Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

80389346 .. 80396777

Gene Structure 7432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG506200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCTGGCGACGGTGAATCTTTGACTACGGGGGTGGGAATTTTCTTCTTCCCCTTCTCTGTGATCGATATTGCTACTGGGCAACGAAGAAATCTGACGTTGATTGGGTTGGATGATGGCTTCGAGCTCGGAGAGTCTCCTCCTTACTCTCTCGCTCTCTCTGCTAGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTTAGTAGATTTAGCAATGCTGCAGTAAGTGAAGAGTTGATCACCCCACCTGTTCATATGAATTGCATCCAGTTTCTGGTGGGATTGAGATTGGGGCGACGACCTATGGTTTTGTCACTGGACCGAGGTACTGGAAAGGGCACCGGTGACCTGGTTTGTTCGGTGGGTGATGGCAACCTTGGCAATAGGGGTAGTGTTGGTCGTGGCGGCCTGCAATGGGAACAGATCTGGGAGCGCTTTGGTCCGAGTGATACAGCGGCGCCTTGCATGGTGGTGATGGCAAACAAGGATGGTCGCGGTGGCTTCCTTATCAGTGGCCTGTGTAGTCGAATGATAGCGGCGTGGACTGGTGGCGGTGGTGGCCTGGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0010035 GO:0010038 GO:0016491 GO:0016620 GO:0016903 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

191

Amino Acids

19.97

Weight (kDa)

6.58

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	341, 460
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	498
AciI	CCGC	5 cut(s)	408, 458, 498, 539, 555
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	1 cut(s)	331
AfeI	AGCGCT	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	277, 418
AgeI	ACCGGT	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	351, 564
AluBI	AGCT	2 cut(s)	127, 181
AluI	AGCT	2 cut(s)	127, 181
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	141
AlwNI	CAGNNNCTG	1 cut(s)	277
Aor51HI	AGCGCT	1 cut(s)	437
AoxI	GGCC	3 cut(s)	409, 517, 562
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	39
AsiGI	ACCGGT	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	438, 463
AspS9I	GGNCC	2 cut(s)	322, 443
AsuHPI	GGTGA	5 cut(s)	26, 235, 359, 380, 487
AvaII	GGWCC	2 cut(s)	322, 443
BaeGI	GKGCMC	1 cut(s)	344
BanI	GGYRCC	2 cut(s)	341, 460
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	4 cut(s)	110, 365, 472, 485
BciT130I	CCWGG	2 cut(s)	353, 566
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	165, 574
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	2 cut(s)	439, 464
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	222, 409, 459, 540
BlsI	GCNGC	4 cut(s)	223, 410, 460, 541
Bme1390I	CCNGG	2 cut(s)	353, 566
Bme18I	GGWCC	2 cut(s)	322, 443
BmgT120I	GGNCC	2 cut(s)	322, 443
BmiI	GGNNCC	2 cut(s)	343, 462
BmrFI	CCNGG	2 cut(s)	353, 566
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	325, 379
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 418
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	5 cut(s)	82, 271, 324, 337, 553
Bse3DI	GCAATG	2 cut(s)	223, 422
BseBI	CCWGG	2 cut(s)	353, 566
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	325, 379
BseGI	GGATG	3 cut(s)	118, 267, 496
BseLI	CCNNNNNNNGG	2 cut(s)	277, 418
BseMI	GCAATG	2 cut(s)	223, 422
BseNI	ACTGG	5 cut(s)	82, 271, 324, 337, 553
BseRI	GAGGAG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	3 cut(s)	411, 519, 564
BshNI	GGYRCC	2 cut(s)	341, 460
BshTI	ACCGGT	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	277, 418
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	411, 519, 564
Bsp1286I	GDGCHC	2 cut(s)	129, 344
Bsp143I	GATC	3 cut(s)	63, 240, 426
BspACI	CCGC	5 cut(s)	408, 458, 498, 539, 555
BspANI	GGCC	3 cut(s)	411, 519, 564
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	343, 462
BspMAI	CTGCAG	1 cut(s)	226
BspT107I	GGYRCC	2 cut(s)	341, 460
BsrDI	GCAATG	2 cut(s)	223, 422
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	5 cut(s)	82, 271, 324, 337, 553
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	325, 379
BssMI	GATC	3 cut(s)	63, 240, 426
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	353, 566
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	7, 413
BstDEI	CTNAG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	3 cut(s)	118, 267, 496
BstFNI	CGCG	1 cut(s)	498
BstH2I	RGCGCY	2 cut(s)	439, 464
BstHHI	GCGC	2 cut(s)	438, 463
BstKTI	GATC	3 cut(s)	66, 243, 429
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	63, 240, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 381, 561
BstNI	CCWGG	2 cut(s)	353, 566
BstPI	GGTNACC	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	351, 564
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	411, 519, 564
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	118, 267, 496
BtsIMutI	CAGTG	2 cut(s)	317, 520
Cac8I	GCNNGC	2 cut(s)	7, 413
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	2 cut(s)	438, 463
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	322, 443
ClaI	ATCGAT	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	330
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	8 cut(s)	5, 120, 127, 181, 411, 504, 519, 564
CviKI_1	RGCY	8 cut(s)	5, 120, 127, 181, 411, 504, 519, 564
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	177
DinI	GGCGCC	1 cut(s)	462
DpnI	GATC	3 cut(s)	65, 242, 428
DpnII	GATC	3 cut(s)	63, 240, 426
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	322, 443
Eco47III	AGCGCT	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	351, 564
EcoT14I	CCWWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	462
EheI	GGCGCC	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	472
FaiI	YATR	4 cut(s)	258, 260, 308, 470
FatI	CATG	1 cut(s)	468
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	222, 409, 459, 540
FokI	GGATG	3 cut(s)	125, 254, 503
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	222, 409, 459, 540
FspBI	CTAG	2 cut(s)	165, 574
GlaI	GCGC	2 cut(s)	437, 462
GluI	GCNGC	4 cut(s)	222, 409, 459, 540
HaeII	RGCGCY	2 cut(s)	439, 464
HaeIII	GGCC	3 cut(s)	411, 519, 564
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	2 cut(s)	438, 463
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	2 cut(s)	436, 461
HinP1I	GCGC	2 cut(s)	436, 461
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	3 cut(s)	17, 134, 569
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	5 cut(s)	26, 235, 359, 380, 487
Hpy166II	GTNNAC	1 cut(s)	546
Hpy188I	TCNGA	3 cut(s)	96, 131, 447
Hpy8I	GTNNAC	1 cut(s)	546
Hpy99I	CGWCG	2 cut(s)	14, 303
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	224, 267, 415, 468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 381, 561
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	2 cut(s)	436, 461
KasI	GGCGCC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	63, 240, 426
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	276
MabI	ACCWGGT	1 cut(s)	351
MaeI	CTAG	2 cut(s)	165, 574
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	315, 347
MalI	GATC	3 cut(s)	65, 242, 428
MboI	GATC	3 cut(s)	63, 240, 426
MboII	GAAGA	4 cut(s)	37, 40, 99, 245
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	2 cut(s)	129, 344
MluCI	AATT	2 cut(s)	39, 262
Mly113I	GGCGCC	1 cut(s)	461
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	2 cut(s)	150, 320
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	353, 566
MvaI	CCWGG	2 cut(s)	353, 566
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 381, 561
NarI	GGCGCC	1 cut(s)	461
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	63, 240, 426
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	343, 462
NmuCI	GTSAC	2 cut(s)	315, 347
PfeI	GAWTC	2 cut(s)	17, 569
PflMI	CCANNNNNTGG	1 cut(s)	277
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	223, 410, 460, 541
PleI	GAGTC	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	351, 564
PspEI	GGTNACC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	351, 564
PspN4I	GGNNCC	2 cut(s)	343, 462
PspPI	GGNCC	2 cut(s)	322, 443
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	426
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	129
SatI	GCNGC	4 cut(s)	222, 409, 459, 540
Sau3AI	GATC	3 cut(s)	63, 240, 426
Sau96I	GGNCC	2 cut(s)	322, 443
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	353, 566
SduI	GDGCHC	2 cut(s)	129, 344
SetI	ASST	9 cut(s)	101, 129, 170, 183, 253, 307, 331, 354, 381
SexAI	ACCWGGT	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	462
SgrAI	CRCCGGYG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	322, 443
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	39, 262
SsiI	CCGC	5 cut(s)	408, 458, 498, 539, 555
SspDI	GGCGCC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	165, 574
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	351, 564
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	66, 123, 529
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	39, 262
TauI	GCSGC	3 cut(s)	411, 461, 542
TfiI	GAWTC	2 cut(s)	17, 569
TscAI	CASTG	2 cut(s)	324, 520
TseFI	GTSAC	2 cut(s)	315, 347
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	2 cut(s)	315, 347
TspDTI	ATGAA	2 cut(s)	245, 275
TspRI	CASTG	2 cut(s)	324, 520
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	322, 443
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	2 cut(s)	165, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.