RLG00000033170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000535
Physical Location & Seq
Reverse (-)
24038262 .. 24039815
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033170

Sequence Viewer

Length: 870 bp
ATGGCTCTTGCCACAATTTTTCCTTCCTCCAGCGTGTCCTGTGTTGTTCTTGGGCGCGCTGCTGAATGCTATTCTTTGTTTTTCCTCCTCCTTATGCTTGGGGTTTGCAGCTTTGATGGGGGACTATTAGATCCGATTTTGGATCGGACTTTGGATCAAGGAGGCACTGCAAATAGCAGAATCAATCCTTGGAGGTGGAGAGGGTTTCTGGGTGCGGAGACTTTGTTGCGTCTCGACGGATTCCGTCCGGGGCATTTTGGCCTGGTTGGTTTTGGAGATGAGGGCAGCAATTTGGTAATGGTGAAGGATGGTGATCTGGCTCGATTTGCTTTCTTTGGCGATGCTCGCGGCTGGGTTGGGAATCAGCCTGGTCGTGGTAGTCTAGCAATGGCTGCGTGTAGAAGCTTTACGGTGGCTTGGCAAGTCGGAGGGGGTGGTGGTCTGGATGCTAGGGTGTCCTCATCAATTGGCACCATCTGGGCCTCGTTGGGCCAGAACTATAACCCCAACATTTGGCTCGATGTGGAGTTGGCTGCCCTTATGTTGTTGGCTGCCCTTGTGTTGCGGGGCTGCTGGAGTAGATATTTCGGGCCCGCTGTGGTGAATCTTCTTGTGAACTTGTTGCTGCTGAAGCATCCAAAAAGACTGAGATTGCAGGCTTGGAGGCCTCGAAGCATGAAGAAGGAATGGAAGTATGTGGGCCCCACATTAGCCCACATGGCAGTAGCAAAAAACAACCTAGAAAGAGCCCAATTAGAACCTCCAATATTTGCAACCTCAGTCAGCCCACTAGAGCCTAGGACCAGATCTGTCCAAGACAACCTAGAGTACCAAACCGAGTTGGGCCTCCATCTTGCTTTGGGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.53

Weight (kDa)

9.24

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 513
AccII CGCG 2 cut(s) 57, 348
AciI CCGC 4 cut(s) 215, 348, 565, 594
AclWI GGATC 3 cut(s) 125, 150, 162
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 1 cut(s) 830
AfiI CCNNNNNNNGG 2 cut(s) 374, 513
AjnI CCWGG 2 cut(s) 261, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 2 cut(s) 111, 405
AluI AGCT 2 cut(s) 111, 405
Alw26I GTCTC 2 cut(s) 212, 236
AlwI GGATC 3 cut(s) 125, 150, 162
AoxI GGCC 8 cut(s) 259, 480, 490, 590, 665, 700, 844, 862
ApaI GGGCCC 3 cut(s) 594, 704, 866
ApeKI GCWGC 8 cut(s) 59, 108, 285, 392, 533, 551, 570, 625
AspA2I CCTAGG 1 cut(s) 797
AspLEI GCGC 2 cut(s) 57, 59
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 3 cut(s) 313, 323, 613
AvaII GGWCC 1 cut(s) 801
AvrII CCTAGG 1 cut(s) 797
BaeGI GKGCMC 3 cut(s) 594, 704, 866
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 4 cut(s) 594, 704, 751, 866
BbvI GCAGC 8 cut(s) 46, 120, 297, 379, 520, 538, 557, 612
BccI CCATC 4 cut(s) 110, 302, 482, 858
BciT130I CCWGG 2 cut(s) 263, 369
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 212, 236
BfaI CTAG 6 cut(s) 383, 450, 740, 791, 798, 824
BglI GCCNNNNNGGC 1 cut(s) 719
BglII AGATCT 1 cut(s) 806
BisI GCNGC 9 cut(s) 60, 109, 286, 349, 393, 534, 552, 571, 626
BlnI CCTAGG 1 cut(s) 797
BlsI GCNGC 9 cut(s) 61, 110, 287, 350, 394, 535, 553, 572, 627
Bme1390I CCNGG 3 cut(s) 249, 263, 369
Bme18I GGWCC 1 cut(s) 801
BmiI GGNNCC 6 cut(s) 472, 592, 702, 703, 864, 865
BmrFI CCNGG 3 cut(s) 249, 263, 369
BmsI GCATC 3 cut(s) 331, 436, 643
BpmI CTGGAG 2 cut(s) 13, 595
BpuMI CCSGG 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 188, 248, 797
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 513
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 2 cut(s) 263, 369
BseDI CCNNGG 3 cut(s) 188, 248, 797
BseGI GGATG 3 cut(s) 313, 451, 634
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 374, 513
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 638, 792
BsePI GCGCGC 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 77
BseSI GKGCMC 3 cut(s) 594, 704, 866
BseXI GCAGC 8 cut(s) 46, 120, 297, 379, 520, 538, 557, 612
BseYI CCCAGC 1 cut(s) 351
Bsh1236I CGCG 2 cut(s) 57, 348
BshFI GGCC 8 cut(s) 261, 482, 492, 592, 667, 702, 846, 864
BshNI GGYRCC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 374, 513
BsmAI GTCTC 2 cut(s) 212, 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 8 cut(s) 261, 482, 492, 592, 667, 702, 846, 864
Bsp120I GGGCCC 3 cut(s) 590, 700, 862
Bsp1286I GDGCHC 4 cut(s) 594, 704, 751, 866
Bsp143I GATC 5 cut(s) 130, 142, 154, 313, 806
BspACI CCGC 4 cut(s) 215, 348, 565, 594
BspANI GGCC 8 cut(s) 261, 482, 492, 592, 667, 702, 846, 864
BspCNI CTCAG 2 cut(s) 639, 791
BspFNI CGCG 2 cut(s) 57, 348
BspLI GGNNCC 6 cut(s) 472, 592, 702, 703, 864, 865
BspPI GGATC 3 cut(s) 125, 150, 162
BspT107I GGYRCC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 393
BssECI CCNNGG 3 cut(s) 188, 248, 797
BssHII GCGCGC 1 cut(s) 55
BssMI GATC 5 cut(s) 130, 142, 154, 313, 806
BssT1I CCWWGG 2 cut(s) 188, 797
Bst2UI CCWGG 2 cut(s) 263, 369
Bst4CI ACNGT 1 cut(s) 412
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 57, 346, 594, 657
BstDEI CTNAG 2 cut(s) 647, 778
BstF5I GGATG 3 cut(s) 313, 451, 634
BstFNI CGCG 2 cut(s) 57, 348
BstHHI GCGC 2 cut(s) 57, 59
BstKTI GATC 5 cut(s) 133, 145, 157, 316, 809
BstMAI GTCTC 2 cut(s) 212, 236
BstMBI GATC 5 cut(s) 130, 142, 154, 313, 806
BstMWI GCNNNNNNNGC 5 cut(s) 326, 345, 392, 631, 719
BstNI CCWGG 2 cut(s) 263, 369
BstSCI CCNGG 3 cut(s) 247, 261, 367
BstSLI GKGCMC 3 cut(s) 594, 704, 866
BstUI CGCG 2 cut(s) 57, 348
BstV1I GCAGC 8 cut(s) 46, 120, 297, 379, 520, 538, 557, 612
BstX2I RGATCY 2 cut(s) 130, 806
BstYI RGATCY 2 cut(s) 130, 806
BsuRI GGCC 8 cut(s) 261, 482, 492, 592, 667, 702, 846, 864
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 3 cut(s) 313, 451, 634
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 4 cut(s) 57, 346, 594, 657
CfoI GCGC 2 cut(s) 57, 59
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 829
CviAII CATG 2 cut(s) 676, 718
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 2 cut(s) 647, 778
DpnI GATC 5 cut(s) 132, 144, 156, 315, 808
DpnII GATC 5 cut(s) 130, 142, 154, 313, 806
Eco130I CCWWGG 2 cut(s) 188, 797
Eco147I AGGCCT 1 cut(s) 667
Eco24I GRGCYC 4 cut(s) 594, 704, 751, 866
Eco47I GGWCC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 650
EcoO109I RGGNCCY 2 cut(s) 701, 863
EcoRII CCWGG 2 cut(s) 261, 367
EcoT14I CCWWGG 2 cut(s) 188, 797
EcoT38I GRGCYC 4 cut(s) 594, 704, 751, 866
ErhI CCWWGG 2 cut(s) 188, 797
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 679, 721
FaiI YATR 6 cut(s) 95, 501, 542, 677, 696, 719
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 675, 717
FauI CCCGC 2 cut(s) 558, 601
Fnu4HI GCNGC 9 cut(s) 60, 109, 286, 349, 393, 534, 552, 571, 626
FokI GGATG 3 cut(s) 320, 458, 621
FriOI GRGCYC 4 cut(s) 594, 704, 751, 866
Fsp4HI GCNGC 9 cut(s) 60, 109, 286, 349, 393, 534, 552, 571, 626
FspBI CTAG 6 cut(s) 383, 450, 740, 791, 798, 824
GlaI GCGC 2 cut(s) 56, 58
GluI GCNGC 9 cut(s) 60, 109, 286, 349, 393, 534, 552, 571, 626
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 2 cut(s) 13, 595
HaeIII GGCC 8 cut(s) 261, 482, 492, 592, 667, 702, 846, 864
HapII CCGG 1 cut(s) 248
HgaI GACGC 1 cut(s) 218
HhaI GCGC 2 cut(s) 57, 59
Hin1II CATG 2 cut(s) 679, 721
Hin6I GCGC 2 cut(s) 55, 57
HinP1I GCGC 2 cut(s) 55, 57
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 4 cut(s) 180, 240, 361, 604
HpaII CCGG 1 cut(s) 248
HphI GGTGA 3 cut(s) 313, 323, 613
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 3 cut(s) 135, 147, 428
Hpy188III TCNNGA 2 cut(s) 233, 443
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 33, 298, 676
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 4 cut(s) 108, 170, 655, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 326, 345, 392, 631, 719
HpyF3I CTNAG 2 cut(s) 647, 778
Hsp92II CATG 2 cut(s) 679, 721
HspAI GCGC 2 cut(s) 55, 57
Kzo9I GATC 5 cut(s) 130, 142, 154, 313, 806
Lsp1109I GCAGC 8 cut(s) 46, 120, 297, 379, 520, 538, 557, 612
LweI GCATC 3 cut(s) 331, 436, 643
MaeI CTAG 6 cut(s) 383, 450, 740, 791, 798, 824
MalI GATC 5 cut(s) 132, 144, 156, 315, 808
MboI GATC 5 cut(s) 130, 142, 154, 313, 806
MboII GAAGA 2 cut(s) 599, 691
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 2 cut(s) 130, 806
MhlI GDGCHC 4 cut(s) 594, 704, 751, 866
MluCI AATT 4 cut(s) 15, 289, 465, 752
MmeI TCCRAC 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 3 cut(s) 249, 263, 369
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 263, 369
MvnI CGCG 2 cut(s) 57, 348
MwoI GCNNNNNNNGC 5 cut(s) 326, 345, 392, 631, 719
NciI CCSGG 1 cut(s) 249
NdeII GATC 5 cut(s) 130, 142, 154, 313, 806
NlaIII CATG 2 cut(s) 679, 721
NlaIV GGNNCC 6 cut(s) 472, 592, 702, 703, 864, 865
PauI GCGCGC 1 cut(s) 55
PceI AGGCCT 1 cut(s) 667
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 4 cut(s) 180, 240, 361, 604
PflMI CCANNNNNTGG 1 cut(s) 513
PkrI GCNGC 9 cut(s) 61, 110, 287, 350, 394, 535, 553, 572, 627
Psp6I CCWGG 2 cut(s) 261, 367
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 2 cut(s) 261, 367
PspN4I GGNNCC 6 cut(s) 472, 592, 702, 703, 864, 865
PspOMI GGGCCC 3 cut(s) 590, 700, 862
PsuI RGATCY 2 cut(s) 130, 806
PteI GCGCGC 1 cut(s) 55
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
SatI GCNGC 9 cut(s) 60, 109, 286, 349, 393, 534, 552, 571, 626
Sau3AI GATC 5 cut(s) 130, 142, 154, 313, 806
ScrFI CCNGG 3 cut(s) 249, 263, 369
SduI GDGCHC 4 cut(s) 594, 704, 751, 866
SetI ASST 7 cut(s) 113, 197, 407, 741, 763, 779, 825
SfaNI GCATC 3 cut(s) 331, 436, 643
SinI GGWCC 1 cut(s) 801
Sse9I AATT 4 cut(s) 15, 289, 465, 752
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 4 cut(s) 215, 348, 565, 594
SspI AATATT 1 cut(s) 768
SspMI CTAG 6 cut(s) 383, 450, 740, 791, 798, 824
StuI AGGCCT 1 cut(s) 667
StyD4I CCNGG 3 cut(s) 247, 261, 367
StyI CCWWGG 2 cut(s) 188, 797
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 4 cut(s) 234, 322, 519, 670
TasI AATT 4 cut(s) 15, 289, 465, 752
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 4 cut(s) 180, 240, 361, 604
TscAI CASTG 1 cut(s) 172
TseI GCWGC 8 cut(s) 59, 108, 285, 392, 533, 551, 570, 625
TspDTI ATGAA 1 cut(s) 692
TspGWI ACGGA 2 cut(s) 233, 252
TspRI CASTG 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 801
XmaJI CCTAGG 1 cut(s) 797
XspI CTAG 6 cut(s) 383, 450, 740, 791, 798, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.