Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

34973275 .. 34977996

Gene Structure 4722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0301000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1761 bp

ATGGCGACGACAGCGGAAACAATCTCAGCGGCTATGCAACTGATCGACCCAAAGAAAGAGAACCTAAAGAAGGCCTTCGACGACCTTCAATCCCACTCCGACGTCCTCTCTCTCTTCTCTCTCACCTGGTCCGACCTCGATTCCCATTTCACCTCCCTCCAAAACTCCCTTTCCCAAAAACTCCAACTCCTCCAAACCCTAGAGTCCCAATCCCCAAACCCTTCTTCCTCTGCCCCAATCCCACAAGCCCAGATAACCCAAGACCCATCTTCGTCGAATTTACAGAGCCAGATACCAAAGGACTCATCTTTGGACCCCAAAGCACCAACCCAGATAGCGAAGGATCCGAATTTGTGTACCCAGCTGGCAAAGGACTCATTTTTGGAGCCCAAAGCACCAACCCAGGTAGCAAAGGATCCGAATTTGTCGACCCAGGGAGCAAAGGACCCGAATTTGTCGACTCAGGTAGCGAAAGAGTCTTCTTCTTCATTGAACCCACCGAGCCGGAACAGTGTTGAGCTCAACAGTGGTCATGATGCAGATGCAGTGCCTCCTCGGCCTGAGTTGGTGGCGTTTTGTGAGAAAATGGATGCAATTGGGCTGAGGAAGTATATGAATGACACTAAAAATAACCGGAACACGATCCGGTCCGAGCTCCATGGGGCTTTACGGCACGCTCAGGACCCGGCGTTGATGGTTCTCAATGCAATGGAGGGGTTTTACGTGGAGAATAAGGGTGATAAGGACCTGGAAGTGAGTAGTGTGAGGAGAACTGGTGTGCTGTTGTTGGAAGTGTTGTGTGGAGTTTCGCCAAATGTAGGAGTGGAGGTGAGGGAGAGAGCCAAGAAGTTGGCATTGGAGTGGAAAGGGAAGGTTAGTATGGAGGGAGAGAACCAGTTTGAGGCGTTGGGATTCTTGCATTTGGTGGCAGCTTATGGACTGGTGTCTGAATTCAACATGGATGAGCTTGTGGATCATTTGGTTGTTGTTGCAAGGTATAGGCAAGCTACTGATTTGTGCCGCAGACTTGGCTTGGGAGATAAGCTTGCAGATCTGATTCAGAAACTCATGAGCAATGGCAAACATCTTTTGGCTATCAAGTTCATTTCTGAATTTGATATGACTGATAAGTTTCCACCTGTTCCCATCTTAAAAGCGTATGTGAAGGAGTCTAAAAGGTTGGCCAAGAAAGTTTGTGAGGAAGGAAATAACTCTAAGAAGGCGGCGAATGAGGCCATAGCCAAAGAAACCGGTGCTCTGAAATCAGTAATTAAAATTATTGAGGACCTCAAGCTCGAATCTGAATATCCACCGTCTTCTCTTGAAAAGCGAATTGACCAGTTGGAGAAGGAGAAGGCAAACAGAAAACGGCAAGCAGGAGCTCCTGCTGGGAAGCCTTTTCAACTGCAGCAGCAGTATGGTAACAAGCGTCCTCGAATGACTGCTCCTGTTGGCTCCACAGCAGTCTCAAATGGTGCAGCAGGTTTGTTGGTAGAGTCTCCTGCTCCATATGTGAGCTCTGCAGCTGCACCCTATGTTGTGTCGGGCACTGCTCCTCCAGTTGCCCCTTATGTGGGTTCATCAACTGGGCAGTATGGTTTTGCAGGAGGCCAGATGGGTTTTCCTGGGAACCCAGGCCCCTCTAGTACCCATTTATACTCATCCGAACAGTATGTGCCCTCGGGCTATTACAACAGGCTAACTGCCTATGGTGGATATGGTGTACCCCCTCAATACCATCCATCTTACTATTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

586

Amino Acids

63.66

Weight (kDa)

7.61

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	183 - 459	5.3e-101	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	1472
AccI	GTMKAC	2 cut(s)	428, 458
AciI	CCGC	4 cut(s)	14, 29, 1021, 1223
AclWI	GGATC	6 cut(s)	338, 351, 410, 423, 637, 981
AcoI	YGGCCR	1 cut(s)	1182
AcsI	RAATTY	6 cut(s)	277, 349, 421, 451, 950, 1112
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	358, 1648, 1725
AfiI	CCNNNNNNNGG	5 cut(s)	70, 818, 901, 1573, 1574
AgeI	ACCGGT	1 cut(s)	1250
AgsI	TTSAA	5 cut(s)	89, 493, 955, 1325, 1403
AjnI	CCWGG	6 cut(s)	125, 402, 432, 747, 1624, 1633
AjuI	GAANNNNNNNTTGG	4 cut(s)	208, 240, 839, 871
Alw21I	GWGCWC	5 cut(s)	522, 657, 1258, 1384, 1520
Alw26I	GTCTC	2 cut(s)	1471, 1503
AlwI	GGATC	6 cut(s)	338, 351, 410, 423, 637, 981
Ama87I	CYCGRG	1 cut(s)	1681
AoxI	GGCC	6 cut(s)	72, 557, 1182, 1233, 1609, 1636
ApeKI	GCWGC	6 cut(s)	929, 1408, 1411, 1478, 1523, 1526
ApoI	RAATTY	6 cut(s)	277, 349, 421, 451, 950, 1112
AsiGI	ACCGGT	1 cut(s)	1250
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	8 cut(s)	129, 313, 445, 648, 682, 745, 1285, 1637
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	4 cut(s)	115, 142, 749, 841
AvaI	CYCGRG	1 cut(s)	1681
AvaII	GGWCC	7 cut(s)	129, 313, 445, 648, 682, 745, 1285
BaeGI	GKGCMC	2 cut(s)	1550, 1680
BalI	TGGCCA	1 cut(s)	1184
BamHI	GGATCC	2 cut(s)	343, 415
BanII	GRGCYC	5 cut(s)	390, 522, 657, 1384, 1520
BbsI	GAAGAC	2 cut(s)	471, 1308
Bbv12I	GWGCWC	5 cut(s)	522, 657, 1258, 1384, 1520
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	6 cut(s)	941, 1420, 1423, 1490, 1513, 1535
BccI	CCATC	6 cut(s)	274, 688, 1154, 1609, 1746, 1750
BceAI	ACGGC	2 cut(s)	686, 1385
BciT130I	CCWGG	6 cut(s)	127, 404, 434, 749, 1626, 1635
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	2 cut(s)	1471, 1503
BfaI	CTAG	2 cut(s)	200, 1644
BfmI	CTRYAG	2 cut(s)	1406, 1521
BfuAI	ACCTGC	1 cut(s)	1472
BglI	GCCNNNNNGGC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	9 cut(s)	30, 930, 1021, 1224, 1409, 1412, 1479, 1524, 1527
BlsI	GCNGC	9 cut(s)	31, 931, 1022, 1225, 1410, 1413, 1480, 1525, 1528
Bme1390I	CCNGG	7 cut(s)	127, 404, 434, 686, 749, 1626, 1635
Bme18I	GGWCC	7 cut(s)	129, 313, 445, 648, 682, 745, 1285
BmeT110I	CYCGRG	1 cut(s)	1681
BmgT120I	GGNCC	8 cut(s)	129, 313, 445, 648, 682, 745, 1285, 1637
BmiI	GGNNCC	9 cut(s)	315, 345, 387, 417, 447, 684, 1456, 1631, 1639
BmrFI	CCNGG	7 cut(s)	127, 404, 434, 686, 749, 1626, 1635
BmrI	ACTGGG	1 cut(s)	1596
BmsI	GCATC	3 cut(s)	526, 532, 580
BmuI	ACTGGG	1 cut(s)	1596
BoxI	GACNNNNGTC	1 cut(s)	943
BpiI	GAAGAC	2 cut(s)	471, 1308
BpmI	CTGGAG	1 cut(s)	1542
Bpu10I	CCTNAGC	2 cut(s)	602, 678
BpuEI	CTTGAG	1 cut(s)	1274
BpuMI	CCSGG	1 cut(s)	686
BsaAI	YACGTR	1 cut(s)	724
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	8 cut(s)	402, 432, 433, 554, 658, 1625, 1633, 1680
BsaWI	WCCGGW	3 cut(s)	633, 645, 1250
BsaXI	ACNNNNNCTCC	8 cut(s)	171, 201, 760, 790, 813, 843, 1540, 1570
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 818, 901, 1573, 1574
Bse118I	RCCGGY	1 cut(s)	1250
Bse1I	ACTGG	6 cut(s)	778, 895, 945, 1339, 1559, 1591
Bse3DI	GCAATG	2 cut(s)	714, 1081
BseBI	CCWGG	6 cut(s)	127, 404, 434, 749, 1626, 1635
BseDI	CCNNGG	8 cut(s)	402, 432, 433, 554, 658, 1625, 1633, 1680
BseGI	GGATG	4 cut(s)	595, 967, 1661, 1738
BseLI	CCNNNNNNNGG	5 cut(s)	70, 818, 901, 1573, 1574
BseMI	GCAATG	2 cut(s)	714, 1081
BseMII	CTCAG	5 cut(s)	39, 476, 552, 593, 692
BseNI	ACTGG	6 cut(s)	778, 895, 945, 1339, 1559, 1591
BseRI	GAGGAG	4 cut(s)	179, 543, 781, 1545
BseSI	GKGCMC	2 cut(s)	1550, 1680
BseXI	GCAGC	6 cut(s)	941, 1420, 1423, 1490, 1513, 1535
BseYI	CCCAGC	2 cut(s)	360, 1388
BsgI	GTGCAG	2 cut(s)	1497, 1512
BshFI	GGCC	6 cut(s)	74, 559, 1184, 1235, 1611, 1638
BshTI	ACCGGT	1 cut(s)	1250
BsiHKAI	GWGCWC	5 cut(s)	522, 657, 1258, 1384, 1520
BsiHKCI	CYCGRG	1 cut(s)	1681
BsiSI	CCGG	5 cut(s)	505, 634, 646, 686, 1251
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	5 cut(s)	70, 818, 901, 1573, 1574
BsmAI	GTCTC	2 cut(s)	1471, 1503
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	6 cut(s)	74, 559, 1184, 1235, 1611, 1638
BsoBI	CYCGRG	1 cut(s)	1681
Bsp1286I	GDGCHC	8 cut(s)	390, 522, 657, 1258, 1384, 1520, 1550, 1680
Bsp143I	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	4 cut(s)	14, 29, 1021, 1223
BspANI	GGCC	6 cut(s)	74, 559, 1184, 1235, 1611, 1638
BspCNI	CTCAG	5 cut(s)	38, 475, 553, 594, 691
BspHI	TCATGA	2 cut(s)	532, 1068
BspLI	GGNNCC	9 cut(s)	315, 345, 387, 417, 447, 684, 1456, 1631, 1639
BspMAI	CTGCAG	2 cut(s)	1410, 1525
BspMI	ACCTGC	1 cut(s)	1472
BspPI	GGATC	6 cut(s)	338, 351, 410, 423, 637, 981
BsrDI	GCAATG	2 cut(s)	714, 1081
BsrFI	RCCGGY	1 cut(s)	1250
BsrI	ACTGG	6 cut(s)	778, 895, 945, 1339, 1559, 1591
BssAI	RCCGGY	1 cut(s)	1250
BssECI	CCNNGG	8 cut(s)	402, 432, 433, 554, 658, 1625, 1633, 1680
BssMI	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	6 cut(s)	127, 404, 434, 749, 1626, 1635
Bst4CI	ACNGT	4 cut(s)	512, 527, 1314, 1671
Bst6I	CTCTTC	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	724
BstC8I	GCNNGC	5 cut(s)	366, 675, 1005, 1047, 1374
BstDEI	CTNAG	7 cut(s)	25, 462, 561, 602, 678, 1215, 1755
BstDSI	CCRYGG	1 cut(s)	658
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	4 cut(s)	595, 967, 1661, 1738
BstKTI	GATC	6 cut(s)	45, 346, 418, 645, 976, 1054
BstMAI	GTCTC	2 cut(s)	1471, 1503
BstMBI	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 556, 1029, 1232
BstNI	CCWGG	6 cut(s)	127, 404, 434, 749, 1626, 1635
BstPAI	GACNNNNGTC	1 cut(s)	943
BstSCI	CCNGG	7 cut(s)	125, 402, 432, 684, 747, 1624, 1633
BstSFI	CTRYAG	2 cut(s)	1406, 1521
BstSLI	GKGCMC	2 cut(s)	1550, 1680
BstV1I	GCAGC	6 cut(s)	941, 1420, 1423, 1490, 1513, 1535
BstV2I	GAAGAC	2 cut(s)	471, 1308
BstX2I	RGATCY	3 cut(s)	343, 415, 1051
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstYI	RGATCY	3 cut(s)	343, 415, 1051
BsuRI	GGCC	6 cut(s)	74, 559, 1184, 1235, 1611, 1638
BtgI	CCRYGG	1 cut(s)	658
BtsCI	GGATG	4 cut(s)	595, 967, 1661, 1738
BtsI	GCAGTG	2 cut(s)	552, 1548
BtsIMutI	CAGTG	4 cut(s)	517, 532, 552, 1548
BveI	ACCTGC	1 cut(s)	1472
Cac8I	GCNNGC	5 cut(s)	366, 675, 1005, 1047, 1374
CciI	TCATGA	2 cut(s)	532, 1068
Cfr10I	RCCGGY	1 cut(s)	1250
Cfr13I	GGNCC	8 cut(s)	129, 313, 445, 648, 682, 745, 1285, 1637
CpoI	CGGWCCG	1 cut(s)	648
CseI	GACGC	1 cut(s)	1418
CsiI	ACCWGGT	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	357, 1647, 1724
CspAI	ACCGGT	1 cut(s)	1250
CspI	CGGWCCG	1 cut(s)	648
CviAII	CATG	4 cut(s)	533, 659, 958, 1069
CviQI	GTAC	3 cut(s)	357, 1647, 1724
DdeI	CTNAG	7 cut(s)	25, 462, 561, 602, 678, 1215, 1755
DpnI	GATC	6 cut(s)	44, 345, 417, 644, 975, 1053
DpnII	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
EaeI	YGGCCR	1 cut(s)	1182
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	4 cut(s)	520, 655, 1382, 1518
Eco130I	CCWWGG	1 cut(s)	658
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	5 cut(s)	390, 522, 657, 1384, 1520
Eco47I	GGWCC	7 cut(s)	129, 313, 445, 648, 682, 745, 1285
Eco53kI	GAGCTC	4 cut(s)	520, 655, 1382, 1518
Eco88I	CYCGRG	1 cut(s)	1681
EcoICRI	GAGCTC	4 cut(s)	520, 655, 1382, 1518
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoO109I	RGGNCCY	5 cut(s)	445, 682, 745, 1285, 1637
EcoRI	GAATTC	1 cut(s)	950
EcoRII	CCWGG	6 cut(s)	125, 402, 432, 747, 1624, 1633
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	5 cut(s)	390, 522, 657, 1384, 1520
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	4 cut(s)	536, 662, 961, 1072
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	532, 658, 957, 1068
FauNDI	CATATG	1 cut(s)	1510
FblI	GTMKAC	2 cut(s)	428, 458
Fnu4HI	GCNGC	9 cut(s)	30, 930, 1021, 1224, 1409, 1412, 1479, 1524, 1527
FokI	GGATG	4 cut(s)	602, 974, 1648, 1725
FriOI	GRGCYC	5 cut(s)	390, 522, 657, 1384, 1520
Fsp4HI	GCNGC	9 cut(s)	30, 930, 1021, 1224, 1409, 1412, 1479, 1524, 1527
FspBI	CTAG	2 cut(s)	200, 1644
GluI	GCNGC	9 cut(s)	30, 930, 1021, 1224, 1409, 1412, 1479, 1524, 1527
GsaI	CCCAGC	2 cut(s)	364, 1392
GsuI	CTGGAG	1 cut(s)	1542
HaeIII	GGCC	6 cut(s)	74, 559, 1184, 1235, 1611, 1638
HapII	CCGG	5 cut(s)	505, 634, 646, 686, 1251
HgaI	GACGC	1 cut(s)	1418
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	536, 662, 961, 1072
HincII	GTYRAC	2 cut(s)	429, 459
HindII	GTYRAC	2 cut(s)	429, 459
HindIII	AAGCTT	1 cut(s)	1043
HpaII	CCGG	5 cut(s)	505, 634, 646, 686, 1251
HphI	GGTGA	4 cut(s)	115, 142, 749, 841
Hpy166II	GTNNAC	4 cut(s)	357, 429, 459, 1724
Hpy188III	TCNNGA	4 cut(s)	533, 680, 1069, 1322
Hpy8I	GTNNAC	4 cut(s)	357, 429, 459, 1724
Hpy99I	CGWCG	4 cut(s)	10, 83, 104, 277
HpyCH4III	ACNGT	4 cut(s)	512, 527, 1314, 1671
HpyCH4IV	ACGT	2 cut(s)	102, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 556, 1029, 1232
HpyF3I	CTNAG	7 cut(s)	25, 462, 561, 602, 678, 1215, 1755
HpySE526I	ACGT	2 cut(s)	102, 723
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	536, 662, 961, 1072
Kzo9I	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
LmnI	GCTCC	9 cut(s)	385, 437, 660, 1379, 1387, 1450, 1460, 1510, 1558
Lsp1109I	GCAGC	6 cut(s)	941, 1420, 1423, 1490, 1513, 1535
LweI	GCATC	3 cut(s)	526, 532, 580
MabI	ACCWGGT	1 cut(s)	125
MaeI	CTAG	2 cut(s)	200, 1644
MaeII	ACGT	2 cut(s)	102, 723
MaeIII	GTNAC	1 cut(s)	1421
MalI	GATC	6 cut(s)	44, 345, 417, 644, 975, 1053
MboI	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
MboII	GAAGA	7 cut(s)	106, 216, 261, 471, 474, 477, 1308
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	3 cut(s)	343, 415, 1051
MhlI	GDGCHC	8 cut(s)	390, 522, 657, 1258, 1384, 1520, 1550, 1680
MlsI	TGGCCA	1 cut(s)	1184
MluNI	TGGCCA	1 cut(s)	1184
MlyI	GAGTC	7 cut(s)	212, 296, 368, 454, 485, 1178, 1505
MmeI	TCCRAC	5 cut(s)	123, 156, 208, 768, 1323
Mox20I	TGGCCA	1 cut(s)	1184
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	1184
MseI	TTAA	2 cut(s)	1151, 1272
MslI	CAYNNNNRTG	1 cut(s)	859
Msp20I	TGGCCA	1 cut(s)	1184
MspA1I	CMGCKG	4 cut(s)	14, 29, 364, 1526
MspI	CCGG	5 cut(s)	505, 634, 646, 686, 1251
MspR9I	CCNGG	7 cut(s)	127, 404, 434, 686, 749, 1626, 1635
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	6 cut(s)	127, 404, 434, 749, 1626, 1635
MwoI	GCNNNNNNNGC	4 cut(s)	11, 556, 1029, 1232
NciI	CCSGG	1 cut(s)	686
NcoI	CCATGG	1 cut(s)	658
NdeI	CATATG	1 cut(s)	1510
NdeII	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
NlaIII	CATG	4 cut(s)	536, 662, 961, 1072
NlaIV	GGNNCC	9 cut(s)	315, 345, 387, 417, 447, 684, 1456, 1631, 1639
NmeAIII	GCCGAG	1 cut(s)	535
PagI	TCATGA	2 cut(s)	532, 1068
PasI	CCCWGGG	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	140, 912, 1057, 1298
PinAI	ACCGGT	1 cut(s)	1250
PkrI	GCNGC	9 cut(s)	31, 931, 1022, 1225, 1410, 1413, 1480, 1525, 1528
PleI	GAGTC	7 cut(s)	211, 296, 368, 454, 484, 1177, 1504
PpsI	GAGTC	7 cut(s)	211, 296, 368, 454, 484, 1177, 1504
Ppu21I	YACGTR	1 cut(s)	724
PpuMI	RGGWCCY	4 cut(s)	445, 682, 745, 1285
PshAI	GACNNNNGTC	1 cut(s)	943
Psp124BI	GAGCTC	4 cut(s)	522, 657, 1384, 1520
Psp5II	RGGWCCY	4 cut(s)	445, 682, 745, 1285
Psp6I	CCWGG	6 cut(s)	125, 402, 432, 747, 1624, 1633
PspFI	CCCAGC	2 cut(s)	360, 1388
PspGI	CCWGG	6 cut(s)	125, 402, 432, 747, 1624, 1633
PspN4I	GGNNCC	9 cut(s)	315, 345, 387, 417, 447, 684, 1456, 1631, 1639
PspPI	GGNCC	8 cut(s)	129, 313, 445, 648, 682, 745, 1285, 1637
PspPPI	RGGWCCY	4 cut(s)	445, 682, 745, 1285
PstI	CTGCAG	2 cut(s)	1410, 1525
PsuI	RGATCY	3 cut(s)	343, 415, 1051
PvuII	CAGCTG	2 cut(s)	364, 1526
RsaI	GTAC	3 cut(s)	358, 1648, 1725
RsaNI	GTAC	3 cut(s)	357, 1647, 1724
RseI	CAYNNNNRTG	1 cut(s)	859
Rsr2I	CGGWCCG	1 cut(s)	648
RsrII	CGGWCCG	1 cut(s)	648
SacI	GAGCTC	4 cut(s)	522, 657, 1384, 1520
SalI	GTCGAC	2 cut(s)	427, 457
SaqAI	TTAA	2 cut(s)	1151, 1272
SatI	GCNGC	9 cut(s)	30, 930, 1021, 1224, 1409, 1412, 1479, 1524, 1527
Sau3AI	GATC	6 cut(s)	42, 343, 415, 642, 973, 1051
Sau96I	GGNCC	8 cut(s)	129, 313, 445, 648, 682, 745, 1285, 1637
SchI	GAGTC	7 cut(s)	212, 296, 368, 454, 485, 1178, 1505
ScrFI	CCNGG	7 cut(s)	127, 404, 434, 686, 749, 1626, 1635
SduI	GDGCHC	8 cut(s)	390, 522, 657, 1258, 1384, 1520, 1550, 1680
SexAI	ACCWGGT	1 cut(s)	125
SfaNI	GCATC	3 cut(s)	526, 532, 580
SfcI	CTRYAG	2 cut(s)	1406, 1521
SinI	GGWCC	7 cut(s)	129, 313, 445, 648, 682, 745, 1285
SmiMI	CAYNNNNRTG	1 cut(s)	859
SmlI	CTYRAG	1 cut(s)	1289
SmoI	CTYRAG	1 cut(s)	1289
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	4 cut(s)	14, 29, 1021, 1223
SspMI	CTAG	2 cut(s)	200, 1644
SstI	GAGCTC	4 cut(s)	522, 657, 1384, 1520
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	7 cut(s)	125, 402, 432, 684, 747, 1624, 1633
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	4 cut(s)	512, 527, 1314, 1671
TaiI	ACGT	2 cut(s)	105, 726
TaqI	TCGA	8 cut(s)	45, 78, 138, 275, 428, 458, 1296, 1435
TauI	GCSGC	3 cut(s)	32, 1023, 1226
TfiI	GAWTC	4 cut(s)	140, 912, 1057, 1298
Tru1I	TTAA	2 cut(s)	1151, 1272
Tru9I	TTAA	2 cut(s)	1151, 1272
TscAI	CASTG	4 cut(s)	517, 532, 552, 1555
TseI	GCWGC	6 cut(s)	929, 1408, 1411, 1478, 1523, 1526
TspDTI	ATGAA	4 cut(s)	477, 629, 1093, 1569
TspRI	CASTG	4 cut(s)	517, 532, 552, 1555
VpaK11BI	GGWCC	7 cut(s)	129, 313, 445, 648, 682, 745, 1285
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	6 cut(s)	277, 349, 421, 451, 950, 1112
XmiI	GTMKAC	2 cut(s)	428, 458
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	2 cut(s)	200, 1644
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.