RLG00000006997

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000535
Physical Location & Seq
Reverse (-)
12564207 .. 12565286
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006997

Sequence Viewer

Length: 591 bp
ATGCTATTCTTTGCTTTTCCTCCTCTTTCTGCTCGGTGTTTGCAGCTTGCCAGCTTTTGTGGAGGACTTTTAGATTCGGGTTTGGATATGACTTTGGATCCGTATAAGTTGGGTGAATGTGGTACTGCAATTGGCGGGATCGAACCTTGGAGGTGGAGAGGGTTTCTACCCTCTGATGTTTGCTTTGGCAGTGGCGCACAAATCTGGTTGTCGAGCCCAGAACACCGCTGTCAACAAGGAATGGTTGCGGAGAATTTGCTGCGGCTCGACCGATTCCGTCTGAGGCGTTTTGGCCTTGTTGATTTTGGAGATGAGGGTAGCGATCTGCTGATGGTGAAGGACGGTGGTCTGGCTCAATATGCTTTCGTTGGTGATGTCGACGGTTGGGATAGGAATTGGTCTGGTCGTGGTGGCCTAGTAGTGGCTCTATGCAGGAGCTTTGCTGCGAGGAGGCAAGTCGGAGGTGGTGGTGGGGTGCCCTTAGTACTTCTTGGGGTGCTCTTCGTAATTGCCATGTGGGCTGGGGCTCTGTGGGCTAATGCTTACTGTGATGCAACTACAATATTGGACATGGAGCGCTTGACGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.29

Weight (kDa)

5.13

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 475
AccI GTMKAC 1 cut(s) 378
AciI CCGC 4 cut(s) 135, 226, 248, 262
AclWI GGATC 3 cut(s) 92, 105, 146
AcsI RAATTY 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 2 cut(s) 124, 486
AfeI AGCGCT 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 421
AluBI AGCT 3 cut(s) 46, 54, 438
AluI AGCT 3 cut(s) 46, 54, 438
Alw21I GWGCWC 1 cut(s) 501
AlwI GGATC 3 cut(s) 92, 105, 146
Aor51HI AGCGCT 1 cut(s) 578
AoxI GGCC 2 cut(s) 292, 412
ApeKI GCWGC 3 cut(s) 43, 259, 443
ApoI RAATTY 1 cut(s) 253
AspLEI GCGC 2 cut(s) 197, 579
AsuHPI GGTGA 3 cut(s) 125, 346, 383
BaeGI GKGCMC 1 cut(s) 480
BamHI GGATCC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 2 cut(s) 218, 529
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 3 cut(s) 55, 246, 430
BccI CCATC 1 cut(s) 325
BfaI CTAG 2 cut(s) 416, 589
BfoI RGCGCY 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 4 cut(s) 44, 260, 263, 444
BlsI GCNGC 4 cut(s) 45, 261, 264, 445
BmcAI AGTACT 1 cut(s) 486
BmiI GGNNCC 2 cut(s) 99, 477
BmsI GCATC 1 cut(s) 541
BoxI GACNNNNGTC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 272
BseRI GAGGAG 2 cut(s) 12, 463
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 3 cut(s) 55, 246, 430
BseYI CCCAGC 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 294, 414
BshNI GGYRCC 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 2 cut(s) 294, 414
Bsp1286I GDGCHC 4 cut(s) 218, 480, 501, 529
Bsp143I GATC 3 cut(s) 97, 138, 322
BspACI CCGC 4 cut(s) 135, 226, 248, 262
BspANI GGCC 2 cut(s) 294, 414
BspCNI CTCAG 1 cut(s) 273
BspLI GGNNCC 2 cut(s) 99, 477
BspPI GGATC 3 cut(s) 92, 105, 146
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 3 cut(s) 97, 138, 322
BssNI GRCGYC 1 cut(s) 584
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 344, 383, 548
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 48, 52
BstDEI CTNAG 2 cut(s) 281, 481
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 2 cut(s) 197, 579
BstKTI GATC 3 cut(s) 100, 141, 325
BstMBI GATC 3 cut(s) 97, 138, 322
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 359, 518, 533
BstPAI GACNNNNGTC 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 55, 246, 430
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 2 cut(s) 294, 414
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 48, 52
CfoI GCGC 2 cut(s) 197, 579
Csp6I GTAC 2 cut(s) 123, 485
CviAII CATG 2 cut(s) 514, 571
CviQI GTAC 2 cut(s) 123, 485
DdeI CTNAG 2 cut(s) 281, 481
DpnI GATC 3 cut(s) 99, 140, 324
DpnII GATC 3 cut(s) 97, 138, 322
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 146
Eco24I GRGCYC 2 cut(s) 218, 529
Eco47III AGCGCT 1 cut(s) 578
EcoT14I CCWWGG 1 cut(s) 146
EcoT38I GRGCYC 2 cut(s) 218, 529
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 2 cut(s) 517, 574
FaiI YATR 6 cut(s) 89, 105, 360, 430, 515, 572
FatI CATG 2 cut(s) 513, 570
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 44, 260, 263, 444
FriOI GRGCYC 2 cut(s) 218, 529
Fsp4HI GCNGC 4 cut(s) 44, 260, 263, 444
FspBI CTAG 2 cut(s) 416, 589
GlaI GCGC 2 cut(s) 196, 578
GluI GCNGC 4 cut(s) 44, 260, 263, 444
GsaI CCCAGC 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 580
HaeIII GGCC 2 cut(s) 294, 414
HhaI GCGC 2 cut(s) 197, 579
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 2 cut(s) 517, 574
Hin6I GCGC 2 cut(s) 195, 577
HinP1I GCGC 2 cut(s) 195, 577
HincII GTYRAC 2 cut(s) 233, 379
HindII GTYRAC 2 cut(s) 233, 379
HinfI GANTC 2 cut(s) 74, 273
HphI GGTGA 3 cut(s) 125, 346, 383
Hpy166II GTNNAC 2 cut(s) 233, 379
Hpy188I TCNGA 3 cut(s) 175, 282, 461
Hpy8I GTNNAC 2 cut(s) 233, 379
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 3 cut(s) 344, 383, 548
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 4 cut(s) 43, 128, 432, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 359, 518, 533
HpyF3I CTNAG 2 cut(s) 281, 481
HpySE526I ACGT 1 cut(s) 584
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 2 cut(s) 517, 574
HspAI GCGC 2 cut(s) 195, 577
Kzo9I GATC 3 cut(s) 97, 138, 322
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 2 cut(s) 435, 574
LpnPI CCDG 7 cut(s) 64, 190, 231, 335, 387, 418, 507
Lsp1109I GCAGC 3 cut(s) 55, 246, 430
LweI GCATC 1 cut(s) 541
MaeI CTAG 2 cut(s) 416, 589
MaeII ACGT 1 cut(s) 584
MalI GATC 3 cut(s) 99, 140, 324
MboI GATC 3 cut(s) 97, 138, 322
MboII GAAGA 1 cut(s) 493
MfeI CAATTG 1 cut(s) 129
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 4 cut(s) 218, 480, 501, 529
MluCI AATT 4 cut(s) 129, 253, 394, 507
MmeI TCCRAC 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 228
MunI CAATTG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 359, 518, 533
NdeII GATC 3 cut(s) 97, 138, 322
NlaIII CATG 2 cut(s) 517, 574
NlaIV GGNNCC 2 cut(s) 99, 477
PciSI GCTCTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 74, 273
PkrI GCNGC 4 cut(s) 45, 261, 264, 445
PshAI GACNNNNGTC 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 521
PspN4I GGNNCC 2 cut(s) 99, 477
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 124, 486
RsaNI GTAC 2 cut(s) 123, 485
SalI GTCGAC 1 cut(s) 377
SapI GCTCTTC 1 cut(s) 506
SatI GCNGC 4 cut(s) 44, 260, 263, 444
Sau3AI GATC 3 cut(s) 97, 138, 322
ScaI AGTACT 1 cut(s) 486
SduI GDGCHC 4 cut(s) 218, 480, 501, 529
SetI ASST 7 cut(s) 48, 56, 148, 155, 440, 466, 587
SfaNI GCATC 1 cut(s) 541
Sse9I AATT 4 cut(s) 129, 253, 394, 507
SsiI CCGC 4 cut(s) 135, 226, 248, 262
SspI AATATT 1 cut(s) 564
SspMI CTAG 2 cut(s) 416, 589
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 344, 383, 548
TaiI ACGT 1 cut(s) 587
TaqI TCGA 4 cut(s) 141, 212, 267, 378
TaqII GACCGA 1 cut(s) 285
TasI AATT 4 cut(s) 129, 253, 394, 507
TatI WGTACW 1 cut(s) 484
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 2 cut(s) 74, 273
TscAI CASTG 1 cut(s) 196
TseI GCWGC 3 cut(s) 43, 259, 443
TspGWI ACGGA 2 cut(s) 90, 266
TspRI CASTG 1 cut(s) 196
XapI RAATTY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 416, 589
ZraI GACGTC 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.