Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019314

Physical Location & Seq

Genomic Coordinates Forward (+)

60761166 .. 60784345

Gene Structure 23180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGGAGATGAAGCATGAAGAAGAGAAGGAGGGAATGATGATAATCAAAGGAGAAGAAGTTATCGGACTGAGAATCGTAAACATGTTTGTGGCTTGGAGCTATTCATTTCAACATGGCTTTGATTCTCTTCACTATGTGCTTCATTCCTATTTCCAAGGTCATATTGTTAGTACTATTTCCCAATTCTCCATTGGTGTTGTAAATGGCGATGTAGGACCTGACCCAGCTCAGAATCGGGTCGTTGCTGGCGATGGGAGACAGGGAGAGGTTGGGTCCGTCGGACTAGAAGACAGAGATGAGCCACTTCATGTCAGCGATGGAGGACTCGAGGAGGTTGGACACCATGCGGAAGTCGGCGATGGTGGTGATGGAGAAGACCTGGCGGAGGACACCGCTGTGCTTGCACTTGCGGACAAGGGTGAGGGCGCGGTCGAGCTAACTTGGGTTTTGGTTGAGTTCTTCAATTTCACGAACGATTCCGAAGTATTGATTCACTATTGTTGGATGATCAAGATTGCCATTGCGGTGCTGTTGGTTGTTGTAAAAAACTTGGTGTACGACCTACCAAACCAATTAAAGATGTCATCAGTTGCTGCTTTGAAACTAGTAGCAAGGAATGAATGTTTAAAGGTAGTTAAAAATAACTATTGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004144 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005811 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006996 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0031984 GO:0034389 GO:0042175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0071704 GO:0071840 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko04975 map00561 map04975

Pfam Domains

Protein Families

DAGAT

Protein Analysis

219

Amino Acids

24.0

Weight (kDa)

4.66

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019314)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08650 pycom15g20200
rosa_laevigata	RLG00000022348
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh1CG067100 Rh1DG071900 Rh5BG382600 Rh7BG084600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	6 cut(s)	350, 386, 396, 413, 431, 527
AdeI	CACNNNGTG	1 cut(s)	139
AfaI	GTAC	2 cut(s)	175, 560
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	113, 466, 604
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	1 cut(s)	381
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	102, 230, 439
AluI	AGCT	3 cut(s)	102, 230, 439
Alw26I	GTCTC	1 cut(s)	253
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	218, 276
AsuHPI	GGTGA	2 cut(s)	380, 434
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	218, 276
BbsI	GAAGAC	2 cut(s)	297, 384
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	248, 314, 356, 365
BciT130I	CCWGG	1 cut(s)	383
BclI	TGATCA	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	253
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	2 cut(s)	287, 608
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	218, 276
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	218, 276
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	297, 384
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	157
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	1 cut(s)	513
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	62, 245
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	583
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	510
BspACI	CCGC	6 cut(s)	350, 386, 396, 413, 431, 527
BspCNI	CTCAG	2 cut(s)	63, 244
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	522
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	383
Bst6I	CTCTTC	2 cut(s)	18, 135
BstC8I	GCNNGC	2 cut(s)	250, 405
BstDEI	CTNAG	2 cut(s)	71, 231
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	513
BstFNI	CGCG	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	1 cut(s)	513
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	510
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	2 cut(s)	297, 384
BtgZI	GCGATG	4 cut(s)	225, 267, 333, 375
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	250, 405
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	218, 276
Csp6I	GTAC	2 cut(s)	174, 559
CviAII	CATG	5 cut(s)	17, 85, 116, 311, 347
CviJI	RGCY	6 cut(s)	95, 102, 120, 230, 304, 439
CviKI_1	RGCY	6 cut(s)	95, 102, 120, 230, 304, 439
CviQI	GTAC	2 cut(s)	174, 559
DdeI	CTNAG	2 cut(s)	71, 231
DpnI	GATC	1 cut(s)	512
DpnII	GATC	1 cut(s)	510
DraI	TTTAAA	1 cut(s)	630
DraIII	CACNNNGTG	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	18, 135
EarI	CTCTTC	2 cut(s)	18, 135
EciI	GGCGGA	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	218, 276
Eco88I	CYCGRG	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	5 cut(s)	20, 88, 119, 314, 350
FaiI	YATR	7 cut(s)	18, 86, 117, 138, 165, 312, 348
FatI	CATG	5 cut(s)	16, 84, 115, 310, 346
FbaI	TGATCA	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	1 cut(s)	520
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	2 cut(s)	287, 608
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	597
GsaI	CCCAGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	5 cut(s)	20, 88, 119, 314, 350
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	6 cut(s)	75, 125, 235, 327, 479, 493
HphI	GGTGA	2 cut(s)	380, 434
Hpy166II	GTNNAC	2 cut(s)	82, 559
Hpy188I	TCNGA	4 cut(s)	68, 234, 284, 484
Hpy188III	TCNNGA	2 cut(s)	472, 514
Hpy8I	GTNNAC	2 cut(s)	82, 559
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	2 cut(s)	71, 231
Hsp92II	CATG	5 cut(s)	20, 88, 119, 314, 350
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	510
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	234, 234, 240, 248, 368, 395
Lsp1109I	GCAGC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	287, 608
MalI	GATC	1 cut(s)	512
MboI	GATC	1 cut(s)	510
MboII	GAAGA	7 cut(s)	32, 35, 68, 122, 302, 389, 454
MluCI	AATT	3 cut(s)	185, 466, 575
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	3 cut(s)	262, 319, 485
MnlI	CCTC	7 cut(s)	25, 262, 317, 325, 328, 382, 418
MseI	TTAA	3 cut(s)	578, 629, 639
MslI	CAYNNNNRTG	3 cut(s)	89, 398, 527
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	1 cut(s)	510
NlaIII	CATG	5 cut(s)	20, 88, 119, 314, 350
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	329
PciI	ACATGT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	5 cut(s)	75, 125, 235, 479, 493
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	218
PscI	ACATGT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	218, 276
PspPPI	RGGWCCY	1 cut(s)	218
PspXI	VCTCGAGB	1 cut(s)	329
PstNI	CAGNNNCTG	1 cut(s)	596
RsaI	GTAC	2 cut(s)	175, 560
RsaNI	GTAC	2 cut(s)	174, 559
RseI	CAYNNNNRTG	3 cut(s)	89, 398, 527
SaqAI	TTAA	3 cut(s)	578, 629, 639
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	1 cut(s)	510
Sau96I	GGNCC	2 cut(s)	218, 276
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	218, 276
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	3 cut(s)	89, 398, 527
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	3 cut(s)	185, 466, 575
SsiI	CCGC	6 cut(s)	350, 386, 396, 413, 431, 527
SspMI	CTAG	2 cut(s)	287, 608
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	157
TaqI	TCGA	2 cut(s)	330, 435
TasI	AATT	3 cut(s)	185, 466, 575
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	5 cut(s)	75, 125, 235, 479, 493
Tru1I	TTAA	3 cut(s)	578, 629, 639
Tru9I	TTAA	3 cut(s)	578, 629, 639
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	6 cut(s)	26, 33, 96, 134, 299, 636
TspGWI	ACGGA	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	218, 276
XagI	CCTNNNNNAGG	1 cut(s)	386
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	329
XspI	CTAG	2 cut(s)	287, 608
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.