Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Reverse (-)

19064101 .. 19064481

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTGTGTTGTTCTTGGGCGCTCTGCTGAATGCTATTCTTTGTTTTTCCTCCTCCTTATGTTCGATGTTTGCGGCTTTGATGGGGGACTATTAGATCCGGTTTTGGATCGGACTTTGGATCCTTATGTGTTCGGTGAAGGAGGTACTGCAAATAGCAGAATCAATCCTTGGAGGTGGAGAGGGTTTCTGGGCGTGGAGACTCTGATGCGTCTCGACGGATTCCGTCCGGGTTGTTTTGGCCTGGTTGGTTTTGGAGACGAGGGCAGCAATCTGGTAATGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTCTTTGGTGATGCTCGCGACTGGGGTGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.72

Weight (kDa)

4.48

Isoelectric Point (pI)

34.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	363
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	4 cut(s)	125, 149, 150, 162
AfaI	GTAC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
Alw26I	GTCTC	3 cut(s)	227, 251, 285
AlwI	GGATC	4 cut(s)	125, 149, 150, 162
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	182, 328, 338, 365
BamHI	GGATCC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	110, 317
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	3 cut(s)	227, 251, 285
BfoI	RGCGCY	1 cut(s)	58
BisI	GCNGC	2 cut(s)	109, 301
BlsI	GCNGC	2 cut(s)	110, 302
Bme1390I	CCNGG	2 cut(s)	264, 278
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	264, 278
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	231, 346
BmuI	ACTGGG	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	328
BseJI	GATNNNNATC	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	134, 263
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	227, 251, 285
BsmBI	CGTCTC	2 cut(s)	251, 285
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	130, 142, 154, 328
Bsp68I	TCGCGA	1 cut(s)	363
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	4 cut(s)	125, 149, 150, 162
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	4 cut(s)	130, 142, 154, 328
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	363
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	133, 145, 157, 331
BstMAI	GTCTC	3 cut(s)	227, 251, 285
BstMBI	GATC	4 cut(s)	130, 142, 154, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	262, 276
BstUI	CGCG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	130, 154
BstYI	RGATCY	2 cut(s)	130, 154
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	328
BtuMI	TCGCGA	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	361
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	180
CviJI	RGCY	4 cut(s)	5, 111, 276, 335
CviKI_1	RGCY	4 cut(s)	5, 111, 276, 335
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	4 cut(s)	132, 144, 156, 330
DpnII	GATC	4 cut(s)	130, 142, 154, 328
Eco130I	CCWWGG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	2 cut(s)	251, 285
FaiI	YATR	2 cut(s)	95, 162
FaqI	GGGAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	109, 301
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	109, 301
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	109, 301
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	134, 263
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	57
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	195, 235, 255
HpaII	CCGG	2 cut(s)	134, 263
HphI	GGTGA	4 cut(s)	182, 328, 338, 365
Hpy188I	TCNGA	2 cut(s)	147, 240
Hpy188III	TCNNGA	2 cut(s)	248, 362
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	33, 167, 313
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	130, 142, 154, 328
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	2 cut(s)	231, 346
MalI	GATC	4 cut(s)	132, 144, 156, 330
MboI	GATC	4 cut(s)	130, 142, 154, 328
MflI	RGATCY	2 cut(s)	130, 154
MluCI	AATT	2 cut(s)	15, 376
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	7 cut(s)	37, 95, 98, 170, 201, 209, 289
MspI	CCGG	2 cut(s)	134, 263
MspR9I	CCNGG	2 cut(s)	264, 278
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	130, 142, 154, 328
NlaIV	GGNNCC	1 cut(s)	156
NruI	TCGCGA	1 cut(s)	363
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	195, 255
PkrI	GCNGC	2 cut(s)	110, 302
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	130, 154
RruI	TCGCGA	1 cut(s)	363
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SatI	GCNGC	2 cut(s)	109, 301
Sau3AI	GATC	4 cut(s)	130, 142, 154, 328
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	264, 278
SetI	ASST	2 cut(s)	181, 212
SfaNI	GCATC	2 cut(s)	231, 346
Sse9I	AATT	2 cut(s)	15, 376
SsiI	CCGC	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	262, 276
StyI	CCWWGG	1 cut(s)	203
TaqI	TCGA	3 cut(s)	99, 249, 337
TasI	AATT	2 cut(s)	15, 376
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	195, 255
TseI	GCWGC	1 cut(s)	300
TspGWI	ACGGA	2 cut(s)	248, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.