Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

65510481 .. 65511860

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015395

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAAAATAGTTTTGCCCAGCCCCACGGCACCATAGAAGAAGTGCATGCGCCACCGTCAGAAACGGAGTTTTGTCTTTCCACAACGACGACGGCATGGCGGAGGTCAAGAAAACCAAGAAGGGAAGAGGTTTACGGCCAGCTCGATGTGTACGAGTACGAGAAGGCAGTGCAGGAGGAGCAGTACAAGAAGAACCGCCGGTTTAACCAGAAAGATGAGGTGATTCGTCAAGCCTTTGCAGAAGATGATGTGGAGGACACTTCTGCGCAAGAGAAACAGCAAATCGTGAATGAGGAAAATCCTGAGGCTGAAAGGCCTGTTTTAGTCCCTGGATGGGGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031167 GO:0031974 GO:0031981 GO:0032040 GO:0032259 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp14

Protein Analysis

115

Amino Acids

13.39

Weight (kDa)

4.82

Isoelectric Point (pI)

67.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp14	PF04615	57 - 114	1e-11	Utp14 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	2 cut(s)	100, 196
AcoI	YGGCCR	1 cut(s)	136
AfaI	GTAC	3 cut(s)	152, 158, 185
AfiI	CCNNNNNNNGG	2 cut(s)	334, 335
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AoxI	GGCC	3 cut(s)	136, 314, 337
AspLEI	GCGC	2 cut(s)	52, 268
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	29
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	3 cut(s)	43, 108, 151
BciT130I	CCWGG	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	31, 338
BmrFI	CCNGG	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	25, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 335
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	25, 328
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	334, 335
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	18
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	138, 316, 339
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	334, 335
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	138, 316, 339
BspACI	CCGC	2 cut(s)	100, 196
BspANI	GGCC	3 cut(s)	138, 316, 339
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	31, 338
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	2 cut(s)	25, 328
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	48, 140
BstDEI	CTNAG	1 cut(s)	303
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	52, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	328
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	138, 316, 339
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	48, 140
CfoI	GCGC	2 cut(s)	52, 268
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	3 cut(s)	151, 157, 184
CviAII	CATG	2 cut(s)	47, 96
CviJI	RGCY	7 cut(s)	22, 138, 142, 233, 308, 316, 339
CviKI_1	RGCY	7 cut(s)	22, 138, 142, 233, 308, 316, 339
CviQI	GTAC	3 cut(s)	151, 157, 184
DdeI	CTNAG	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	316
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	2 cut(s)	50, 99
FaiI	YATR	3 cut(s)	35, 48, 97
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	46, 95
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	2 cut(s)	51, 267
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	3 cut(s)	138, 316, 339
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	2 cut(s)	52, 268
Hin1II	CATG	2 cut(s)	50, 99
Hin6I	GCGC	2 cut(s)	50, 266
HinP1I	GCGC	2 cut(s)	50, 266
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	133, 151
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	3 cut(s)	108, 286, 302
Hpy8I	GTNNAC	2 cut(s)	133, 151
Hpy99I	CGWCG	2 cut(s)	91, 94
HpyAV	CCTTC	2 cut(s)	114, 157
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	4, 46, 172, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	50, 99
HspAI	GCGC	2 cut(s)	50, 266
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	8 cut(s)	32, 152, 158, 212, 221, 315, 315, 330
MboII	GAAGA	4 cut(s)	50, 137, 202, 254
MnlI	CCTC	7 cut(s)	96, 121, 169, 211, 247, 286, 298
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	178
NlaIII	CATG	2 cut(s)	50, 99
NlaIV	GGNNCC	2 cut(s)	31, 338
NsbI	TGCGCA	1 cut(s)	267
NspI	RCATGY	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 150
PfeI	GAWTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	31, 338
PspPI	GGNCC	1 cut(s)	337
RsaI	GTAC	3 cut(s)	152, 158, 185
RsaNI	GTAC	3 cut(s)	151, 157, 184
SaqAI	TTAA	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	4 cut(s)	107, 132, 144, 222
SphI	GCATGC	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	100, 196
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	144
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.