Rh2DG240900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000535
Physical Location & Seq
Forward (+)
24447787 .. 24448383
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG240900.1

Sequence Viewer

Length: 597 bp
ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCGTGTCATGCTTTGCTTTAAGGTGCGCTGCAGGTCGTTTCTCTTTGCTTTTCCTTCTCCTTGGACTTGTTGTTAGTAGTTTTGATGGAGGACTGTTTGATCTGGGATTGGCTCTTTCCTTGATTCCTGATGGGTCGGGTGATGGAGGTTATGGGGATAACGCAATTGATCCGTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAATGGCAGCCTAACAACCTGCTTAAGCCCAGAGCATCATCGAGGGCCAGTCGCGGCTGCTGCTGCTAAAGTTGATGGCGGCAATCTAGTGTTGGTGAAGGACGGCGCTCTGATTCTGTTTGGGAGTGGTCTGTGCCGGCTTGGTCGTGGTGGCTTGTTGGTGGAATGGTACCAGTGCTTTGCGGCGGTGGCGCGGGACGGAGGTGGTGGTTATGCAGATGTCACCCGTTGGGCCGTGTTCGATCGGAGCTCTAACCCTAGCATTTGGTCTCCTGGCTTTGGGCTTTTTTTGCTCAAGTTTCTTTGGGTGTGGGCTGGCCCTATGCTTTGGGGCTGCTGGATTAGGGTGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

20.96

Weight (kDa)

8.27

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 53, 269
Acc65I GGTACC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 411
AccII CGCG 3 cut(s) 240, 296, 436
AciI CCGC 5 cut(s) 296, 321, 425, 428, 436
AclWI GGATC 1 cut(s) 194
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 29, 521
AflII CTTAAG 1 cut(s) 265
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 1 cut(s) 492
AluI AGCT 1 cut(s) 492
Alw21I GWGCWC 1 cut(s) 494
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 194
AoxI GGCC 3 cut(s) 287, 474, 559
ApeKI GCWGC 6 cut(s) 59, 249, 299, 302, 305, 576
Asp718I GGTACC 1 cut(s) 411
AspLEI GCGC 3 cut(s) 59, 350, 436
AspS9I GGNCC 3 cut(s) 287, 474, 560
AsuHPI GGTGA 3 cut(s) 182, 349, 457
BanI GGYRCC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 494
BbvI GCAGC 6 cut(s) 46, 261, 286, 289, 292, 563
BccI CCATC 4 cut(s) 110, 155, 167, 311
BceAI ACGGC 2 cut(s) 361, 461
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 2 cut(s) 329, 501
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 265
BfuAI ACCTGC 2 cut(s) 53, 269
BisI GCNGC 9 cut(s) 60, 250, 297, 300, 303, 306, 322, 426, 577
BlsI GCNGC 9 cut(s) 61, 251, 298, 301, 304, 307, 323, 427, 578
Bme1390I CCNGG 1 cut(s) 516
BmgT120I GGNCC 3 cut(s) 287, 474, 560
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 521
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 91, 203
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 521
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 290, 415
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 91, 203
BseLI CCNNNNNNNGG 2 cut(s) 29, 521
BseNI ACTGG 2 cut(s) 290, 415
BseXI GCAGC 6 cut(s) 46, 261, 286, 289, 292, 563
Bsh1236I CGCG 3 cut(s) 240, 296, 436
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 289, 476, 561
BshNI GGYRCC 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 494
BsiSI CCGG 2 cut(s) 30, 379
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 29, 521
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 3 cut(s) 289, 476, 561
Bso31I GGTCTC 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 494
Bsp143I GATC 3 cut(s) 130, 199, 484
BspACI CCGC 5 cut(s) 296, 321, 425, 428, 436
BspANI GGCC 3 cut(s) 289, 476, 561
BspFNI CGCG 3 cut(s) 240, 296, 436
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 2 cut(s) 53, 269
BspPI GGATC 1 cut(s) 194
BspT107I GGYRCC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 516
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 2 cut(s) 290, 415
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 91, 203
BssMI GATC 3 cut(s) 130, 199, 484
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 380, 559
BstDEI CTNAG 1 cut(s) 594
BstDSI CCRYGG 1 cut(s) 203
BstFNI CGCG 3 cut(s) 240, 296, 436
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 3 cut(s) 59, 350, 436
BstKTI GATC 3 cut(s) 133, 202, 487
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 3 cut(s) 130, 199, 484
BstMCI CGRYCG 1 cut(s) 487
BstMWI GCNNNNNNNGC 6 cut(s) 39, 246, 302, 305, 431, 532
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 3 cut(s) 240, 296, 436
BstV1I GCAGC 6 cut(s) 46, 261, 286, 289, 292, 563
BsuRI GGCC 3 cut(s) 289, 476, 561
BtgI CCRYGG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 422
BveI ACCTGC 2 cut(s) 53, 269
Cac8I GCNNGC 2 cut(s) 380, 559
CfoI GCGC 3 cut(s) 59, 350, 436
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 287, 474, 560
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 412
CviAII CATG 1 cut(s) 39
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 594
DpnI GATC 3 cut(s) 132, 201, 486
DpnII GATC 3 cut(s) 130, 199, 484
Ecl136II GAGCTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 1 cut(s) 42
FaiI YATR 4 cut(s) 40, 183, 456, 566
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 38
FauI CCCGC 1 cut(s) 429
Fnu4HI GCNGC 9 cut(s) 60, 250, 297, 300, 303, 306, 322, 426, 577
FriOI GRGCYC 1 cut(s) 494
Fsp4HI GCNGC 9 cut(s) 60, 250, 297, 300, 303, 306, 322, 426, 577
FspBI CTAG 2 cut(s) 329, 501
GlaI GCGC 3 cut(s) 58, 349, 435
GluI GCNGC 9 cut(s) 60, 250, 297, 300, 303, 306, 322, 426, 577
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 3 cut(s) 289, 476, 561
HapII CCGG 2 cut(s) 30, 379
HgaI GACGC 1 cut(s) 229
HhaI GCGC 3 cut(s) 59, 350, 436
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 3 cut(s) 57, 348, 434
HinP1I GCGC 3 cut(s) 57, 348, 434
HinfI GANTC 2 cut(s) 154, 355
HpaII CCGG 2 cut(s) 30, 379
HphI GGTGA 3 cut(s) 182, 349, 457
Hpy188I TCNGA 2 cut(s) 354, 489
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 34, 95, 334
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 62, 458
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 246, 302, 305, 431, 532
HpyF3I CTNAG 1 cut(s) 594
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 3 cut(s) 57, 348, 434
KpnI GGTACC 1 cut(s) 415
KroI GCCGGC 1 cut(s) 378
KroNI GCCGGC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 130, 199, 484
LmnI GCTCC 1 cut(s) 489
Lsp1109I GCAGC 6 cut(s) 46, 261, 286, 289, 292, 563
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 329, 501
MaeIII GTNAC 1 cut(s) 463
MalI GATC 3 cut(s) 132, 201, 486
MboI GATC 3 cut(s) 130, 199, 484
MfeI CAATTG 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 494
MluCI AATT 1 cut(s) 195
MnlI CCTC 7 cut(s) 113, 170, 201, 207, 238, 278, 437
MroNI GCCGGC 1 cut(s) 378
MseI TTAA 2 cut(s) 50, 266
MspCI CTTAAG 1 cut(s) 265
MspI CCGG 2 cut(s) 30, 379
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 3 cut(s) 240, 296, 436
MwoI GCNNNNNNNGC 6 cut(s) 39, 246, 302, 305, 431, 532
NaeI GCCGGC 1 cut(s) 380
NdeII GATC 3 cut(s) 130, 199, 484
NgoMIV GCCGGC 1 cut(s) 378
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 413
NmuCI GTSAC 1 cut(s) 463
PdiI GCCGGC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 154, 355
PkrI GCNGC 9 cut(s) 61, 251, 298, 301, 304, 307, 323, 427, 578
Ple19I CGATCG 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 3 cut(s) 287, 474, 560
PstI CTGCAG 1 cut(s) 64
PvuI CGATCG 1 cut(s) 487
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 1 cut(s) 494
SaqAI TTAA 2 cut(s) 50, 266
SatI GCNGC 9 cut(s) 60, 250, 297, 300, 303, 306, 322, 426, 577
Sau3AI GATC 3 cut(s) 130, 199, 484
Sau96I GGNCC 3 cut(s) 287, 474, 560
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 494
SetI ASST 7 cut(s) 56, 67, 181, 212, 263, 448, 494
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 265, 536
SmoI CTYRAG 2 cut(s) 265, 536
Sse9I AATT 1 cut(s) 195
SsiI CCGC 5 cut(s) 296, 321, 425, 428, 436
SspMI CTAG 2 cut(s) 329, 501
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 283, 483
TasI AATT 1 cut(s) 195
TauI GCSGC 3 cut(s) 299, 324, 428
TfiI GAWTC 2 cut(s) 154, 355
Tru1I TTAA 2 cut(s) 50, 266
Tru9I TTAA 2 cut(s) 50, 266
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 6 cut(s) 59, 249, 299, 302, 305, 576
Tsp45I GTSAC 1 cut(s) 463
TspGWI ACGGA 2 cut(s) 192, 456
TspRI CASTG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 265
XspI CTAG 2 cut(s) 329, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.