Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

56553279 .. 56563567

Gene Structure 10289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG369800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGTGCAGGGGTAATTCTTTACATCCTTCTTAGTGGAATACCACCATTTTGGGGGAAGATAAAGTCAAGCATATTTGATGCTGTTAGGACAGCTGATCTGAGGTTCCCATCTGATCCTTGGGATGGCATCACTGAATTAGCTAATGATTTGATTCGAGGAATGCTTTGTAAAGATCCTTCTAAAAGGCTCACCGCTCACCAGGTTTTAGGTGGTTCAAGTAATGATTTCAGTAACAGAGTATGCTCAAATGCTGATCTCAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04012 ko04020 ko04024 ko04066 ko04114 ko04217 ko04261 ko04310 ko04360 ko04713 ko04720 ko04722 ko04725 ko04728 ko04740 ko04745 ko04750 ko04911 ko04912 ko04916 ko04921 ko04922 ko04925 ko04934 ko04971 ko05031 ko05152 ko05200 ko05205 ko05214 map04012 map04020 map04024 map04066 map04114 map04217 map04261 map04310 map04360 map04713 map04720 map04722 map04725 map04728 map04740 map04745 map04750 map04911 map04912 map04916 map04921 map04922 map04925 map04934 map04971 map05031 map05152 map05200 map05205 map05214

Pfam Domains

Protein Families

Pkinase

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

7.73

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 70	1.8e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	110, 170
AfiI	CCNNNNNNNGG	2 cut(s)	53, 125
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	95, 143
AluI	AGCT	2 cut(s)	95, 143
AlwI	GGATC	2 cut(s)	110, 170
AsuHPI	GGTGA	2 cut(s)	184, 191
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
BccI	CCATC	2 cut(s)	118, 119
BciT130I	CCWGG	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	3 cut(s)	70, 138, 254
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 125
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	2 cut(s)	24, 130
BseLI	CCNNNNNNNGG	2 cut(s)	53, 125
BseMII	CTCAG	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	53, 125
BsmI	GAATGC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	97, 115, 175, 256
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	110, 170
BsrBI	CCGCTC	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	4 cut(s)	97, 115, 175, 256
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	32, 101, 260
BstF5I	GGATG	2 cut(s)	24, 130
BstKTI	GATC	4 cut(s)	100, 118, 178, 259
BstMBI	GATC	4 cut(s)	97, 115, 175, 256
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	24, 130
BtsIMutI	CAGTG	1 cut(s)	132
CsiI	ACCWGGT	1 cut(s)	201
CviJI	RGCY	3 cut(s)	95, 143, 190
CviKI_1	RGCY	3 cut(s)	95, 143, 190
DdeI	CTNAG	3 cut(s)	32, 101, 260
DpnI	GATC	4 cut(s)	99, 117, 177, 258
DpnII	GATC	4 cut(s)	97, 115, 175, 256
Eco130I	CCWWGG	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaiI	YATR	2 cut(s)	74, 244
FokI	GGATG	2 cut(s)	11, 137
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	2 cut(s)	184, 191
Hpy188I	TCNGA	3 cut(s)	102, 115, 263
HpyAV	CCTTC	2 cut(s)	38, 189
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	3 cut(s)	32, 101, 260
Kzo9I	GATC	4 cut(s)	97, 115, 175, 256
LpnPI	CCDG	2 cut(s)	188, 215
LweI	GCATC	3 cut(s)	70, 138, 254
MabI	ACCWGGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	99, 117, 177, 258
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	4 cut(s)	97, 115, 175, 256
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	2 cut(s)	15, 137
MnlI	CCTC	2 cut(s)	96, 152
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	97, 115, 175, 256
NlaIV	GGNNCC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	95
Sau3AI	GATC	4 cut(s)	97, 115, 175, 256
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	5 cut(s)	97, 107, 145, 207, 214
SexAI	ACCWGGT	1 cut(s)	201
SfaNI	GCATC	3 cut(s)	70, 138, 254
SgeI	CNNG	7 cut(s)	21, 81, 132, 170, 214, 215, 231
Sse9I	AATT	2 cut(s)	15, 137
SsiI	CCGC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	119
TaqI	TCGA	1 cut(s)	157
TasI	AATT	2 cut(s)	15, 137
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	1 cut(s)	139
TspRI	CASTG	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	117, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.