) 563
OliI CACNNNNGTG 1 cut(s) 298
PauI GCGCGC 1 cut(s) 551
PdiI GCCGGC 1 cut(s) 518
PfeI GAWTC 2 cut(s) 339, 439
PkrI GCNGC 1 cut(s) 515
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 382
PteI GCGCGC 1 cut(s) 551
RruI TCGCGA 1 cut(s) 563
RsaI GTAC 3 cut(s) 417, 423, 527
RsaNI GTAC 3 cut(s) 416, 422, 526
RseI CAYNNNNRTG 1 cut(s) 298
SaqAI TTAA 3 cut(s) 84, 146, 329
SatI GCNGC 1 cut(s) 514
Sau3AI GATC 3 cut(s) 195, 382, 444
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 483
SetI ASST 6 cut(s) 64, 138, 146, 209, 289, 569
SmiMI CAYNNNNRTG 1 cut(s) 298
Sse9I AATT 5 cut(s) 217, 234, 330, 402, 542
SsiI CCGC 2 cut(s) 514, 557
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 461
TasI AATT 5 cut(s) 217, 234, 330, 402, 542
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 2 cut(s) 339, 439
Tru1I TTAA 3 cut(s) 84, 146, 329
Tru9I TTAA 3 cut(s) 84, 146, 329
TscAI CASTG 2 cut(s) 300, 355
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 2 cut(s) 300, 355
XapI RAATTY 1 cut(s) 217
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.