Rh6CG403400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000535
Physical Location & Seq
Reverse (-)
58966446 .. 58966804
359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG403400.1

Sequence Viewer

Length: 237 bp
ATGAAGAGATTATTCATTATTGGTTCCGATCAGGAAGAGATTTATGGCCAGCTCGATGTGTACGAGTACGAGGAGGCAGTGCCGGAGGAGCAGTCCAAGAAGAACCGCCTGATTAAAAAGGTCGGCAGGACGGCAACCCTGAGTACGGGCTACCTCATGACTTCCAGGATGAAAATGTGTCATCGGATGATGATGATACCAAGGACGCTGGACAGTCATGAAAGATTGAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.24

Weight (kDa)

7.88

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 46
AfaI GTAC 3 cut(s) 62, 68, 145
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AoxI GGCC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 48
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 174, 192
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 2 cut(s) 86, 101
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 145
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 132
BspHI TCATGA 2 cut(s) 156, 217
BspLI GGNNCC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 2 cut(s) 174, 192
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 174, 192
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 2 cut(s) 156, 217
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 61, 67, 144
CviAII CATG 2 cut(s) 157, 218
CviJI RGCY 3 cut(s) 48, 52, 150
CviKI_1 RGCY 3 cut(s) 48, 52, 150
CviQI GTAC 3 cut(s) 61, 67, 144
DdeI CTNAG 1 cut(s) 140
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 160, 221
FaiI YATR 3 cut(s) 45, 158, 219
FatI CATG 2 cut(s) 156, 217
FokI GGATG 2 cut(s) 181, 199
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 214
Hin1II CATG 2 cut(s) 160, 221
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 28, 186
Hpy188III TCNNGA 3 cut(s) 32, 157, 218
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 160, 221
Kzo9I GATC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 9 cut(s) 17, 62, 96, 112, 122, 151, 152, 178, 194
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 16, 47, 112
MlsI TGGCCA 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 48
MnlI CCTC 4 cut(s) 64, 67, 79, 164
Mox20I TGGCCA 1 cut(s) 48
MscI TGGCCA 1 cut(s) 48
MseI TTAA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 1 cut(s) 28
NlaIII CATG 2 cut(s) 160, 221
NlaIV GGNNCC 1 cut(s) 25
PagI TCATGA 2 cut(s) 156, 217
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 3 cut(s) 62, 68, 145
RsaNI GTAC 3 cut(s) 61, 67, 144
SaqAI TTAA 1 cut(s) 114
Sau3AI GATC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 54, 123, 156
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 54
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 4 cut(s) 4, 17, 185, 234
TspRI CASTG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.