Rh5AG396300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000535
Physical Location & Seq
Forward (+)
68674894 .. 68675454
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG396300.1

Sequence Viewer

Length: 438 bp
ATGGTGCGTGATCTGGCTGCTGATGCTGGTATCGTGGATACGCTGGGTATTGATGATGTGGTTGATCTGGGCTTTGACCGGATCTTCTCTGGTGGAGATGTATGCTGGCGACTGTGGGAGCCAGGTATAACTAACGCCACCCTCTGGCTTACAGAGGCGAAGTTTGATGCTTGGGTACTGGATCGGGCTTCCGCTGTTGGAGGCGACAATCTGATGTTGGTGAAGGATGGCGGTCTGGTTTCGCCTGGGAGTGATCTGTGTCGGCTTGGTAGTGGTGGCATGTTGGTGGAATTGTACCAGTGCTTTACGGCGGCGGCTCGGGACGGAGGTGGTGGTAGTGCAGGTGTCACCCACTGGGCGGCGGTAAATCGGAGCTCTAACCCTAGCGATGATGGAGTTGAGGGTGATTTTTCATCCTCTTCTCCTAGTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.01

Weight (kDa)

4.1

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 6 cut(s) 192, 231, 311, 314, 359, 362
AclWI GGATC 2 cut(s) 89, 189
AfaI GTAC 2 cut(s) 177, 296
AfiI CCNNNNNNNGG 2 cut(s) 144, 358
AjnI CCWGG 2 cut(s) 121, 244
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw21I GWGCWC 2 cut(s) 377, 433
AlwI GGATC 2 cut(s) 89, 189
Ama87I CYCGRG 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 232, 340, 416
AvaI CYCGRG 1 cut(s) 318
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 377, 433
BbvI GCAGC 1 cut(s) 4
BccI CCATC 2 cut(s) 221, 386
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 123, 246
BciVI GTATCC 1 cut(s) 31
BfaI CTAG 2 cut(s) 384, 426
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 4 cut(s) 18, 312, 315, 360
BlsI GCNGC 4 cut(s) 19, 313, 316, 361
Bme1390I CCNGG 2 cut(s) 123, 246
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 2 cut(s) 123, 246
BmrI ACTGGG 1 cut(s) 364
BmsI GCATC 2 cut(s) 13, 157
BmuI ACTGGG 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 358
Bse1I ACTGG 3 cut(s) 183, 298, 359
BseBI CCWGG 2 cut(s) 123, 246
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 232, 413
BseLI CCNNNNNNNGG 2 cut(s) 144, 358
BseNI ACTGG 3 cut(s) 183, 298, 359
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 377, 433
BsiHKCI CYCGRG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 144, 358
BsmFI GGGAC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 377, 433
Bsp143I GATC 5 cut(s) 10, 64, 81, 181, 253
BspACI CCGC 6 cut(s) 192, 231, 311, 314, 359, 362
BspLI GGNNCC 1 cut(s) 120
BspMI ACCTGC 1 cut(s) 332
BspPI GGATC 2 cut(s) 89, 189
BsrI ACTGG 3 cut(s) 183, 298, 359
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 5 cut(s) 10, 64, 81, 181, 253
Bst2UI CCWGG 2 cut(s) 123, 246
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 2 cut(s) 232, 413
BstKTI GATC 5 cut(s) 13, 67, 84, 184, 256
BstMBI GATC 5 cut(s) 10, 64, 81, 181, 253
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 2 cut(s) 123, 246
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 121, 244
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuI GTATCC 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 232, 413
BtsIMutI CAGTG 2 cut(s) 305, 352
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 176, 295
CviAII CATG 1 cut(s) 280
CviJI RGCY 8 cut(s) 17, 72, 121, 148, 188, 265, 317, 375
CviKI_1 RGCY 8 cut(s) 17, 72, 121, 148, 188, 265, 317, 375
CviQI GTAC 2 cut(s) 176, 295
DpnI GATC 5 cut(s) 12, 66, 83, 183, 255
DpnII GATC 5 cut(s) 10, 64, 81, 181, 253
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 121, 244
EcoT38I GRGCYC 1 cut(s) 377
FaeI CATG 1 cut(s) 283
FaiI YATR 3 cut(s) 103, 128, 281
FaqI GGGAC 1 cut(s) 335
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 4 cut(s) 18, 312, 315, 360
FokI GGATG 2 cut(s) 239, 400
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 4 cut(s) 18, 312, 315, 360
FspBI CTAG 2 cut(s) 384, 426
GluI GCNGC 4 cut(s) 18, 312, 315, 360
GsaI CCCAGC 1 cut(s) 47
HapII CCGG 1 cut(s) 79
Hin1II CATG 1 cut(s) 283
HpaII CCGG 1 cut(s) 79
HphI GGTGA 3 cut(s) 232, 340, 416
Hpy188I TCNGA 2 cut(s) 213, 372
Hpy188III TCNNGA 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 5 cut(s) 10, 64, 81, 181, 253
LmnI GCTCC 2 cut(s) 118, 372
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 13, 157
MaeI CTAG 2 cut(s) 384, 426
MaeIII GTNAC 1 cut(s) 346
MalI GATC 5 cut(s) 12, 66, 83, 183, 255
MboI GATC 5 cut(s) 10, 64, 81, 181, 253
MboII GAAGA 2 cut(s) 76, 411
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 377, 433
MluCI AATT 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 6 cut(s) 148, 152, 194, 320, 394, 427
MseI TTAA 1 cut(s) 436
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 123, 246
MvaI CCWGG 2 cut(s) 123, 246
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 5 cut(s) 10, 64, 81, 181, 253
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 4 cut(s) 19, 313, 316, 361
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 121, 244
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 121, 244
PspN4I GGNNCC 1 cut(s) 120
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 2 cut(s) 177, 296
RsaNI GTAC 2 cut(s) 176, 295
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 4 cut(s) 18, 312, 315, 360
Sau3AI GATC 5 cut(s) 10, 64, 81, 181, 253
ScrFI CCNGG 2 cut(s) 123, 246
SduI GDGCHC 2 cut(s) 377, 433
SetI ASST 4 cut(s) 127, 331, 346, 377
SfaNI GCATC 2 cut(s) 13, 157
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 290
SsiI CCGC 6 cut(s) 192, 231, 311, 314, 359, 362
SspMI CTAG 2 cut(s) 384, 426
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 121, 244
TaaI ACNGT 1 cut(s) 114
TasI AATT 1 cut(s) 290
TauI GCSGC 3 cut(s) 314, 317, 362
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 2 cut(s) 305, 359
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 2 cut(s) 305, 359
Van91I CCANNNNNTGG 1 cut(s) 144
XceI RCATGY 1 cut(s) 283
XspI CTAG 2 cut(s) 384, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.