Rh7BG417800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000535
Physical Location & Seq
Reverse (-)
47169241 .. 47169786
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG417800.1

Sequence Viewer

Length: 546 bp
ATGGCTCTTGCCACAATCGATCCTTCCTTTGGCGTGTTCTGTGTTGTCCTGGGGCATGCTGCTGAATGCTTTTATTTGCTTTTCCTCTTCCTTATGCTTGATGTTTACGGCTTTGGTGGAGGACTATTAGATCCGGGTTTGGATCTAATTCTGGTTCCTTATGTGATGGGTGAAGGAGGTACTGCGAATAGCAGAATCGATCCTTGGAGGTGGAGAGGGTTTCTGCCCTCTAATGGTAGCGTCAGCGATGGCGCACAAACCTGGTCGTGGAGCCCAAAATCCTTTGGTCAGCGAGGACTGGTCGTGGTGAATCTGATGCGTCTCGATGGATCCCATTTGGGGTGTTTTGGTCTGGTTGATTTTGGAGATGAGGGCAGTGATCGACGGATGGTGAAGGATGGGGATCTGGCTCGATCTGCTCTCCTAGGGGACTCCGATGGCTGGGGTAGGAATCGGCCTGATCATGATGGTCTAGCAGTGACTTTGTACCGGAGCTTTGCAGCGGTGAGGCAAGTCAGAGGTGGTGGTGCCCTTAGCAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.42

Weight (kDa)

5.22

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 527
AciI CCGC 1 cut(s) 503
AclWI GGATC 7 cut(s) 14, 125, 150, 194, 324, 337, 411
AfaI GTAC 2 cut(s) 181, 488
AfiI CCNNNNNNNGG 5 cut(s) 29, 233, 267, 339, 441
AjnI CCWGG 2 cut(s) 48, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 7 cut(s) 14, 125, 150, 194, 324, 337, 411
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 59, 500
AspA2I CCTAGG 1 cut(s) 424
AspLEI GCGC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 182, 319, 403, 517
AvrII CCTAGG 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 46, 512
BccI CCATC 7 cut(s) 160, 242, 320, 382, 392, 431, 461
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 2 cut(s) 50, 262
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 2 cut(s) 425, 473
BisI GCNGC 2 cut(s) 60, 501
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 2 cut(s) 61, 502
Bme1390I CCNGG 3 cut(s) 50, 135, 262
BmiI GGNNCC 4 cut(s) 156, 272, 331, 529
BmrFI CCNGG 3 cut(s) 50, 135, 262
BmsI GCATC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 135
Bsa29I ATCGAT 2 cut(s) 18, 198
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 49, 203, 424
BsaWI WCCGGW 1 cut(s) 489
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 233, 267, 339, 441
Bse1I ACTGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 2 cut(s) 50, 262
BseCI ATCGAT 2 cut(s) 18, 198
BseDI CCNNGG 3 cut(s) 49, 203, 424
BseGI GGATG 2 cut(s) 393, 403
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 5 cut(s) 29, 233, 267, 339, 441
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 2 cut(s) 46, 512
BseYI CCCAGC 1 cut(s) 441
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 527
BshVI ATCGAT 2 cut(s) 18, 198
BsiSI CCGG 2 cut(s) 134, 490
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 5 cut(s) 29, 233, 267, 339, 441
BsmAI GTCTC 1 cut(s) 326
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 457
Bsp1286I GDGCHC 2 cut(s) 275, 532
Bsp143I GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 457
BspDI ATCGAT 2 cut(s) 18, 198
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 4 cut(s) 156, 272, 331, 529
BspPI GGATC 7 cut(s) 14, 125, 150, 194, 324, 337, 411
BspT107I GGYRCC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 3 cut(s) 49, 203, 424
BssMI GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
BssT1I CCWWGG 2 cut(s) 203, 424
Bst2UI CCWGG 2 cut(s) 50, 262
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 533, 543
BstF5I GGATG 2 cut(s) 393, 403
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 9 cut(s) 22, 133, 145, 202, 332, 382, 406, 416, 463
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 2 cut(s) 50, 262
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 3 cut(s) 48, 133, 260
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 46, 512
BstX2I RGATCY 4 cut(s) 130, 142, 329, 403
BstYI RGATCY 4 cut(s) 130, 142, 329, 403
Bsu15I ATCGAT 2 cut(s) 18, 198
BsuRI GGCC 1 cut(s) 457
BsuTUI ATCGAT 2 cut(s) 18, 198
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 393, 403
BtsI GCAGTG 2 cut(s) 382, 483
BtsIMutI CAGTG 2 cut(s) 382, 483
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 254
ClaI ATCGAT 2 cut(s) 18, 198
CseI GACGC 2 cut(s) 229, 308
CsiI ACCWGGT 1 cut(s) 260
Csp6I GTAC 2 cut(s) 180, 487
CviAII CATG 2 cut(s) 56, 464
CviJI RGCY 7 cut(s) 5, 111, 273, 410, 441, 457, 495
CviKI_1 RGCY 7 cut(s) 5, 111, 273, 410, 441, 457, 495
CviQI GTAC 2 cut(s) 180, 487
DdeI CTNAG 2 cut(s) 533, 543
DpnI GATC 9 cut(s) 21, 132, 144, 201, 331, 381, 405, 415, 462
DpnII GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 203, 424
Eco24I GRGCYC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 48, 260
EcoT14I CCWWGG 2 cut(s) 203, 424
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 2 cut(s) 203, 424
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 2 cut(s) 59, 467
FaiI YATR 4 cut(s) 57, 95, 162, 465
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 55, 463
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 60, 501
FokI GGATG 2 cut(s) 400, 410
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 60, 501
FspBI CTAG 2 cut(s) 425, 473
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 60, 501
GsaI CCCAGC 1 cut(s) 445
HaeIII GGCC 1 cut(s) 457
HapII CCGG 2 cut(s) 134, 490
HgaI GACGC 2 cut(s) 229, 308
HhaI GCGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 59, 467
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 4 cut(s) 195, 310, 431, 451
HpaII CCGG 2 cut(s) 134, 490
HphI GGTGA 4 cut(s) 182, 319, 403, 517
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 315, 436, 518
Hpy188III TCNNGA 2 cut(s) 323, 464
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 33, 167, 388
HpyCH4V TGCA 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 533, 543
Hsp92II CATG 2 cut(s) 59, 467
HspAI GCGC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
LmnI GCTCC 2 cut(s) 270, 492
Lsp1109I GCAGC 2 cut(s) 46, 512
LweI GCATC 1 cut(s) 306
MabI ACCWGGT 1 cut(s) 260
MaeI CTAG 2 cut(s) 425, 473
MaeIII GTNAC 1 cut(s) 478
MalI GATC 9 cut(s) 21, 132, 144, 201, 331, 381, 405, 415, 462
MboI GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
MboII GAAGA 1 cut(s) 79
MflI RGATCY 4 cut(s) 130, 142, 329, 403
MhlI GDGCHC 2 cut(s) 275, 532
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 2 cut(s) 134, 490
MspR9I CCNGG 3 cut(s) 50, 135, 262
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 50, 262
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 1 cut(s) 135
NdeII GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
NlaIII CATG 2 cut(s) 59, 467
NlaIV GGNNCC 4 cut(s) 156, 272, 331, 529
NmuCI GTSAC 1 cut(s) 478
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PagI TCATGA 1 cut(s) 463
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 195, 310, 451
PkrI GCNGC 2 cut(s) 61, 502
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 48, 260
PspFI CCCAGC 1 cut(s) 441
PspGI CCWGG 2 cut(s) 48, 260
PspN4I GGNNCC 4 cut(s) 156, 272, 331, 529
PsuI RGATCY 4 cut(s) 130, 142, 329, 403
RsaI GTAC 2 cut(s) 181, 488
RsaNI GTAC 2 cut(s) 180, 487
SatI GCNGC 2 cut(s) 60, 501
Sau3AI GATC 9 cut(s) 19, 130, 142, 199, 329, 379, 403, 413, 460
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 3 cut(s) 50, 135, 262
SduI GDGCHC 2 cut(s) 275, 532
SetI ASST 5 cut(s) 181, 212, 263, 497, 523
SexAI ACCWGGT 1 cut(s) 260
SfaNI GCATC 1 cut(s) 306
SphI GCATGC 1 cut(s) 59
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 503
SspMI CTAG 2 cut(s) 425, 473
StyD4I CCNGG 3 cut(s) 48, 133, 260
StyI CCWWGG 2 cut(s) 203, 424
TaqI TCGA 5 cut(s) 18, 198, 324, 382, 412
TasI AATT 1 cut(s) 147
TfiI GAWTC 3 cut(s) 195, 310, 451
TscAI CASTG 2 cut(s) 382, 483
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 59, 500
Tsp45I GTSAC 1 cut(s) 478
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 2 cut(s) 382, 483
XceI RCATGY 1 cut(s) 59
XmaJI CCTAGG 1 cut(s) 424
XspI CTAG 2 cut(s) 425, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.