Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000535

Physical Location & Seq

Genomic Coordinates Forward (+)

3292138 .. 3292741

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG042500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTATTGCCACAAACTCCCCCTTCTCCGGCGTGTCATGCTTTGCTTTAGGGTGTGCTGCAGGTCGTTTCTCTTTGCTTTTCCTTCTCCTTGGACTCTCTATTAGCGGTTTTGATGGAGGACTTTTTGATTTGGGATTGGCTCTTTCTTTGATTCCTGATGGGTCGGGTGATGGAGGTTCTGGGGATAACGCAATTGCTCCTTGGAGGTGGAGGGGTTTTCTACCCTCTGGTATTCGCGTCAATGGCAGCCTAATAACCTGCTTGAGCCTAGAGCATCATCGAGGGCCAGTCGCGGCTGCTGCTGTTGGAGTTGATGGCGGCAATCTGGTGTTGGTGAAGGACGGCGCTCTGGCTTCGTCTGGGAGTGGTCTGTGTCAGCTTGGTCGTGGTGGCTTGTTGGTGGACTGGTACCAGTGCTTTACGGCGGCGGCGCGGGATGGAGGTGGTGGTTATGCAGGTTTCTTTGGGTGTGGGTTGGCCCTATGCTTTGGGGCTGCTGGATTAGGGTGTCTTGGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

17.17

Weight (kDa)

5.43

Isoelectric Point (pI)

24.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000535)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111761 RchiOBHm_Chr3g0459241
rosa_laevigata	RLG00000001616 RLG00000006868 RLG00000006997 RLG00000010796 RLG00000012967 RLG00000014804 RLG00000014825 RLG00000015395 RLG00000015398 RLG00000019628 RLG00000024491 RLG00000027590 RLG00000027764 RLG00000028601 RLG00000029949 RLG00000031263 RLG00000032830 RLG00000033170 RLG00000035496
rosa_multiflora	Rmu_sc0001294.1_g000021 Rmu_sc0001827.1_g000005 Rmu_sc0004359.1_g000029 Rmu_sc0006276.1_g000001 Rmu_sc0015178.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153650
rosa_rugosa	Rorug02G0292900 Rorug05G0301000
rosa_samantha	Rh1AG327000 Rh1DG086600 Rh2AG221500 Rh2AG233300 Rh2AG344700 Rh2BG353100 Rh2CG126500 Rh2CG232500 Rh2DG227700 Rh2DG240900 Rh3AG178400 Rh3CG157700 Rh3CG194700 Rh4DG139000 Rh4DG291700 Rh5AG042500 Rh5AG110400 Rh5AG140800 Rh5AG194100 Rh5AG396300 Rh5AG428200 Rh5BG175900 Rh5BG192200 Rh5BG478300 Rh5BG506200 Rh5CG046700 Rh5CG192900 Rh5CG460400 Rh5CG502400 Rh5CG529900 Rh5CG562300 Rh5DG105800 Rh5DG176300 Rh5DG424700 Rh6AG020600 Rh6AG234200 Rh6BG016400 Rh6BG327900 Rh6BG397700 Rh6CG396600 Rh6CG403400 Rh6DG369800 Rh6DG390000 Rh7AG105200 Rh7BG417800 Rh7CG110000 Rh7DG108200 Rh7DG251400 Rh7DG257100 Rh7DG359100
rosa_wichuraiana	Rw0G006280 Rw0G016220 Rw2G017250 Rw2G027510 Rw6G001690 Rw7G009110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	53, 269, 449
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	3 cut(s)	240, 296, 436
AciI	CCGC	6 cut(s)	108, 296, 321, 428, 431, 436
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
AoxI	GGCC	3 cut(s)	287, 480, 518
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	5 cut(s)	59, 249, 299, 302, 497
Asp718I	GGTACC	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	350, 436
AspS9I	GGNCC	4 cut(s)	287, 481, 518, 519
AsuHPI	GGTGA	2 cut(s)	182, 349
BaeGI	GKGCMC	1 cut(s)	522
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	46, 261, 286, 289, 484
BccI	CCATC	5 cut(s)	110, 155, 167, 311, 434
BceAI	ACGGC	2 cut(s)	361, 441
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	3 cut(s)	53, 269, 449
BisI	GCNGC	9 cut(s)	60, 250, 297, 300, 303, 322, 429, 432, 498
BlsI	GCNGC	9 cut(s)	61, 251, 298, 301, 304, 323, 430, 433, 499
BmgT120I	GGNCC	4 cut(s)	287, 481, 518, 519
BmiI	GGNNCC	2 cut(s)	413, 520
BmsI	GCATC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	91, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	3 cut(s)	290, 413, 415
BseDI	CCNNGG	2 cut(s)	91, 203
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	290, 413, 415
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	5 cut(s)	46, 261, 286, 289, 484
Bsh1236I	CGCG	3 cut(s)	240, 296, 436
BshFI	GGCC	3 cut(s)	289, 482, 520
BshNI	GGYRCC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	29
BsnI	GGCC	3 cut(s)	289, 482, 520
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	522
BspACI	CCGC	6 cut(s)	108, 296, 321, 428, 431, 436
BspANI	GGCC	3 cut(s)	289, 482, 520
BspFNI	CGCG	3 cut(s)	240, 296, 436
BspLI	GGNNCC	2 cut(s)	413, 520
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	3 cut(s)	53, 269, 449
BspT107I	GGYRCC	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	290, 413, 415
BssECI	CCNNGG	2 cut(s)	91, 203
BssT1I	CCWWGG	2 cut(s)	91, 203
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	3 cut(s)	240, 296, 436
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	350, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 246, 302
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	3 cut(s)	240, 296, 436
BstV1I	GCAGC	5 cut(s)	46, 261, 286, 289, 484
BsuRI	GGCC	3 cut(s)	289, 482, 520
BtsCI	GGATG	1 cut(s)	445
BtsIMutI	CAGTG	1 cut(s)	422
BveI	ACCTGC	3 cut(s)	53, 269, 449
CfoI	GCGC	2 cut(s)	350, 436
Cfr13I	GGNCC	4 cut(s)	287, 481, 518, 519
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	91, 203
Eco24I	GRGCYC	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	91, 203
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	91, 203
FaeI	CATG	1 cut(s)	42
FaiI	YATR	3 cut(s)	40, 456, 487
FatI	CATG	1 cut(s)	38
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	9 cut(s)	60, 250, 297, 300, 303, 322, 429, 432, 498
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	9 cut(s)	60, 250, 297, 300, 303, 322, 429, 432, 498
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	2 cut(s)	349, 435
GluI	GCNGC	9 cut(s)	60, 250, 297, 300, 303, 322, 429, 432, 498
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	289, 482, 520
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	350, 436
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	348, 434
HinP1I	GCGC	2 cut(s)	348, 434
HinfI	GANTC	2 cut(s)	96, 154
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	182, 349
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	34, 95, 334
HpyCH4V	TGCA	2 cut(s)	62, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 246, 302
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	2 cut(s)	348, 434
KpnI	GGTACC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	5 cut(s)	46, 261, 286, 289, 484
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	113, 170, 201, 207, 238, 278, 437
MspI	CCGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	195
MvnI	CGCG	3 cut(s)	240, 296, 436
MwoI	GCNNNNNNNGC	3 cut(s)	39, 246, 302
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	2 cut(s)	413, 520
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	9 cut(s)	61, 251, 298, 301, 304, 323, 430, 433, 499
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	413, 520
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	4 cut(s)	287, 481, 518, 519
PstI	CTGCAG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SatI	GCNGC	9 cut(s)	60, 250, 297, 300, 303, 322, 429, 432, 498
Sau96I	GGNCC	4 cut(s)	287, 481, 518, 519
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	522
SetI	ASST	7 cut(s)	67, 181, 212, 263, 384, 448, 463
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	6 cut(s)	108, 296, 321, 428, 431, 436
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	91, 203
TaqI	TCGA	1 cut(s)	283
TasI	AATT	1 cut(s)	195
TauI	GCSGC	4 cut(s)	299, 324, 431, 434
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	1 cut(s)	422
TseI	GCWGC	5 cut(s)	59, 249, 299, 302, 497
TspRI	CASTG	1 cut(s)	422
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.